Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81400 * 109.47374 * 2 1 4 4 O 1.42095 * 108.57952 * 65.51306 * 3 2 1 5 5 O 1.42101 * 108.57729 * 294.48337 * 3 2 1 6 6 C 1.81403 * 101.92065 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.47095 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47010 * 179.97438 * 7 6 3 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09004 * 109.46920 * 300.00376 * 1 2 3 28 28 H 1.09006 * 109.47099 * 59.99749 * 1 2 3 29 29 H 1.08994 * 109.47641 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47075 * 239.99430 * 2 1 3 31 31 H 1.09006 * 109.47099 * 120.00251 * 2 1 3 32 32 H 1.09001 * 109.47269 * 60.00118 * 6 3 2 33 33 H 1.08998 * 109.46963 * 299.99650 * 6 3 2 34 34 H 1.08992 * 109.47153 * 59.99642 * 7 6 3 35 35 H 1.09003 * 109.46640 * 300.00064 * 7 6 3 36 36 H 1.09001 * 109.47212 * 60.00084 * 8 7 6 37 37 H 1.08991 * 109.47261 * 299.99917 * 8 7 6 38 38 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2257 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6282 2.8347 0.0015 8 6 6.1449 2.6336 0.0028 9 7 6.8106 3.9387 0.0029 10 6 8.1565 4.0087 0.0035 11 8 8.8165 2.9912 0.0044 12 6 8.8412 5.3511 0.0042 13 6 10.3352 5.1531 0.0053 14 6 11.0318 5.1587 1.1924 15 6 12.4069 4.9834 1.1957 16 6 13.0950 4.7938 0.0070 17 6 12.4183 4.7783 -1.1909 18 6 11.0222 4.9552 -1.2064 19 6 10.3160 4.9404 -2.4313 20 1 9.2716 4.6660 -2.4492 21 6 10.9704 5.2812 -3.6204 22 7 12.0195 6.0623 -3.5891 23 14 10.3460 4.6209 -5.2525 24 1 11.2064 5.1259 -6.3525 25 1 10.3859 3.1366 -5.2338 26 1 8.9491 5.0759 -5.4687 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.2260 0.9145 -0.8890 33 1 4.2252 0.9148 0.8910 34 1 4.3351 3.3916 0.8914 35 1 4.3359 3.3921 -0.8885 36 1 6.4383 2.0766 -0.8869 37 1 6.4367 2.0765 0.8930 38 1 6.2826 4.7524 0.0026 39 1 8.5481 5.9080 0.8942 40 1 8.5489 5.9085 -0.8857 41 1 10.5059 5.3050 2.1242 42 1 12.9461 4.9942 2.1314 43 1 14.1663 4.6578 0.0214 44 1 12.9562 4.6301 -2.1155 45 1 12.2935 6.4730 -2.7542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436747156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -110.703915 kcal Electronic energy + Delta-G solvation = -26370.830254 eV Core-core repulsion = 22479.580106 eV Total energy + Delta-G solvation = -3891.250148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.33186 -37.59998 -37.35487 -36.44235 -35.78031 -33.82424 -33.66227 -32.84970 -31.69799 -29.19019 -27.81879 -26.12787 -24.88120 -24.37337 -22.08594 -20.91920 -20.70847 -19.49317 -19.23714 -17.73992 -17.42923 -16.85787 -16.42943 -16.30049 -15.83860 -15.47260 -14.97410 -14.80266 -14.68157 -14.12470 -13.96045 -13.81625 -13.61040 -13.15188 -13.11468 -12.95087 -12.79673 -12.45045 -12.36177 -12.28470 -12.23222 -12.07308 -11.99360 -11.72040 -11.48169 -11.21667 -11.18062 -11.05799 -10.83120 -10.72843 -10.44547 -10.37077 -9.62857 -9.35913 -9.24202 -8.93422 -8.79515 -7.53083 -7.48109 -7.09841 -4.39557 -0.48111 2.31078 2.76495 2.87575 3.12064 3.17250 3.28647 3.30910 3.38893 3.55984 3.56497 4.04403 4.10706 4.12641 4.28211 4.40176 4.59643 4.62050 4.68014 4.97263 5.08778 5.11632 5.15331 5.32300 5.39577 5.42474 5.66849 5.73383 5.83491 5.96073 6.09496 6.19817 6.35330 6.38706 6.68762 6.72108 7.02757 7.23618 7.44668 7.69474 7.85136 7.87225 7.90098 7.98275 8.23697 8.37485 8.79568 8.82244 8.95388 10.09732 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002345 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.803228 B =11938.961105 C =13320.724472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.616 4.616 3 S 2.418 3.582 4 O -0.937 6.937 5 O -0.935 6.935 6 C -0.609 4.609 7 C -0.124 4.124 8 C 0.129 3.871 9 N -0.748 5.748 10 C 0.515 3.485 11 O -0.521 6.521 12 C -0.070 4.070 13 C -0.185 4.185 14 C -0.069 4.069 15 C -0.254 4.254 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.517 4.517 20 H 0.072 0.928 21 C 0.040 3.960 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.155 -8.987 5.296 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.745 4.745 3 S 2.600 3.400 4 O -0.934 6.934 5 O -0.932 6.932 6 C -0.738 4.738 7 C -0.163 4.163 8 C 0.004 3.996 9 N -0.403 5.403 10 C 0.303 3.697 11 O -0.394 6.394 12 C -0.110 4.110 13 C -0.187 4.187 14 C -0.087 4.087 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.545 4.545 20 H 0.090 0.910 21 C -0.182 4.182 22 N -0.422 5.422 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.773 -8.964 3.659 22.016 hybrid contribution -0.008 -0.620 1.742 1.849 sum -19.782 -9.583 5.400 22.634 Atomic orbital electron populations 1.21516 0.90335 1.04896 1.03807 1.30224 1.07596 1.25002 1.11632 1.08149 0.78171 0.78215 0.75474 1.93596 1.81088 1.73116 1.45585 1.93606 1.81033 1.73068 1.45501 1.30267 1.24487 1.06889 1.12185 1.21510 0.96424 0.93701 1.04660 1.21137 0.89217 0.86622 1.02673 1.46133 1.07283 1.08263 1.78639 1.21239 0.80854 0.92898 0.74748 1.90681 1.64377 1.37205 1.47181 1.20251 0.94625 0.93205 1.02908 1.19014 0.91879 1.14065 0.93763 1.20358 0.94036 0.98860 0.95456 1.20262 0.94125 1.16681 0.96226 1.20602 0.97315 0.99258 0.93292 1.21136 0.95069 1.10754 0.96567 1.17399 0.91533 0.87649 0.92122 1.20435 0.99290 1.42368 0.92370 0.90996 1.26931 0.93468 0.93279 1.04500 1.70451 1.20536 1.17695 1.33511 0.83709 0.76539 0.77298 0.74032 1.19887 1.20090 1.20199 0.90800 0.90756 0.90080 0.84904 0.84960 0.84459 0.84568 0.89487 0.89335 0.91307 0.91527 0.76888 0.90536 0.88552 0.89607 0.89462 0.89399 0.87765 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.92 37.16 0.37 -0.31 16 2 C -0.62 -2.29 6.52 37.16 0.24 -2.04 16 3 S 2.42 16.33 4.72 -107.50 -0.51 15.82 16 4 O -0.94 -9.62 18.10 -57.83 -1.05 -10.67 16 5 O -0.93 -9.86 18.10 -57.83 -1.05 -10.91 16 6 C -0.61 -3.41 5.81 37.16 0.22 -3.19 16 7 C -0.12 -1.06 5.34 -26.73 -0.14 -1.20 16 8 C 0.13 1.54 5.67 -4.04 -0.02 1.52 16 9 N -0.75 -10.56 5.56 -60.30 -0.33 -10.89 16 10 C 0.52 9.97 7.46 -10.99 -0.08 9.89 16 11 O -0.52 -12.47 16.03 5.56 0.09 -12.38 16 12 C -0.07 -1.37 5.18 -29.03 -0.15 -1.52 16 13 C -0.19 -4.46 4.43 -103.91 -0.46 -4.93 16 14 C -0.07 -1.59 9.66 -39.66 -0.38 -1.97 16 15 C -0.25 -5.88 10.05 -39.29 -0.39 -6.28 16 16 C -0.09 -2.08 10.02 -39.66 -0.40 -2.48 16 17 C -0.22 -5.72 7.95 -38.87 -0.31 -6.03 16 18 C 0.12 3.09 5.30 -106.82 -0.57 2.52 16 19 C -0.52 -13.63 8.08 -37.74 -0.30 -13.94 16 20 H 0.07 1.86 6.73 -52.49 -0.35 1.51 16 21 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 22 N -0.80 -21.23 12.31 55.55 0.68 -20.55 16 23 Si 1.06 22.00 30.00 -169.99 -5.10 16.90 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.14 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.14 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 39 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.10 2.84 6.49 -52.49 -0.34 2.49 16 45 H 0.30 8.15 6.68 -40.82 -0.27 7.88 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -37.40 389.69 -10.67 -48.08 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.81 Total: 7.74 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.47 Total: -29.02 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.35 Total: -31.44 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -2.00 Total: -33.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.10 Total: 16.90 kcal Atomic # 16 Polarization: 16.33 SS G_CDS: -0.51 Total: 15.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.40 -10.67 -48.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436747156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.628 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds