Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.52999 * 109.47477 * 119.99677 * 2 1 3 5 5 S 1.81403 * 109.47177 * 295.00226 * 4 2 1 6 6 O 1.42108 * 110.54145 * 68.37229 * 5 4 2 7 7 O 1.42100 * 110.54446 * 291.62182 * 5 4 2 8 8 N 1.65601 * 104.45099 * 179.97438 * 5 4 2 9 9 C 1.46496 * 119.99853 * 64.99932 * 8 5 4 10 10 C 1.50700 * 109.46908 * 165.00060 * 9 8 5 11 11 C 1.38298 * 119.93471 * 269.73009 * 10 9 8 12 12 C 1.38097 * 120.07395 * 179.72855 * 11 10 9 13 13 C 1.38879 * 119.93011 * 0.56344 * 12 11 10 14 14 O 1.35752 * 120.07155 * 179.68822 * 13 12 11 15 15 C 1.34824 * 116.99782 * 174.48756 * 14 13 12 16 16 H 1.07998 * 120.00522 * 5.05499 * 15 14 13 17 17 C 1.38658 * 119.99783 * 185.05039 * 15 14 13 18 18 N 1.31552 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46988 * 60.00678 * 19 17 15 21 21 H 1.48500 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47248 * 300.00388 * 19 17 15 23 23 C 1.38883 * 119.85860 * 359.70887 * 13 12 11 24 24 C 1.38105 * 119.93279 * 359.97438 * 23 13 12 25 25 C 1.52996 * 109.47339 * 239.99981 * 2 1 3 26 26 C 1.52995 * 117.49991 * 128.62040 * 25 2 1 27 27 C 1.52995 * 117.49927 * 59.99770 * 25 2 1 28 28 H 1.09001 * 109.47104 * 299.99976 * 1 2 3 29 29 H 1.08994 * 109.47404 * 60.00259 * 1 2 3 30 30 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47370 * 175.00062 * 4 2 1 32 32 H 1.09007 * 109.47237 * 54.99774 * 4 2 1 33 33 H 0.97002 * 119.99618 * 244.72964 * 8 5 4 34 34 H 1.08996 * 109.47166 * 284.99563 * 9 8 5 35 35 H 1.09000 * 109.47128 * 45.00278 * 9 8 5 36 36 H 1.08007 * 119.96378 * 359.97438 * 11 10 9 37 37 H 1.08006 * 120.03932 * 180.27298 * 12 11 10 38 38 H 0.97005 * 120.00304 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.03296 * 179.97438 * 23 13 12 40 40 H 1.07994 * 119.96597 * 180.02562 * 24 23 13 41 41 H 1.08997 * 115.54926 * 274.32816 * 25 2 1 42 42 H 1.09000 * 117.49927 * 0.02562 * 26 25 2 43 43 H 1.09006 * 117.49798 * 145.02185 * 26 25 2 44 44 H 1.09009 * 117.49987 * 214.98280 * 27 25 2 45 45 H 1.09004 * 117.50000 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 1.5601 0.2157 2.7266 6 8 0.1519 0.1684 2.9115 7 8 2.2659 1.4476 2.7870 8 7 2.1673 -0.6657 3.9903 9 6 3.6156 -0.8209 4.1460 10 6 3.9201 -1.3299 5.5314 11 6 4.1432 -0.4350 6.5619 12 6 4.4170 -0.8983 7.8337 13 6 4.4797 -2.2646 8.0749 14 8 4.7549 -2.7231 9.3227 15 6 4.6882 -4.0561 9.5134 16 1 4.5058 -4.7131 8.6758 17 6 4.8540 -4.5837 10.7849 18 7 5.0758 -3.7835 11.8052 19 14 4.7610 -6.4306 11.0492 20 1 5.8137 -7.0996 10.2433 21 1 4.9693 -6.7358 12.4875 22 1 3.4257 -6.9244 10.6272 23 6 4.2608 -3.1607 7.0367 24 6 3.9810 -2.6912 5.7685 25 6 2.0400 -0.7212 -1.2492 26 6 3.0741 0.0052 -2.1116 27 6 1.6357 -0.1496 -2.6095 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2953 33 1 1.5639 -1.0760 4.6295 34 1 3.9863 -1.5322 3.4080 35 1 4.1023 0.1431 3.9980 36 1 4.0994 0.6274 6.3727 37 1 4.5868 -0.1989 8.6390 38 1 5.1915 -4.1525 12.6949 39 1 4.3093 -4.2238 7.2210 40 1 3.8103 -3.3875 4.9609 41 1 2.1268 -1.8044 -1.1641 42 1 3.3914 0.9968 -1.7888 43 1 3.8416 -0.6002 -2.5941 44 1 1.4568 -0.8567 -3.4196 45 1 1.0060 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463006418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -83.671600 kcal Electronic energy + Delta-G solvation = -26309.059677 eV Core-core repulsion = 22418.981738 eV Total energy + Delta-G solvation = -3890.077939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81041 -39.16929 -38.68389 -38.11112 -36.98948 -35.83873 -34.47499 -34.24109 -31.79991 -30.92224 -28.56721 -27.57427 -25.87675 -24.51012 -23.62164 -23.09882 -22.18410 -20.96299 -20.27457 -19.85221 -18.95526 -18.55254 -17.70880 -17.15699 -16.61825 -16.44830 -16.36549 -16.07746 -15.65116 -15.51590 -15.26220 -15.17611 -14.87535 -14.47428 -14.33824 -14.13846 -13.89504 -13.77368 -13.46352 -13.33232 -13.08277 -13.04805 -12.90507 -12.63869 -12.53340 -12.40744 -12.35921 -12.32256 -12.16813 -12.09958 -12.01371 -11.49915 -11.18979 -11.03874 -10.86097 -10.79096 -10.30639 -9.78191 -8.97907 -8.47027 -6.15466 -0.69597 0.60062 0.62327 1.35959 1.46245 1.52324 1.87216 2.18071 2.78028 2.85178 2.93919 3.17039 3.28395 3.48729 3.51073 3.73371 3.82966 3.90371 4.07645 4.11436 4.20518 4.22071 4.33355 4.44762 4.50401 4.54188 4.60324 4.61398 4.69656 4.82017 4.84009 4.89021 5.01708 5.06609 5.07713 5.09812 5.15765 5.29471 5.30717 5.32034 5.39498 5.56663 5.71405 5.78187 6.02631 6.09919 6.21468 6.97450 7.78067 8.75795 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.002014 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.584423 B =13897.407450 C =14293.706140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 H 0.080 0.920 4 C -0.601 4.601 5 S 2.611 3.389 6 O -0.990 6.990 7 O -0.997 6.997 8 N -1.116 6.116 9 C 0.169 3.831 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.210 4.210 13 C 0.118 3.882 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.106 0.894 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.245 4.245 24 C -0.045 4.045 25 C -0.144 4.144 26 C -0.186 4.186 27 C -0.181 4.181 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.420 0.580 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 2.898 -29.379 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.074 4.074 3 H 0.098 0.902 4 C -0.734 4.734 5 S 2.709 3.291 6 O -0.981 6.981 7 O -0.987 6.987 8 N -0.875 5.875 9 C 0.044 3.956 10 C -0.178 4.178 11 C -0.073 4.073 12 C -0.229 4.229 13 C 0.067 3.933 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.123 0.877 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.063 4.063 25 C -0.163 4.163 26 C -0.223 4.223 27 C -0.218 4.218 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.172 0.828 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.008 3.934 -28.976 29.853 hybrid contribution 0.147 -1.199 1.050 1.600 sum -5.861 2.735 -27.926 28.666 Atomic orbital electron populations 1.22337 0.94083 1.04270 1.03428 1.20501 0.96147 0.98867 0.91920 0.90179 1.30502 1.14152 1.15078 1.13685 1.04725 0.73064 0.74874 0.76428 1.93554 1.31605 1.87352 1.85555 1.93551 1.75135 1.43364 1.86633 1.55553 1.14656 1.73199 1.44137 1.20202 0.79272 1.02288 0.93843 1.19585 1.09378 0.92991 0.95816 1.20947 0.95489 1.00199 0.90644 1.20440 1.11490 0.92132 0.98885 1.20004 0.93193 0.94329 0.85769 1.83948 1.77820 1.25979 1.26143 1.21813 1.51564 0.79605 0.95936 0.87723 1.26632 0.95880 1.06108 0.93621 1.70184 1.47284 1.37964 1.00457 0.84633 0.79924 0.73540 0.78036 1.17941 1.19923 1.18126 1.21309 1.11230 0.99812 0.94093 1.21055 0.94656 0.95355 0.95267 1.22218 1.04220 0.99699 0.90136 1.23168 0.92924 1.02285 1.03915 1.23065 0.98091 1.03628 0.97000 0.92462 0.90327 0.90504 0.82164 0.82077 0.74499 0.87527 0.89631 0.84210 0.87317 0.91875 0.85989 0.82792 0.86263 0.88755 0.87844 0.87816 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.72 71.98 0.63 -1.79 16 2 C -0.05 -0.63 2.54 -10.80 -0.03 -0.66 16 3 H 0.08 1.00 7.90 -2.39 -0.02 0.98 16 4 C -0.60 -5.78 5.50 71.98 0.40 -5.39 16 5 S 2.61 48.61 5.11 -56.49 -0.29 48.32 16 6 O -0.99 -24.76 15.82 -127.65 -2.02 -26.78 16 7 O -1.00 -25.83 17.50 -127.65 -2.23 -28.07 16 8 N -1.12 -20.31 5.88 -190.80 -1.12 -21.43 16 9 C 0.17 3.05 6.25 85.63 0.54 3.59 16 10 C -0.18 -4.75 5.28 -19.83 -0.10 -4.86 16 11 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 12 C -0.21 -8.79 9.99 22.39 0.22 -8.56 16 13 C 0.12 5.69 6.65 22.58 0.15 5.84 16 14 O -0.23 -13.80 9.76 -22.70 -0.22 -14.02 16 15 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 16 H 0.11 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.40 5.49 84.84 0.47 -0.93 16 18 N -0.92 -56.20 13.67 21.61 0.30 -55.91 16 19 Si 1.02 41.94 29.55 68.60 2.03 43.96 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 C -0.25 -9.85 9.17 22.39 0.21 -9.65 16 24 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 25 C -0.14 -1.33 5.15 -10.80 -0.06 -1.38 16 26 C -0.19 -1.70 10.18 30.59 0.31 -1.38 16 27 C -0.18 -1.59 9.73 30.59 0.30 -1.29 16 28 H 0.06 0.98 5.61 -2.39 -0.01 0.97 16 29 H 0.08 0.85 7.29 -2.39 -0.02 0.84 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.42 7.98 8.60 -96.74 -0.83 7.15 16 34 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 35 H 0.09 1.53 7.64 -2.39 -0.02 1.51 16 36 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.12 4.97 5.64 -2.91 -0.02 4.95 16 40 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.12 0.87 8.11 -2.39 -0.02 0.85 16 42 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 43 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.10 0.83 7.61 -2.39 -0.02 0.82 16 Total: -1.00 -79.80 385.06 0.71 -79.08 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.17 Total: 26.81 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 4.10 Total: -51.97 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -0.83 Total: -77.34 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -4.48 Total: -68.87 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.29 Total: 48.32 kcal Total: -79.80 0.71 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463006418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.589 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds