Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99565 * 2 1 4 4 O 1.20824 * 120.00246 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99817 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47263 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00218 * 269.99800 * 6 5 3 8 8 H 1.07996 * 119.99997 * 140.64549 * 7 6 5 9 9 C 1.38952 * 120.00079 * 320.65831 * 7 6 5 10 10 N 1.31409 * 120.00217 * 158.99713 * 9 7 6 11 11 Si 1.86800 * 119.99711 * 338.98786 * 9 7 6 12 12 H 1.48504 * 109.46745 * 95.81690 * 11 9 7 13 13 H 1.48503 * 109.47273 * 215.81587 * 11 9 7 14 14 H 1.48498 * 109.47175 * 335.81660 * 11 9 7 15 15 C 1.34773 * 119.99925 * 90.00194 * 6 5 3 16 16 O 1.21296 * 120.00016 * 4.99662 * 15 6 5 17 17 C 1.50700 * 120.00335 * 185.00434 * 15 6 5 18 18 C 1.52996 * 109.47423 * 185.45672 * 17 15 6 19 19 C 1.52998 * 109.46971 * 179.12215 * 18 17 15 20 20 O 1.42901 * 109.47327 * 180.02562 * 19 18 17 21 21 C 1.35889 * 117.00227 * 180.02562 * 20 19 18 22 22 C 1.38766 * 120.04816 * 359.72106 * 21 20 19 23 23 C 1.38133 * 120.00083 * 179.74982 * 22 21 20 24 24 C 1.38250 * 120.07494 * 0.52412 * 23 22 21 25 25 C 1.38478 * 120.08702 * 359.75054 * 24 23 22 26 26 F 1.35104 * 119.99327 * 179.97438 * 25 24 23 27 27 C 1.38386 * 120.00340 * 359.97438 * 25 24 23 28 28 H 1.09004 * 109.47007 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47156 * 300.00343 * 1 2 3 30 30 H 1.08997 * 109.47118 * 60.00641 * 1 2 3 31 31 H 1.09004 * 109.47086 * 59.99656 * 5 3 2 32 32 H 1.08994 * 109.46981 * 300.00187 * 5 3 2 33 33 H 0.96997 * 120.00069 * 179.97438 * 10 9 7 34 34 H 1.09008 * 109.47069 * 65.45728 * 17 15 6 35 35 H 1.08996 * 109.46782 * 305.46600 * 17 15 6 36 36 H 1.09004 * 109.46707 * 59.12414 * 18 17 15 37 37 H 1.08993 * 109.47084 * 299.12417 * 18 17 15 38 38 H 1.08994 * 109.47229 * 60.00433 * 19 18 17 39 39 H 1.09005 * 109.47044 * 299.99952 * 19 18 17 40 40 H 1.08010 * 119.99965 * 0.02562 * 22 21 20 41 41 H 1.08003 * 119.96222 * 180.27548 * 23 22 21 42 42 H 1.08004 * 119.95366 * 179.76619 * 24 23 22 43 43 H 1.07996 * 120.03448 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1756 3.3370 -1.1885 8 1 3.8609 4.3646 -1.2947 9 6 4.7768 2.6807 -2.2556 10 7 4.6032 3.1227 -3.4809 11 14 5.8319 1.1702 -1.9483 12 1 5.0124 -0.0533 -2.1397 13 1 6.9695 1.1584 -2.9028 14 1 6.3527 1.2047 -0.5580 15 6 4.1731 3.3264 1.1659 16 8 4.0903 2.7224 2.2145 17 6 4.4900 4.7997 1.1680 18 6 4.7925 5.2543 2.5972 19 6 5.1356 6.7453 2.5962 20 8 5.4187 7.1699 3.9310 21 6 5.7436 8.4776 4.1066 22 6 5.7945 9.3335 3.0156 23 6 6.1198 10.6638 3.1959 24 6 6.4054 11.1418 4.4613 25 6 6.3612 10.2894 5.5518 26 9 6.6412 10.7584 6.7875 27 6 6.0301 8.9573 5.3758 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 5.0232 2.6648 -4.2257 34 1 3.6351 5.3558 0.7831 35 1 5.3584 4.9854 0.5360 36 1 5.6377 4.6872 2.9876 37 1 3.9186 5.0829 3.2256 38 1 4.2905 7.3123 2.2059 39 1 6.0096 6.9166 1.9677 40 1 5.5755 8.9605 2.0259 41 1 6.1549 11.3304 2.3469 42 1 6.6632 12.1815 4.5996 43 1 5.9951 8.2922 6.2259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120651022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -185.042547 kcal Electronic energy + Delta-G solvation = -28463.957310 eV Core-core repulsion = 24003.270421 eV Total energy + Delta-G solvation = -4460.686889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.97321 -41.74073 -41.12664 -40.47181 -38.37227 -37.63300 -36.76585 -34.80152 -34.02232 -31.89987 -30.99453 -30.55672 -28.54864 -27.60982 -26.59202 -24.18528 -23.66466 -22.64796 -22.06580 -20.95706 -19.67121 -19.11651 -18.82348 -18.35188 -17.59819 -17.46879 -17.38602 -17.17873 -17.07540 -17.03754 -16.86902 -16.63068 -16.03919 -15.82167 -15.25249 -14.88231 -14.74106 -14.70491 -14.53865 -14.16991 -14.06637 -13.69683 -13.50378 -13.16954 -13.09577 -12.99358 -12.98060 -12.82203 -12.47568 -12.32723 -12.19438 -11.95066 -11.84519 -11.83581 -11.71448 -11.54924 -11.19343 -10.63338 -9.92036 -9.90875 -9.31889 -8.53673 -6.20910 0.10358 0.28326 1.10291 1.19546 1.32437 1.42187 1.47461 1.88734 2.01955 2.15821 2.57524 2.58486 2.94505 3.33810 3.72050 3.83417 3.90691 3.93809 3.96764 3.99572 4.06339 4.12756 4.17469 4.24245 4.28782 4.29512 4.41672 4.49197 4.51431 4.56530 4.63284 4.82944 5.00006 5.08528 5.12134 5.19371 5.22680 5.27158 5.32734 5.35162 5.72974 6.03500 6.13488 6.34135 6.69660 6.87981 7.26258 7.62379 8.59815 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.002257 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.482511 B =12405.560296 C =13369.594787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.099 3.901 6 N -0.462 5.462 7 C -0.344 4.344 8 H 0.087 0.913 9 C 0.031 3.969 10 N -0.889 5.889 11 Si 0.910 3.090 12 H -0.253 1.253 13 H -0.276 1.276 14 H -0.254 1.254 15 C 0.489 3.511 16 O -0.610 6.610 17 C -0.108 4.108 18 C -0.092 4.092 19 C 0.065 3.935 20 O -0.328 6.328 21 C 0.145 3.855 22 C -0.222 4.222 23 C -0.044 4.044 24 C -0.192 4.192 25 C 0.122 3.878 26 F -0.142 7.142 27 C -0.210 4.210 28 H 0.141 0.859 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 7.794 8.372 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.026 4.026 6 N -0.184 5.184 7 C -0.471 4.471 8 H 0.105 0.895 9 C -0.174 4.174 10 N -0.525 5.525 11 Si 0.734 3.266 12 H -0.179 1.179 13 H -0.202 1.202 14 H -0.177 1.177 15 C 0.281 3.719 16 O -0.496 6.496 17 C -0.147 4.147 18 C -0.130 4.130 19 C -0.010 4.010 20 O -0.242 6.242 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.062 4.062 24 C -0.211 4.211 25 C 0.103 3.897 26 F -0.121 7.121 27 C -0.229 4.229 28 H 0.159 0.841 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.170 0.830 41 H 0.186 0.814 42 H 0.176 0.824 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.483 7.626 8.846 11.774 hybrid contribution 0.014 -0.627 -0.232 0.669 sum 1.498 6.999 8.614 11.200 Atomic orbital electron populations 1.23565 0.74834 1.05905 1.02233 1.86493 1.25197 1.32444 1.84075 1.24664 0.92902 0.81638 0.71534 1.90590 1.67282 1.37483 1.45725 1.21441 0.87380 0.88098 1.05720 1.43478 1.59374 1.09008 1.06511 1.18927 1.40589 0.99401 0.88186 0.89515 1.25902 0.96657 1.00650 0.94240 1.69824 1.40740 1.42770 0.99184 0.86357 0.80103 0.80302 0.79882 1.17870 1.20211 1.17719 1.21106 0.77288 0.91224 0.82270 1.90546 1.56751 1.69967 1.32310 1.21218 1.04781 0.91031 0.97719 1.21112 1.02629 0.93498 0.95797 1.22929 1.02066 0.95059 0.80927 1.86034 1.83010 1.23026 1.32137 1.18850 0.93915 0.83549 0.93778 1.21701 1.08057 0.95257 0.99064 1.21202 0.93150 0.94537 0.97336 1.21364 1.06720 1.01410 0.91629 1.17473 1.00084 0.91936 0.80255 1.91491 1.91149 1.88756 1.40708 1.20364 1.09966 0.95369 0.97209 0.84133 0.92225 0.92437 0.87486 0.85536 0.90791 0.88574 0.87317 0.91377 0.91942 0.90046 0.89664 0.83041 0.81364 0.82397 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -12.84 10.57 -51.44 -0.54 -13.38 16 3 C 0.45 19.26 8.02 71.24 0.57 19.83 16 4 O -0.52 -25.30 16.18 21.97 0.36 -24.94 16 5 C 0.10 4.21 4.84 85.63 0.41 4.62 16 6 N -0.46 -21.44 1.63 -639.61 -1.04 -22.48 16 7 C -0.34 -17.09 8.93 84.04 0.75 -16.34 16 8 H 0.09 4.57 7.45 -2.91 -0.02 4.55 16 9 C 0.03 1.53 5.32 84.93 0.45 1.98 16 10 N -0.89 -46.87 13.96 21.66 0.30 -46.57 16 11 Si 0.91 37.58 25.02 68.60 1.72 39.30 16 12 H -0.25 -9.73 6.71 99.48 0.67 -9.06 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 15 C 0.49 21.62 7.62 87.66 0.67 22.28 16 16 O -0.61 -29.02 15.55 -3.08 -0.05 -29.07 16 17 C -0.11 -3.77 4.35 29.85 0.13 -3.64 16 18 C -0.09 -2.82 4.88 30.59 0.15 -2.67 16 19 C 0.06 1.55 4.74 71.98 0.34 1.89 16 20 O -0.33 -8.84 10.13 -92.31 -0.94 -9.77 16 21 C 0.15 3.44 6.68 22.50 0.15 3.59 16 22 C -0.22 -4.15 9.04 22.37 0.20 -3.95 16 23 C -0.04 -0.66 10.04 22.25 0.22 -0.43 16 24 C -0.19 -3.13 10.02 22.33 0.22 -2.91 16 25 C 0.12 2.56 7.30 22.36 0.16 2.73 16 26 F -0.14 -3.14 17.27 44.97 0.78 -2.36 16 27 C -0.21 -4.89 9.97 22.41 0.22 -4.67 16 28 H 0.14 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.11 4.45 3.42 -2.38 -0.01 4.45 16 32 H 0.13 5.00 7.36 -2.39 -0.02 4.98 16 33 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.10 3.25 8.04 -2.38 -0.02 3.23 16 35 H 0.11 3.56 7.86 -2.39 -0.02 3.54 16 36 H 0.07 2.20 8.13 -2.38 -0.02 2.18 16 37 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 38 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 39 H 0.09 1.74 7.65 -2.38 -0.02 1.72 16 40 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 41 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -66.29 372.36 7.44 -58.85 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 1.00 Total: 26.20 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 5.86 Total: 24.24 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.74 Total: -69.05 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -1.17 Total: -77.17 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 1.72 Total: 39.30 kcal Total: -66.29 7.44 -58.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120651022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.191 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds