Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47015 * 2 1 4 4 C 1.53003 * 109.46992 * 120.00095 * 2 1 3 5 5 S 1.81399 * 109.47016 * 294.99716 * 4 2 1 6 6 O 1.42105 * 110.54045 * 68.37885 * 5 4 2 7 7 O 1.42096 * 110.54599 * 291.62613 * 5 4 2 8 8 N 1.65604 * 104.44652 * 179.97438 * 5 4 2 9 9 C 1.46498 * 119.99781 * 65.00527 * 8 5 4 10 10 C 1.50699 * 109.47005 * 164.99917 * 9 8 5 11 11 C 1.38328 * 119.96230 * 269.97666 * 10 9 8 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96947 * 89.99513 * 10 9 8 25 25 C 1.53000 * 109.47011 * 239.99721 * 2 1 3 26 26 C 1.53010 * 117.49676 * 128.62156 * 25 2 1 27 27 C 1.53001 * 117.49511 * 60.00300 * 25 2 1 28 28 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47069 * 300.00051 * 1 2 3 30 30 H 1.09000 * 109.46925 * 60.00284 * 1 2 3 31 31 H 1.08996 * 109.46936 * 174.99521 * 4 2 1 32 32 H 1.09002 * 109.47346 * 55.00022 * 4 2 1 33 33 H 0.97004 * 120.00112 * 244.99820 * 8 5 4 34 34 H 1.08993 * 109.47130 * 44.99707 * 9 8 5 35 35 H 1.09003 * 109.47080 * 284.99570 * 9 8 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 39 39 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.03594 * 0.02562 * 24 10 9 41 41 H 1.08995 * 115.55334 * 274.33345 * 25 2 1 42 42 H 1.08999 * 117.49628 * 0.02562 * 26 25 2 43 43 H 1.08994 * 117.49676 * 145.01965 * 26 25 2 44 44 H 1.09004 * 117.49797 * 214.97411 * 27 25 2 45 45 H 1.08995 * 117.50053 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5602 0.2156 2.7266 6 8 0.1520 0.1682 2.9115 7 8 2.2660 1.4474 2.7870 8 7 2.1672 -0.6661 3.9902 9 6 3.6156 -0.8213 4.1460 10 6 3.9200 -1.3305 5.5313 11 6 4.1382 -0.4360 6.5637 12 6 4.4184 -0.8993 7.8361 13 6 4.4745 -2.2574 8.0814 14 6 4.2616 -3.1578 7.0459 15 8 4.3222 -4.4931 7.2826 16 6 4.7115 -4.8795 8.5143 17 1 4.8796 -4.1408 9.2840 18 6 4.8959 -6.2253 8.7927 19 7 5.2763 -6.6022 9.9944 20 14 4.6058 -7.5028 7.4612 21 1 5.8694 -7.7385 6.7175 22 1 4.1537 -8.7729 8.0839 23 1 3.5637 -7.0129 6.5236 24 6 3.9813 -2.6893 5.7687 25 6 2.0400 -0.7213 -1.2492 26 6 3.0742 0.0051 -2.1117 27 6 1.6357 -0.1495 -2.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7996 1.2056 32 1 1.6054 -1.7199 1.2952 33 1 1.5637 -1.0796 4.6272 34 1 4.1023 0.1426 3.9981 35 1 3.9862 -1.5326 3.4079 36 1 4.0896 0.6264 6.3755 37 1 4.5887 -0.1984 8.6400 38 1 4.6882 -2.6186 9.0765 39 1 5.4050 -7.5436 10.1893 40 1 3.8115 -3.3872 4.9622 41 1 2.1267 -1.8045 -1.1642 42 1 3.3915 0.9967 -1.7889 43 1 3.8416 -0.6001 -2.5941 44 1 1.4569 -0.8566 -3.4197 45 1 1.0061 0.7402 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434550495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -58.332695 kcal Electronic energy + Delta-G solvation = -26538.587254 eV Core-core repulsion = 22649.608093 eV Total energy + Delta-G solvation = -3888.979161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.36538 -38.68507 -37.37788 -37.11324 -36.11318 -34.90792 -33.95084 -32.45680 -30.57854 -29.35184 -27.98273 -25.76562 -24.99495 -23.97959 -22.67907 -21.86797 -20.82673 -20.44296 -19.49637 -18.06817 -17.74242 -17.34356 -16.70358 -16.26034 -16.02852 -15.36221 -15.24452 -15.02002 -14.61654 -14.46156 -14.21394 -13.92732 -13.71610 -13.60695 -13.20233 -13.02948 -12.82166 -12.40717 -12.34649 -12.26914 -12.15095 -12.09645 -12.02850 -12.01123 -11.71910 -11.54259 -11.39768 -10.98381 -10.93352 -10.84982 -10.79850 -10.49226 -10.39167 -10.23775 -9.58890 -9.45873 -8.94821 -8.35563 -7.49329 -6.47971 -4.15377 0.06227 1.80644 2.14417 2.69047 3.16820 3.20408 3.32302 3.34050 3.57247 3.94155 4.07158 4.17270 4.22110 4.37158 4.40983 4.56833 4.61124 4.68928 4.83349 4.87918 4.99383 5.02914 5.11960 5.19138 5.22071 5.25627 5.43166 5.46721 5.49158 5.56779 5.61113 5.71263 5.73150 5.81813 5.82798 5.91410 6.00485 6.13119 6.40075 6.65796 6.87649 6.99711 7.10016 7.19809 7.48482 7.71770 7.95920 8.86837 9.47641 10.59548 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.002448 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.582016 B =11434.681513 C =12546.414378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.047 4.047 3 H 0.084 0.916 4 C -0.626 4.626 5 S 2.610 3.390 6 O -0.956 6.956 7 O -0.957 6.957 8 N -1.113 6.113 9 C 0.162 3.838 10 C -0.067 4.067 11 C -0.185 4.185 12 C -0.077 4.077 13 C -0.212 4.212 14 C 0.156 3.844 15 O -0.216 6.216 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.878 5.878 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.175 4.175 25 C -0.143 4.143 26 C -0.182 4.182 27 C -0.179 4.179 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.422 0.578 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.280 0.720 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 12.149 -21.284 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.067 4.067 3 H 0.102 0.898 4 C -0.755 4.755 5 S 2.703 3.297 6 O -0.947 6.947 7 O -0.947 6.947 8 N -0.873 5.873 9 C 0.036 3.964 10 C -0.069 4.069 11 C -0.204 4.204 12 C -0.095 4.095 13 C -0.232 4.232 14 C 0.104 3.896 15 O -0.121 6.121 16 C -0.466 4.466 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.195 4.195 25 C -0.162 4.162 26 C -0.219 4.219 27 C -0.216 4.216 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.257 0.743 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.085 12.648 -21.331 25.535 hybrid contribution 0.187 -1.533 -0.227 1.561 sum -5.898 11.115 -21.558 24.961 Atomic orbital electron populations 1.22292 0.93549 1.03925 1.03826 1.20429 0.96450 0.98629 0.91223 0.89798 1.30703 1.12413 1.15171 1.17197 1.04957 0.74106 0.75131 0.75501 1.93596 1.29585 1.86892 1.84583 1.93599 1.74814 1.40579 1.85687 1.55603 1.14597 1.73218 1.43876 1.20179 0.79354 1.01285 0.95540 1.19123 1.01258 0.92645 0.93844 1.20601 1.08299 0.98437 0.93086 1.20825 0.97620 0.94871 0.96233 1.21375 1.08315 0.93041 1.00424 1.19053 0.93662 0.84013 0.92917 1.83565 1.75907 1.17927 1.34737 1.20759 1.46237 0.94281 0.85373 0.87598 1.24474 0.95492 0.97013 0.97018 1.69642 1.44221 1.17964 1.19695 0.86171 0.79598 0.79705 0.81336 1.19875 1.20762 1.18399 1.20046 1.09978 0.94357 0.95085 1.22235 1.03987 0.99348 0.90602 1.23091 0.92615 1.02227 1.03923 1.22982 0.98171 1.03421 0.97006 0.91246 0.90625 0.91210 0.84712 0.84514 0.74285 0.89629 0.91256 0.87039 0.86918 0.84834 0.90977 0.86352 0.87297 0.88496 0.88634 0.88656 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.72 37.16 0.32 -1.07 16 2 C -0.05 -0.36 2.54 -90.62 -0.23 -0.59 16 3 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 4 C -0.63 -4.52 5.50 37.16 0.20 -4.31 16 5 S 2.61 27.25 5.11 -107.50 -0.55 26.70 16 6 O -0.96 -12.43 15.82 -57.54 -0.91 -13.34 16 7 O -0.96 -12.88 17.50 -57.54 -1.01 -13.89 16 8 N -1.11 -12.05 5.88 -11.66 -0.07 -12.12 16 9 C 0.16 1.85 6.25 -5.20 -0.03 1.82 16 10 C -0.07 -1.02 5.27 -104.65 -0.55 -1.57 16 11 C -0.18 -2.91 9.70 -39.53 -0.38 -3.29 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.21 -4.34 9.17 -39.39 -0.36 -4.70 16 14 C 0.16 3.38 6.65 -39.11 -0.26 3.12 16 15 O -0.22 -5.45 8.59 0.05 0.00 -5.45 16 16 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 17 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 18 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 19 N -0.88 -24.81 13.96 55.48 0.77 -24.03 16 20 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 24 C -0.17 -3.13 9.65 -39.40 -0.38 -3.51 16 25 C -0.14 -0.96 5.15 -90.61 -0.47 -1.43 16 26 C -0.18 -1.14 10.18 -26.72 -0.27 -1.41 16 27 C -0.18 -1.07 9.73 -26.73 -0.26 -1.33 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.69 5.61 -51.93 -0.29 0.40 16 30 H 0.07 0.45 7.29 -51.93 -0.38 0.07 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.14 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.42 4.61 8.61 -34.48 -0.30 4.32 16 34 H 0.09 0.92 7.64 -51.93 -0.40 0.52 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.54 7.61 -51.93 -0.39 0.14 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -32.66 383.95 -10.22 -42.88 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.53 Total: 6.01 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.86 Total: -28.71 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.71 Total: -36.15 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.92 Total: -32.68 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Atomic # 16 Polarization: 27.25 SS G_CDS: -0.55 Total: 26.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.66 -10.22 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434550495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.449 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds