Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81400 * 109.47374 * 2 1 4 4 O 1.42095 * 108.57952 * 65.51306 * 3 2 1 5 5 O 1.42101 * 108.57729 * 294.48337 * 3 2 1 6 6 C 1.81403 * 101.92065 * 179.97438 * 3 2 1 7 7 C 1.53001 * 109.47095 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47010 * 179.97438 * 7 6 3 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09004 * 109.46920 * 300.00376 * 1 2 3 28 28 H 1.09006 * 109.47099 * 59.99749 * 1 2 3 29 29 H 1.08994 * 109.47641 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47075 * 239.99430 * 2 1 3 31 31 H 1.09006 * 109.47099 * 120.00251 * 2 1 3 32 32 H 1.09001 * 109.47269 * 60.00118 * 6 3 2 33 33 H 1.08998 * 109.46963 * 299.99650 * 6 3 2 34 34 H 1.08992 * 109.47153 * 59.99642 * 7 6 3 35 35 H 1.09003 * 109.46640 * 300.00064 * 7 6 3 36 36 H 1.09001 * 109.47212 * 60.00084 * 8 7 6 37 37 H 1.08991 * 109.47261 * 299.99917 * 8 7 6 38 38 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 39 39 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 40 40 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 41 41 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 43 43 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 44 44 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 45 45 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2257 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6282 2.8347 0.0015 8 6 6.1449 2.6336 0.0028 9 7 6.8106 3.9387 0.0029 10 6 8.1565 4.0087 0.0035 11 8 8.8165 2.9912 0.0044 12 6 8.8412 5.3511 0.0042 13 6 10.3352 5.1531 0.0053 14 6 11.0318 5.1587 1.1924 15 6 12.4069 4.9834 1.1957 16 6 13.0950 4.7938 0.0070 17 6 12.4183 4.7783 -1.1909 18 6 11.0222 4.9552 -1.2064 19 6 10.3160 4.9404 -2.4313 20 1 9.2716 4.6660 -2.4492 21 6 10.9704 5.2812 -3.6204 22 7 12.0195 6.0623 -3.5891 23 14 10.3460 4.6209 -5.2525 24 1 11.2064 5.1259 -6.3525 25 1 10.3859 3.1366 -5.2338 26 1 8.9491 5.0759 -5.4687 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.2260 0.9145 -0.8890 33 1 4.2252 0.9148 0.8910 34 1 4.3351 3.3916 0.8914 35 1 4.3359 3.3921 -0.8885 36 1 6.4383 2.0766 -0.8869 37 1 6.4367 2.0765 0.8930 38 1 6.2826 4.7524 0.0026 39 1 8.5481 5.9080 0.8942 40 1 8.5489 5.9085 -0.8857 41 1 10.5059 5.3050 2.1242 42 1 12.9461 4.9942 2.1314 43 1 14.1663 4.6578 0.0214 44 1 12.9562 4.6301 -2.1155 45 1 12.2935 6.4730 -2.7542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436747156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -137.713356 kcal Electronic energy + Delta-G solvation = -26372.001471 eV Core-core repulsion = 22479.580106 eV Total energy + Delta-G solvation = -3892.421365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85927 -39.36149 -37.99008 -37.11139 -36.80874 -35.73166 -34.01915 -33.96748 -33.29881 -31.09945 -29.16917 -27.40986 -26.60538 -24.91390 -22.86933 -22.81341 -22.30456 -21.08439 -19.78158 -19.60658 -18.09749 -17.76580 -17.42347 -17.14925 -16.85388 -16.74994 -16.37068 -16.25444 -15.81971 -15.53086 -15.25577 -15.05013 -14.63626 -14.21833 -14.16389 -13.88693 -13.75567 -13.72756 -13.48264 -13.36170 -13.12034 -13.02384 -13.00933 -12.97391 -12.75270 -12.59781 -12.35742 -12.23814 -12.09679 -11.98311 -11.76357 -11.48378 -11.22800 -11.20776 -10.84776 -10.79244 -10.06265 -9.43989 -9.42385 -9.05077 -6.39007 -0.96756 0.91611 0.99362 1.47590 1.62727 1.76578 1.78334 1.86822 2.26742 2.32073 2.70561 2.75361 3.11681 3.56146 3.68772 3.76784 3.77283 3.85113 3.97819 4.08761 4.29246 4.33607 4.39534 4.42372 4.49860 4.51122 4.58245 4.71599 4.74511 4.75676 4.89175 4.89983 4.96688 5.03654 5.08521 5.13452 5.33206 5.49847 5.50892 5.80541 5.84782 5.99424 6.05856 6.30119 6.45866 6.62610 6.87306 7.02809 7.39094 8.09072 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002345 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.803228 B =11938.961105 C =13320.724472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.595 4.595 3 S 2.418 3.582 4 O -0.980 6.980 5 O -0.982 6.982 6 C -0.603 4.603 7 C -0.127 4.127 8 C 0.125 3.875 9 N -0.729 5.729 10 C 0.516 3.484 11 O -0.575 6.575 12 C -0.071 4.071 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.251 4.251 16 C -0.097 4.097 17 C -0.245 4.245 18 C 0.084 3.916 19 C -0.540 4.540 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.820 5.820 23 Si 1.107 2.893 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.253 1.253 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.415 0.585 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.877 -10.375 6.355 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.727 4.727 3 S 2.606 3.394 4 O -0.977 6.977 5 O -0.980 6.980 6 C -0.733 4.733 7 C -0.166 4.166 8 C 0.000 4.000 9 N -0.383 5.383 10 C 0.304 3.696 11 O -0.453 6.453 12 C -0.111 4.111 13 C -0.193 4.193 14 C -0.099 4.099 15 C -0.270 4.270 16 C -0.115 4.115 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.569 4.569 20 H 0.087 0.913 21 C -0.213 4.213 22 N -0.443 5.443 23 Si 0.925 3.075 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.177 1.177 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.553 -10.277 4.739 24.344 hybrid contribution 0.508 -0.249 1.594 1.691 sum -21.045 -10.526 6.333 24.368 Atomic orbital electron populations 1.21689 0.91074 1.06004 1.03407 1.30052 1.06858 1.21351 1.14466 1.07841 0.78432 0.79547 0.73606 1.93539 1.82021 1.75425 1.46750 1.93546 1.82041 1.75474 1.46890 1.30212 1.22601 1.05788 1.14728 1.21518 0.93994 0.95812 1.05231 1.21301 0.91201 0.85225 1.02235 1.45946 1.05838 1.10247 1.76303 1.21086 0.82280 0.91856 0.74365 1.90660 1.65890 1.38569 1.50169 1.20287 0.92112 0.94020 1.04653 1.19530 0.94408 1.12064 0.93269 1.20811 0.94362 0.98168 0.96511 1.20720 0.94648 1.14674 0.96980 1.20897 0.98606 0.98975 0.93044 1.21145 0.95599 1.12968 0.96746 1.17795 0.91984 0.88484 0.93546 1.20537 0.99335 1.43849 0.93155 0.91310 1.28237 0.92960 0.92472 1.07592 1.70555 1.21954 1.19332 1.32508 0.83129 0.77279 0.76704 0.70348 1.19500 1.19909 1.17709 0.91279 0.91409 0.88104 0.82264 0.82080 0.82280 0.81886 0.88693 0.89290 0.92348 0.91412 0.74874 0.86792 0.88670 0.86261 0.86320 0.87287 0.89890 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.92 71.98 0.71 -0.45 16 2 C -0.60 -2.48 6.52 71.98 0.47 -2.01 16 3 S 2.42 29.09 4.72 -56.49 -0.27 28.82 16 4 O -0.98 -19.49 18.10 -127.37 -2.30 -21.79 16 5 O -0.98 -20.37 18.10 -127.37 -2.31 -22.67 16 6 C -0.60 -5.09 5.81 71.98 0.42 -4.67 16 7 C -0.13 -1.91 5.34 30.59 0.16 -1.74 16 8 C 0.12 2.79 5.67 86.38 0.49 3.28 16 9 N -0.73 -19.40 5.56 -463.07 -2.57 -21.97 16 10 C 0.52 19.50 7.46 87.66 0.65 20.16 16 11 O -0.57 -27.52 16.03 -3.04 -0.05 -27.57 16 12 C -0.07 -2.70 5.18 29.10 0.15 -2.54 16 13 C -0.19 -9.14 4.43 -19.40 -0.09 -9.22 16 14 C -0.08 -3.57 9.66 22.22 0.21 -3.35 16 15 C -0.25 -11.24 10.05 22.46 0.23 -11.01 16 16 C -0.10 -4.70 10.02 22.22 0.22 -4.48 16 17 C -0.25 -13.43 7.95 22.73 0.18 -13.25 16 18 C 0.08 4.62 5.30 -21.29 -0.11 4.51 16 19 C -0.54 -29.32 8.08 23.46 0.19 -29.13 16 20 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 21 C 0.00 0.18 4.94 85.25 0.42 0.60 16 22 N -0.82 -45.25 12.31 21.82 0.27 -44.98 16 23 Si 1.11 44.80 30.00 68.60 2.06 46.85 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 8.16 8.47 -92.71 -0.79 7.38 16 39 H 0.11 3.38 8.05 -2.39 -0.02 3.36 16 40 H 0.10 3.62 7.06 -2.39 -0.02 3.61 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 44 H 0.08 4.78 6.49 -2.91 -0.02 4.76 16 45 H 0.28 16.27 6.68 -92.71 -0.62 15.65 16 Total: -1.00 -85.11 389.69 -0.50 -85.60 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.36 Total: 31.03 kcal Atomic # 6 Polarization: -57.65 SS G_CDS: 4.32 Total: -53.33 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -2.30 Total: -66.95 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -4.66 Total: -72.03 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.06 Total: 46.85 kcal Atomic # 16 Polarization: 29.09 SS G_CDS: -0.27 Total: 28.82 kcal Total: -85.11 -0.50 -85.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436747156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.109 kcal (2) G-P(sol) polarization free energy of solvation -85.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds