Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99796 * 2 1 4 4 C 1.53007 * 109.47010 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46669 * 64.99838 * 4 3 2 6 6 C 1.42897 * 113.99893 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47164 * 179.97438 * 7 6 5 9 9 N 1.46492 * 109.47018 * 180.02562 * 8 7 6 10 10 C 1.34784 * 120.00217 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.47865 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.09843 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.03832 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67600 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09002 * 109.46680 * 60.00319 * 1 2 3 28 28 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47260 * 300.00385 * 1 2 3 30 30 H 1.09004 * 109.47210 * 59.99721 * 3 2 1 31 31 H 1.08998 * 109.47146 * 299.99700 * 3 2 1 32 32 H 1.08995 * 109.46958 * 305.00153 * 4 3 2 33 33 H 1.08999 * 109.47036 * 184.99826 * 4 3 2 34 34 H 1.08998 * 109.47452 * 59.99751 * 6 5 4 35 35 H 1.09004 * 109.47329 * 299.99839 * 6 5 4 36 36 H 1.09000 * 109.46773 * 60.00498 * 7 6 5 37 37 H 1.08994 * 109.47379 * 300.00128 * 7 6 5 38 38 H 1.09005 * 109.46655 * 60.00207 * 8 7 6 39 39 H 1.09002 * 109.47164 * 300.00138 * 8 7 6 40 40 H 0.96996 * 120.00373 * 359.97438 * 9 8 7 41 41 H 1.08002 * 119.98607 * 0.02562 * 13 12 10 42 42 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.89897 * 180.29644 * 15 14 13 44 44 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4186 -1.3216 7 6 5.7265 -0.2361 -2.6609 8 6 7.2430 -0.4075 -2.7697 9 7 7.5728 -1.0338 -4.0523 10 6 8.8587 -1.2847 -4.3690 11 8 9.7447 -0.9907 -3.5905 12 6 9.1916 -1.9174 -5.6633 13 6 8.1751 -2.2565 -6.5591 14 6 8.4872 -2.8476 -7.7669 15 6 9.8047 -3.1003 -8.0981 16 6 10.8252 -2.7718 -7.2105 17 16 12.5029 -3.1035 -7.6344 18 6 12.7106 -4.6713 -6.8577 19 1 11.8677 -5.1580 -6.3896 20 6 13.9569 -5.2807 -6.8474 21 7 14.9840 -4.6879 -7.4183 22 14 14.1768 -6.9433 -6.0245 23 1 13.9329 -8.0221 -7.0153 24 1 15.5614 -7.0566 -5.5000 25 1 13.2109 -7.0727 -4.9040 26 6 10.5206 -2.1772 -5.9930 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0902 34 1 5.7354 -0.2136 -0.5070 35 1 5.8638 1.3944 -1.2593 36 1 5.3733 0.3958 -3.4757 37 1 5.2449 -1.2120 -2.7228 38 1 7.5967 -1.0392 -1.9548 39 1 7.7243 0.5686 -2.7081 40 1 6.8658 -1.2688 -4.6734 41 1 7.1442 -2.0561 -6.3068 42 1 7.6992 -3.1091 -8.4574 43 1 10.0430 -3.5587 -9.0465 44 1 15.8555 -5.1139 -7.4108 45 1 11.3107 -1.9174 -5.3040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079506809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -113.751475 kcal Electronic energy + Delta-G solvation = -24901.708406 eV Core-core repulsion = 21010.326106 eV Total energy + Delta-G solvation = -3891.382300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96713 -38.95560 -37.95525 -37.64541 -35.53082 -32.60600 -32.49538 -30.95351 -30.54361 -30.00565 -26.79129 -25.80929 -25.55514 -23.30453 -23.04951 -22.32658 -21.78902 -20.33156 -18.28452 -17.54206 -17.33329 -17.23099 -16.39041 -16.24078 -15.87451 -15.72736 -15.45240 -15.26996 -14.99485 -14.83647 -14.35662 -14.15407 -13.96175 -13.58891 -13.35697 -13.10546 -12.91042 -12.69450 -12.24045 -12.17178 -12.12057 -11.71899 -11.63048 -11.45851 -11.35011 -11.14252 -11.12089 -11.07056 -10.69483 -10.18836 -10.03034 -9.97105 -9.78219 -9.19484 -9.15217 -9.00159 -8.57533 -8.01780 -6.70123 -6.27468 -4.01359 1.17289 1.67791 2.86307 3.05064 3.20935 3.23910 3.27016 3.29213 3.38771 3.49957 4.10067 4.27459 4.47330 4.55287 4.59646 4.64816 4.70740 4.83580 4.87064 4.91175 4.96105 5.01086 5.07168 5.09091 5.13723 5.15286 5.22346 5.23456 5.25343 5.38222 5.48713 5.71196 5.73846 5.79748 5.88525 6.00160 6.26227 6.32608 6.59554 6.61996 6.64725 6.77991 6.94214 7.20076 7.47929 7.58811 8.28424 8.33926 9.18425 10.79255 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.001599 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.452944 B =17507.153544 C =17853.754213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.381 6.381 6 C 0.066 3.934 7 C -0.130 4.130 8 C 0.123 3.877 9 N -0.732 5.732 10 C 0.564 3.436 11 O -0.534 6.534 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.018 4.018 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.123 11.803 11.232 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.300 6.300 6 C -0.011 4.011 7 C -0.168 4.168 8 C -0.001 4.001 9 N -0.386 5.386 10 C 0.353 3.647 11 O -0.411 6.411 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.040 4.040 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.079 0.921 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.478 12.401 11.006 30.398 hybrid contribution -1.219 -1.479 1.176 2.249 sum -26.696 10.922 12.182 31.311 Atomic orbital electron populations 1.22759 0.80963 1.02983 0.99887 1.87971 1.19682 1.27257 1.95375 1.22573 0.92379 0.85578 1.00923 1.22518 0.93347 0.97643 0.87811 1.87921 1.21995 1.82130 1.37970 1.22338 0.81570 0.99678 0.97547 1.21665 0.94987 1.02602 0.97539 1.21145 0.93980 0.98721 0.86212 1.45831 1.08155 1.64196 1.20400 1.18410 0.82040 0.77794 0.86493 1.90775 1.47013 1.52144 1.51204 1.19849 0.95027 1.06211 0.94897 1.21143 0.97540 0.98090 0.94123 1.21060 0.96681 1.01371 0.96968 1.21962 0.91749 0.94742 0.99165 1.22856 1.03008 1.00183 0.95744 1.83595 0.99458 1.26948 1.70016 1.22845 0.98168 1.03147 1.42597 0.90605 1.24998 0.94673 0.98691 0.95175 1.69985 1.00665 1.38277 1.41607 0.86122 0.77746 0.81965 0.79508 1.20164 1.20646 1.19562 1.21951 0.94800 0.91894 0.95363 0.93960 0.89487 0.94166 0.91781 0.92339 0.92285 0.91643 0.92753 0.92876 0.90328 0.90186 0.91179 0.91211 0.76434 0.86474 0.85830 0.85058 0.92061 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.34 10.67 -40.09 -0.43 -3.76 16 3 C 0.06 0.39 6.32 37.16 0.23 0.62 16 4 C 0.06 0.42 6.32 37.16 0.23 0.65 16 5 O -0.38 -3.46 10.31 -40.09 -0.41 -3.88 16 6 C 0.07 0.49 5.94 37.16 0.22 0.71 16 7 C -0.13 -0.99 5.70 -26.73 -0.15 -1.14 16 8 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 9 N -0.73 -8.47 5.51 -61.24 -0.34 -8.80 16 10 C 0.56 9.20 7.77 -12.32 -0.10 9.10 16 11 O -0.53 -10.71 16.34 5.32 0.09 -10.62 16 12 C -0.15 -2.64 5.87 -105.00 -0.62 -3.25 16 13 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 14 C -0.14 -2.03 10.02 -39.67 -0.40 -2.43 16 15 C -0.06 -0.99 9.79 -39.25 -0.38 -1.38 16 16 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 17 S -0.03 -0.90 21.40 -107.50 -2.30 -3.20 16 18 C -0.52 -14.80 9.46 30.92 0.29 -14.50 16 19 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 20 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 21 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 22 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.53 6.50 -40.82 -0.27 3.27 16 41 H 0.12 1.13 6.40 -52.49 -0.34 0.79 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 3.10 7.65 -52.49 -0.40 2.69 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -35.09 400.64 -9.15 -44.24 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.89 Total: 0.27 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.62 Total: -12.04 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.40 Total: -33.63 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.75 Total: -18.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.09 -9.15 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079506809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.510 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds