Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47015 * 2 1 4 4 C 1.53003 * 109.46992 * 120.00095 * 2 1 3 5 5 S 1.81399 * 109.47016 * 294.99716 * 4 2 1 6 6 O 1.42105 * 110.54045 * 68.37885 * 5 4 2 7 7 O 1.42096 * 110.54599 * 291.62613 * 5 4 2 8 8 N 1.65604 * 104.44652 * 179.97438 * 5 4 2 9 9 C 1.46498 * 119.99781 * 65.00527 * 8 5 4 10 10 C 1.50699 * 109.47005 * 164.99917 * 9 8 5 11 11 C 1.38328 * 119.96230 * 269.97666 * 10 9 8 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96947 * 89.99513 * 10 9 8 25 25 C 1.53000 * 109.47011 * 239.99721 * 2 1 3 26 26 C 1.53010 * 117.49676 * 128.62156 * 25 2 1 27 27 C 1.53001 * 117.49511 * 60.00300 * 25 2 1 28 28 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47069 * 300.00051 * 1 2 3 30 30 H 1.09000 * 109.46925 * 60.00284 * 1 2 3 31 31 H 1.08996 * 109.46936 * 174.99521 * 4 2 1 32 32 H 1.09002 * 109.47346 * 55.00022 * 4 2 1 33 33 H 0.97004 * 120.00112 * 244.99820 * 8 5 4 34 34 H 1.08993 * 109.47130 * 44.99707 * 9 8 5 35 35 H 1.09003 * 109.47080 * 284.99570 * 9 8 5 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 39 39 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.03594 * 0.02562 * 24 10 9 41 41 H 1.08995 * 115.55334 * 274.33345 * 25 2 1 42 42 H 1.08999 * 117.49628 * 0.02562 * 26 25 2 43 43 H 1.08994 * 117.49676 * 145.01965 * 26 25 2 44 44 H 1.09004 * 117.49797 * 214.97411 * 27 25 2 45 45 H 1.08995 * 117.50053 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5602 0.2156 2.7266 6 8 0.1520 0.1682 2.9115 7 8 2.2660 1.4474 2.7870 8 7 2.1672 -0.6661 3.9902 9 6 3.6156 -0.8213 4.1460 10 6 3.9200 -1.3305 5.5313 11 6 4.1382 -0.4360 6.5637 12 6 4.4184 -0.8993 7.8361 13 6 4.4745 -2.2574 8.0814 14 6 4.2616 -3.1578 7.0459 15 8 4.3222 -4.4931 7.2826 16 6 4.7115 -4.8795 8.5143 17 1 4.8796 -4.1408 9.2840 18 6 4.8959 -6.2253 8.7927 19 7 5.2763 -6.6022 9.9944 20 14 4.6058 -7.5028 7.4612 21 1 5.8694 -7.7385 6.7175 22 1 4.1537 -8.7729 8.0839 23 1 3.5637 -7.0129 6.5236 24 6 3.9813 -2.6893 5.7687 25 6 2.0400 -0.7213 -1.2492 26 6 3.0742 0.0051 -2.1117 27 6 1.6357 -0.1495 -2.6096 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7996 1.2056 32 1 1.6054 -1.7199 1.2952 33 1 1.5637 -1.0796 4.6272 34 1 4.1023 0.1426 3.9981 35 1 3.9862 -1.5326 3.4079 36 1 4.0896 0.6264 6.3755 37 1 4.5887 -0.1984 8.6400 38 1 4.6882 -2.6186 9.0765 39 1 5.4050 -7.5436 10.1893 40 1 3.8115 -3.3872 4.9622 41 1 2.1267 -1.8045 -1.1642 42 1 3.3915 0.9967 -1.7889 43 1 3.8416 -0.6001 -2.5941 44 1 1.4569 -0.8566 -3.4197 45 1 1.0061 0.7402 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434550495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -79.852834 kcal Electronic energy + Delta-G solvation = -26539.520437 eV Core-core repulsion = 22649.608093 eV Total energy + Delta-G solvation = -3889.912344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93423 -39.17712 -38.76034 -38.14052 -37.01822 -36.00157 -34.48538 -34.44169 -31.89993 -30.85903 -28.58199 -27.37930 -26.43160 -24.52131 -23.31115 -23.10668 -22.32857 -20.97929 -20.30844 -19.71017 -19.14757 -18.48047 -17.57342 -17.16981 -16.84789 -16.64501 -16.50608 -16.03967 -15.82630 -15.63920 -15.34494 -15.13693 -14.89211 -14.56393 -14.29473 -14.23236 -13.99914 -13.79436 -13.61877 -13.29360 -13.10525 -13.06759 -12.98804 -12.65731 -12.54820 -12.46055 -12.45500 -12.34040 -12.27065 -12.06589 -11.92369 -11.51990 -11.31499 -11.06252 -10.90766 -10.86824 -10.36860 -9.76865 -9.10519 -8.49082 -6.22261 -0.73107 0.42496 0.66674 1.33268 1.37093 1.53309 1.82513 2.28823 2.74297 2.79946 2.92118 3.01267 3.13160 3.26951 3.47150 3.72200 3.73678 3.86901 4.08246 4.10051 4.20057 4.29677 4.32248 4.39908 4.44550 4.50708 4.54238 4.59428 4.68528 4.70442 4.82780 4.87487 4.91874 4.96747 5.05378 5.09201 5.23362 5.28779 5.31266 5.38541 5.38868 5.64591 5.71794 5.75932 5.90403 6.02894 6.21991 6.85120 7.58497 8.62468 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.002448 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.582016 B =11434.681513 C =12546.414378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.053 4.053 3 H 0.083 0.917 4 C -0.606 4.606 5 S 2.616 3.384 6 O -0.987 6.987 7 O -0.991 6.991 8 N -1.115 6.115 9 C 0.159 3.841 10 C -0.055 4.055 11 C -0.169 4.169 12 C -0.079 4.079 13 C -0.233 4.233 14 C 0.117 3.883 15 O -0.242 6.242 16 C -0.399 4.399 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.167 4.167 25 C -0.146 4.146 26 C -0.185 4.185 27 C -0.180 4.180 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.421 0.579 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 12.980 -24.932 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.073 4.073 3 H 0.101 0.899 4 C -0.738 4.738 5 S 2.714 3.286 6 O -0.978 6.978 7 O -0.981 6.981 8 N -0.875 5.875 9 C 0.034 3.966 10 C -0.057 4.057 11 C -0.188 4.188 12 C -0.097 4.097 13 C -0.253 4.253 14 C 0.068 3.932 15 O -0.150 6.150 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.183 1.183 24 C -0.187 4.187 25 C -0.165 4.165 26 C -0.222 4.222 27 C -0.217 4.217 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.240 13.551 -24.956 29.075 hybrid contribution 0.186 -1.423 0.755 1.622 sum -6.054 12.127 -24.201 27.738 Atomic orbital electron populations 1.22343 0.94059 1.04206 1.03532 1.20501 0.96159 0.98914 0.91755 0.89880 1.30537 1.14161 1.15097 1.14039 1.04625 0.73077 0.74771 0.76170 1.93559 1.31470 1.87308 1.85458 1.93553 1.75082 1.42960 1.86519 1.55491 1.14256 1.73136 1.44575 1.20356 0.79802 1.02879 0.93606 1.19542 0.98836 0.91389 0.95923 1.21097 1.05165 1.00231 0.92274 1.21113 0.96917 0.93636 0.98027 1.21379 1.09794 0.94775 0.99309 1.19639 0.95501 0.83137 0.94906 1.83506 1.78325 1.19849 1.33296 1.20681 1.46502 0.94239 0.86070 0.90298 1.25315 0.95508 0.98956 0.99269 1.69735 1.46606 1.18604 1.21592 0.85181 0.79636 0.77204 0.78479 1.18972 1.19593 1.18337 1.20368 1.08499 0.95965 0.93870 1.22221 1.04383 0.99617 0.90272 1.23169 0.92884 1.02307 1.03830 1.23067 0.98117 1.03633 0.96894 0.90705 0.92316 0.90206 0.82218 0.82408 0.74397 0.88274 0.87792 0.83944 0.84453 0.87540 0.90623 0.84414 0.86566 0.88553 0.87966 0.87920 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.72 71.98 0.63 -1.87 16 2 C -0.05 -0.64 2.54 -10.79 -0.03 -0.67 16 3 H 0.08 1.02 7.90 -2.39 -0.02 1.00 16 4 C -0.61 -6.36 5.50 71.98 0.40 -5.97 16 5 S 2.62 48.06 5.11 -56.49 -0.29 47.77 16 6 O -0.99 -24.39 15.82 -127.65 -2.02 -26.41 16 7 O -0.99 -24.48 17.50 -127.65 -2.23 -26.71 16 8 N -1.12 -20.43 5.88 -190.80 -1.12 -21.55 16 9 C 0.16 2.91 6.25 85.63 0.54 3.44 16 10 C -0.06 -1.49 5.27 -19.88 -0.10 -1.60 16 11 C -0.17 -4.75 9.70 22.30 0.22 -4.54 16 12 C -0.08 -2.61 10.04 22.25 0.22 -2.38 16 13 C -0.23 -9.84 9.17 22.39 0.21 -9.64 16 14 C 0.12 5.15 6.65 22.58 0.15 5.30 16 15 O -0.24 -12.58 8.59 -22.74 -0.20 -12.77 16 16 C -0.40 -22.93 9.95 67.92 0.68 -22.26 16 17 H 0.08 4.79 5.44 -2.91 -0.02 4.78 16 18 C 0.01 0.44 5.49 84.83 0.47 0.91 16 19 N -0.92 -54.60 13.96 21.61 0.30 -54.30 16 20 Si 0.97 44.11 28.62 68.60 1.96 46.07 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 C -0.17 -5.65 9.65 22.39 0.22 -5.43 16 25 C -0.15 -1.48 5.15 -10.79 -0.06 -1.53 16 26 C -0.19 -1.79 10.18 30.60 0.31 -1.48 16 27 C -0.18 -1.68 9.73 30.60 0.30 -1.38 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.01 5.61 -2.39 -0.01 0.99 16 30 H 0.08 0.88 7.29 -2.39 -0.02 0.86 16 31 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.42 8.09 8.61 -96.74 -0.83 7.26 16 34 H 0.10 1.63 7.64 -2.39 -0.02 1.61 16 35 H 0.10 1.25 8.08 -2.39 -0.02 1.23 16 36 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.11 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.12 1.03 8.11 -2.39 -0.02 1.01 16 42 H 0.10 0.93 8.05 -2.39 -0.02 0.91 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.87 7.61 -2.39 -0.02 0.85 16 Total: -1.00 -74.53 383.95 0.71 -73.82 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.17 Total: 23.17 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 4.13 Total: -49.09 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -0.82 Total: -75.85 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -4.45 Total: -65.90 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.29 Total: 47.77 kcal Total: -74.53 0.71 -73.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434550495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.031 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds