Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99796 * 2 1 4 4 C 1.53007 * 109.47010 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46669 * 64.99838 * 4 3 2 6 6 C 1.42897 * 113.99893 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47355 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47164 * 179.97438 * 7 6 5 9 9 N 1.46492 * 109.47018 * 180.02562 * 8 7 6 10 10 C 1.34784 * 120.00217 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.47865 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.09843 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.03832 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67600 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.09002 * 109.46680 * 60.00319 * 1 2 3 28 28 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47260 * 300.00385 * 1 2 3 30 30 H 1.09004 * 109.47210 * 59.99721 * 3 2 1 31 31 H 1.08998 * 109.47146 * 299.99700 * 3 2 1 32 32 H 1.08995 * 109.46958 * 305.00153 * 4 3 2 33 33 H 1.08999 * 109.47036 * 184.99826 * 4 3 2 34 34 H 1.08998 * 109.47452 * 59.99751 * 6 5 4 35 35 H 1.09004 * 109.47329 * 299.99839 * 6 5 4 36 36 H 1.09000 * 109.46773 * 60.00498 * 7 6 5 37 37 H 1.08994 * 109.47379 * 300.00128 * 7 6 5 38 38 H 1.09005 * 109.46655 * 60.00207 * 8 7 6 39 39 H 1.09002 * 109.47164 * 300.00138 * 8 7 6 40 40 H 0.96996 * 120.00373 * 359.97438 * 9 8 7 41 41 H 1.08002 * 119.98607 * 0.02562 * 13 12 10 42 42 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.89897 * 180.29644 * 15 14 13 44 44 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4186 -1.3216 7 6 5.7265 -0.2361 -2.6609 8 6 7.2430 -0.4075 -2.7697 9 7 7.5728 -1.0338 -4.0523 10 6 8.8587 -1.2847 -4.3690 11 8 9.7447 -0.9907 -3.5905 12 6 9.1916 -1.9174 -5.6633 13 6 8.1751 -2.2565 -6.5591 14 6 8.4872 -2.8476 -7.7669 15 6 9.8047 -3.1003 -8.0981 16 6 10.8252 -2.7718 -7.2105 17 16 12.5029 -3.1035 -7.6344 18 6 12.7106 -4.6713 -6.8577 19 1 11.8677 -5.1580 -6.3896 20 6 13.9569 -5.2807 -6.8474 21 7 14.9840 -4.6879 -7.4183 22 14 14.1768 -6.9433 -6.0245 23 1 13.9329 -8.0221 -7.0153 24 1 15.5614 -7.0566 -5.5000 25 1 13.2109 -7.0727 -4.9040 26 6 10.5206 -2.1772 -5.9930 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1765 0.0902 34 1 5.7354 -0.2136 -0.5070 35 1 5.8638 1.3944 -1.2593 36 1 5.3733 0.3958 -3.4757 37 1 5.2449 -1.2120 -2.7228 38 1 7.5967 -1.0392 -1.9548 39 1 7.7243 0.5686 -2.7081 40 1 6.8658 -1.2688 -4.6734 41 1 7.1442 -2.0561 -6.3068 42 1 7.6992 -3.1091 -8.4574 43 1 10.0430 -3.5587 -9.0465 44 1 15.8555 -5.1139 -7.4108 45 1 11.3107 -1.9174 -5.3040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079506809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -138.252447 kcal Electronic energy + Delta-G solvation = -24902.770848 eV Core-core repulsion = 21010.326106 eV Total energy + Delta-G solvation = -3892.444742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23580 -39.51745 -39.17951 -38.27574 -36.53711 -34.65802 -33.53067 -32.06880 -31.83979 -30.72447 -27.74933 -27.25512 -26.63591 -24.50156 -23.58986 -23.52317 -22.61725 -21.59603 -19.98150 -18.97872 -18.03651 -17.81069 -17.35967 -17.02736 -16.93816 -16.86188 -16.57768 -16.33142 -16.19354 -16.10690 -15.63084 -15.19627 -15.01455 -14.73620 -14.61065 -14.41030 -13.87539 -13.58003 -13.26529 -13.24290 -13.06035 -12.96876 -12.81401 -12.66965 -12.57972 -12.39021 -12.24264 -12.03851 -11.89103 -11.75044 -11.26660 -11.14862 -10.75884 -10.64980 -10.56605 -10.29730 -9.89940 -9.69689 -8.80717 -8.39605 -6.19658 -0.18494 0.25742 1.29176 1.37036 1.45580 1.64374 1.78545 1.96923 2.24100 2.72819 2.80358 2.87540 2.93388 3.41492 3.64630 3.93253 3.95329 3.98127 4.03669 4.05754 4.18797 4.25017 4.36335 4.43746 4.47524 4.47788 4.50244 4.54015 4.58794 4.60068 4.66521 4.70169 4.78347 4.87455 4.92638 5.09025 5.09568 5.22182 5.31683 5.34385 5.38213 5.50861 5.86676 6.15318 6.16359 6.29561 6.44467 7.00722 7.11526 8.67473 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.001599 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.452944 B =17507.153544 C =17853.754213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.057 3.943 5 O -0.403 6.403 6 C 0.063 3.937 7 C -0.117 4.117 8 C 0.123 3.877 9 N -0.707 5.707 10 C 0.562 3.438 11 O -0.583 6.583 12 C -0.158 4.158 13 C -0.062 4.062 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.131 4.131 17 S -0.094 6.094 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.021 3.979 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.045 4.045 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.418 0.582 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.184 11.583 11.498 35.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.018 4.018 4 C -0.019 4.019 5 O -0.322 6.322 6 C -0.014 4.014 7 C -0.155 4.155 8 C -0.001 4.001 9 N -0.361 5.361 10 C 0.350 3.650 11 O -0.464 6.464 12 C -0.163 4.163 13 C -0.081 4.081 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.242 4.242 17 S 0.140 5.860 18 C -0.685 4.685 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.067 4.067 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.256 0.744 41 H 0.192 0.808 42 H 0.194 0.806 43 H 0.153 0.847 44 H 0.083 0.917 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -29.602 12.195 11.256 33.937 hybrid contribution -0.167 -1.294 1.119 1.719 sum -29.770 10.902 12.375 34.033 Atomic orbital electron populations 1.22900 0.79647 1.03610 1.00881 1.87918 1.21343 1.28798 1.95614 1.22734 0.92068 0.84966 1.02058 1.22724 0.93821 0.98544 0.86861 1.87877 1.22570 1.82626 1.39174 1.22376 0.81267 1.00352 0.97399 1.21526 0.92780 1.03013 0.98133 1.21238 0.95709 0.98195 0.84921 1.45643 1.06769 1.62479 1.21162 1.18381 0.83073 0.77642 0.85878 1.90758 1.48788 1.54324 1.52482 1.19960 0.94150 1.06131 0.96091 1.21733 0.99179 0.94730 0.92448 1.21563 0.95823 0.98975 0.97644 1.22083 0.92759 0.94847 0.98656 1.22509 1.00569 1.03497 0.97602 1.83464 1.05181 1.26830 1.70507 1.23075 0.98382 1.04254 1.42798 0.91491 1.25999 0.94152 1.02729 0.95601 1.70106 1.01199 1.40105 1.42761 0.85050 0.77919 0.77128 0.78544 1.18606 1.19670 1.19414 1.21628 0.96082 0.94085 0.94893 0.93384 0.89157 0.92721 0.89543 0.92211 0.92532 0.89540 0.92732 0.91753 0.89285 0.89943 0.92014 0.91429 0.74369 0.80782 0.80633 0.84674 0.91680 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.72 10.67 -144.33 -1.54 -8.26 16 3 C 0.06 0.62 6.32 71.98 0.45 1.07 16 4 C 0.06 0.65 6.32 71.98 0.45 1.10 16 5 O -0.40 -6.55 10.31 -144.33 -1.49 -8.04 16 6 C 0.06 0.81 5.94 71.98 0.43 1.24 16 7 C -0.12 -1.44 5.70 30.60 0.17 -1.27 16 8 C 0.12 2.17 5.67 86.38 0.49 2.66 16 9 N -0.71 -14.34 5.51 -465.94 -2.57 -16.91 16 10 C 0.56 17.81 7.77 86.79 0.67 18.49 16 11 O -0.58 -24.03 16.34 -3.88 -0.06 -24.10 16 12 C -0.16 -5.20 5.87 -20.11 -0.12 -5.32 16 13 C -0.06 -1.43 9.54 22.57 0.22 -1.21 16 14 C -0.12 -2.92 10.02 22.21 0.22 -2.70 16 15 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 16 C -0.13 -5.84 5.45 22.65 0.12 -5.71 16 17 S -0.09 -5.23 21.40 -56.49 -1.21 -6.44 16 18 C -0.54 -32.00 9.46 67.94 0.64 -31.35 16 19 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 20 C 0.02 1.19 5.49 84.84 0.47 1.65 16 21 N -0.91 -55.07 13.22 21.64 0.29 -54.79 16 22 Si 0.99 45.12 29.55 68.60 2.03 47.15 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 C -0.04 -1.94 9.34 22.70 0.21 -1.73 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.42 5.33 6.50 -92.71 -0.60 4.73 16 41 H 0.17 2.04 6.40 -2.91 -0.02 2.02 16 42 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 43 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.10 5.03 7.65 -2.91 -0.02 5.01 16 Total: -1.00 -82.99 400.64 1.74 -81.25 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.38 Total: 13.68 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.91 Total: -23.55 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -2.28 Total: -71.70 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -3.09 Total: -40.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.21 Total: -6.44 kcal Total: -82.99 1.74 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079506809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.001 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds