Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.52999 * 109.47477 * 119.99677 * 2 1 3 5 5 S 1.81403 * 109.47177 * 295.00226 * 4 2 1 6 6 O 1.42108 * 110.54145 * 68.37229 * 5 4 2 7 7 O 1.42100 * 110.54446 * 291.62182 * 5 4 2 8 8 N 1.65601 * 104.45099 * 179.97438 * 5 4 2 9 9 C 1.46496 * 119.99853 * 64.99932 * 8 5 4 10 10 C 1.50700 * 109.46908 * 165.00060 * 9 8 5 11 11 C 1.38298 * 119.93471 * 269.73009 * 10 9 8 12 12 C 1.38097 * 120.07395 * 179.72855 * 11 10 9 13 13 C 1.38879 * 119.93011 * 0.56344 * 12 11 10 14 14 O 1.35752 * 120.07155 * 179.68822 * 13 12 11 15 15 C 1.34824 * 116.99782 * 174.48756 * 14 13 12 16 16 H 1.07998 * 120.00522 * 5.05499 * 15 14 13 17 17 C 1.38658 * 119.99783 * 185.05039 * 15 14 13 18 18 N 1.31552 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46988 * 60.00678 * 19 17 15 21 21 H 1.48500 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47248 * 300.00388 * 19 17 15 23 23 C 1.38883 * 119.85860 * 359.70887 * 13 12 11 24 24 C 1.38105 * 119.93279 * 359.97438 * 23 13 12 25 25 C 1.52996 * 109.47339 * 239.99981 * 2 1 3 26 26 C 1.52995 * 117.49991 * 128.62040 * 25 2 1 27 27 C 1.52995 * 117.49927 * 59.99770 * 25 2 1 28 28 H 1.09001 * 109.47104 * 299.99976 * 1 2 3 29 29 H 1.08994 * 109.47404 * 60.00259 * 1 2 3 30 30 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47370 * 175.00062 * 4 2 1 32 32 H 1.09007 * 109.47237 * 54.99774 * 4 2 1 33 33 H 0.97002 * 119.99618 * 244.72964 * 8 5 4 34 34 H 1.08996 * 109.47166 * 284.99563 * 9 8 5 35 35 H 1.09000 * 109.47128 * 45.00278 * 9 8 5 36 36 H 1.08007 * 119.96378 * 359.97438 * 11 10 9 37 37 H 1.08006 * 120.03932 * 180.27298 * 12 11 10 38 38 H 0.97005 * 120.00304 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.03296 * 179.97438 * 23 13 12 40 40 H 1.07994 * 119.96597 * 180.02562 * 24 23 13 41 41 H 1.08997 * 115.54926 * 274.32816 * 25 2 1 42 42 H 1.09000 * 117.49927 * 0.02562 * 26 25 2 43 43 H 1.09006 * 117.49798 * 145.02185 * 26 25 2 44 44 H 1.09009 * 117.49987 * 214.98280 * 27 25 2 45 45 H 1.09004 * 117.50000 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 1.5601 0.2157 2.7266 6 8 0.1519 0.1684 2.9115 7 8 2.2659 1.4476 2.7870 8 7 2.1673 -0.6657 3.9903 9 6 3.6156 -0.8209 4.1460 10 6 3.9201 -1.3299 5.5314 11 6 4.1432 -0.4350 6.5619 12 6 4.4170 -0.8983 7.8337 13 6 4.4797 -2.2646 8.0749 14 8 4.7549 -2.7231 9.3227 15 6 4.6882 -4.0561 9.5134 16 1 4.5058 -4.7131 8.6758 17 6 4.8540 -4.5837 10.7849 18 7 5.0758 -3.7835 11.8052 19 14 4.7610 -6.4306 11.0492 20 1 5.8137 -7.0996 10.2433 21 1 4.9693 -6.7358 12.4875 22 1 3.4257 -6.9244 10.6272 23 6 4.2608 -3.1607 7.0367 24 6 3.9810 -2.6912 5.7685 25 6 2.0400 -0.7212 -1.2492 26 6 3.0741 0.0052 -2.1116 27 6 1.6357 -0.1496 -2.6095 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2953 33 1 1.5639 -1.0760 4.6295 34 1 3.9863 -1.5322 3.4080 35 1 4.1023 0.1431 3.9980 36 1 4.0994 0.6274 6.3727 37 1 4.5868 -0.1989 8.6390 38 1 5.1915 -4.1525 12.6949 39 1 4.3093 -4.2238 7.2210 40 1 3.8103 -3.3875 4.9609 41 1 2.1268 -1.8044 -1.1641 42 1 3.3914 0.9968 -1.7888 43 1 3.8416 -0.6002 -2.5941 44 1 1.4568 -0.8567 -3.4196 45 1 1.0060 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463006418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -60.816988 kcal Electronic energy + Delta-G solvation = -26308.068626 eV Core-core repulsion = 22418.981738 eV Total energy + Delta-G solvation = -3889.086888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.19038 -38.68686 -37.29478 -37.01612 -36.05660 -34.69111 -33.94405 -32.35149 -30.28071 -29.53089 -27.96583 -25.80156 -24.54369 -23.97154 -22.68460 -22.06298 -20.72278 -20.43468 -19.43369 -18.10607 -17.80806 -17.15958 -16.78295 -16.27766 -16.03436 -15.32480 -14.94913 -14.73041 -14.59285 -14.38777 -14.11174 -13.80676 -13.70662 -13.59549 -13.18090 -12.97284 -12.79961 -12.57033 -12.33781 -12.15567 -12.11140 -12.05648 -12.01636 -11.72662 -11.69613 -11.53379 -11.32417 -10.97692 -10.87250 -10.78511 -10.72607 -10.51436 -10.45527 -10.39427 -9.50914 -9.39568 -8.91412 -8.28593 -7.32766 -6.53016 -4.11954 0.11596 2.06235 2.13074 2.76709 3.08152 3.09701 3.12404 3.32359 3.61777 3.89936 3.96651 4.09985 4.22360 4.41800 4.47502 4.58454 4.68303 4.83841 4.93221 5.00042 5.02418 5.12430 5.19076 5.20798 5.23912 5.27312 5.43523 5.48687 5.53344 5.61117 5.62844 5.70599 5.75972 5.82129 5.90634 5.95199 6.12644 6.33071 6.60135 6.80252 6.91941 7.01166 7.15871 7.25733 7.34699 7.71547 7.91309 8.91980 9.60469 10.64371 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.002014 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.584423 B =13897.407450 C =14293.706140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.048 4.048 3 H 0.084 0.916 4 C -0.626 4.626 5 S 2.608 3.392 6 O -0.959 6.959 7 O -0.958 6.958 8 N -1.113 6.113 9 C 0.173 3.827 10 C -0.206 4.206 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.160 3.840 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.238 4.238 24 C -0.054 4.054 25 C -0.142 4.142 26 C -0.182 4.182 27 C -0.179 4.179 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.420 0.580 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 4.319 -24.921 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.068 4.068 3 H 0.102 0.898 4 C -0.754 4.754 5 S 2.700 3.300 6 O -0.949 6.949 7 O -0.948 6.948 8 N -0.874 5.874 9 C 0.048 3.952 10 C -0.209 4.209 11 C -0.073 4.073 12 C -0.214 4.214 13 C 0.105 3.895 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.257 4.257 24 C -0.073 4.073 25 C -0.161 4.161 26 C -0.219 4.219 27 C -0.216 4.216 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.682 5.304 -24.496 25.700 hybrid contribution 0.142 -1.898 0.104 1.906 sum -5.540 3.406 -24.392 25.244 Atomic orbital electron populations 1.22286 0.93566 1.03865 1.03844 1.20426 0.96436 0.98658 0.91234 0.89811 1.30703 1.12304 1.15089 1.17341 1.05021 0.74099 0.75247 0.75595 1.93589 1.29754 1.86953 1.84610 1.93599 1.74804 1.40680 1.85696 1.55737 1.15082 1.73269 1.43302 1.20004 0.78792 1.00662 0.95722 1.19069 1.13965 0.93548 0.94282 1.20574 0.96652 0.98360 0.91686 1.20235 1.10779 0.93034 0.97349 1.19446 0.91300 0.92739 0.86019 1.83980 1.74346 1.25612 1.23616 1.21299 1.51492 0.79104 0.95097 0.88988 1.25323 0.96369 1.00595 0.94210 1.70025 1.43913 1.35468 0.99894 0.85761 0.79192 0.80364 0.77999 1.19452 1.20218 1.19445 1.21147 1.11138 1.00363 0.93048 1.20614 0.96697 0.94066 0.95895 1.22230 1.03981 0.99296 0.90637 1.23091 0.92606 1.02253 1.03926 1.22981 0.98179 1.03431 0.96998 0.90590 0.91242 0.91304 0.84807 0.84676 0.74459 0.92019 0.90335 0.86730 0.86332 0.91816 0.85437 0.87375 0.87354 0.88484 0.88653 0.88672 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.72 37.16 0.32 -1.06 16 2 C -0.05 -0.36 2.54 -90.62 -0.23 -0.59 16 3 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 4 C -0.63 -4.47 5.50 37.16 0.20 -4.27 16 5 S 2.61 27.86 5.11 -107.50 -0.55 27.31 16 6 O -0.96 -12.70 15.82 -57.54 -0.91 -13.61 16 7 O -0.96 -13.36 17.50 -57.54 -1.01 -14.36 16 8 N -1.11 -12.27 5.88 -11.66 -0.07 -12.34 16 9 C 0.17 2.01 6.25 -5.20 -0.03 1.98 16 10 C -0.21 -3.17 5.28 -104.58 -0.55 -3.72 16 11 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 12 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 13 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 14 O -0.17 -4.79 9.76 0.06 0.00 -4.79 16 15 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 16 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 19 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 25 C -0.14 -0.93 5.15 -90.63 -0.47 -1.40 16 26 C -0.18 -1.12 10.18 -26.74 -0.27 -1.39 16 27 C -0.18 -1.05 9.73 -26.74 -0.26 -1.31 16 28 H 0.08 0.70 5.61 -51.93 -0.29 0.41 16 29 H 0.07 0.45 7.29 -51.93 -0.38 0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.42 4.68 8.60 -34.47 -0.30 4.38 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.08 0.89 7.64 -51.93 -0.40 0.50 16 36 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.10 0.53 7.61 -51.93 -0.39 0.14 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -33.50 385.06 -10.38 -43.88 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.51 Total: 6.91 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -2.87 Total: -29.82 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.69 Total: -36.23 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.92 Total: -32.76 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 27.86 SS G_CDS: -0.55 Total: 27.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.50 -10.38 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463006418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.934 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds