Wall clock time and date at job start Sat Apr 11 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 S 1.81398 * 109.47025 * 119.99796 * 2 1 3 5 5 O 1.42098 * 110.54396 * 312.58735 * 4 2 1 6 6 O 1.42094 * 110.54315 * 175.83215 * 4 2 1 7 7 C 1.76208 * 104.45112 * 64.21046 * 4 2 1 8 8 C 1.37975 * 120.07473 * 243.34965 * 7 4 2 9 9 C 1.38339 * 120.14563 * 179.97438 * 8 7 4 10 10 C 1.38385 * 120.29016 * 0.02562 * 9 8 7 11 11 C 1.37939 * 120.14341 * 359.72595 * 10 9 8 12 12 C 1.39554 * 120.07005 * 63.32054 * 7 4 2 13 13 C 1.47849 * 120.14640 * 0.02943 * 12 7 4 14 14 O 1.21547 * 120.00238 * 58.88315 * 13 12 7 15 15 N 1.34777 * 119.99542 * 238.88450 * 13 12 7 16 16 C 1.46495 * 120.00571 * 5.53056 * 15 13 12 17 17 C 1.46501 * 119.99561 * 185.53234 * 15 13 12 18 18 H 1.08997 * 109.47199 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47244 * 239.99731 * 17 15 13 20 20 C 1.50699 * 109.46930 * 119.99823 * 17 15 13 21 21 H 1.07997 * 120.00174 * 34.89237 * 20 17 15 22 22 C 1.37887 * 120.00041 * 214.89089 * 20 17 15 23 23 N 1.31514 * 119.99939 * 184.80901 * 22 20 17 24 24 Si 1.86796 * 119.99913 * 4.81178 * 22 20 17 25 25 H 1.48504 * 109.47352 * 94.77333 * 24 22 20 26 26 H 1.48500 * 109.47304 * 214.77269 * 24 22 20 27 27 H 1.48504 * 109.47072 * 334.77271 * 24 22 20 28 28 H 1.08999 * 109.47039 * 64.96705 * 1 2 3 29 29 H 1.09006 * 109.46896 * 184.96384 * 1 2 3 30 30 H 1.08994 * 109.47321 * 304.96498 * 1 2 3 31 31 H 1.08998 * 109.46983 * 239.99966 * 2 1 3 32 32 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46841 * 300.00260 * 3 2 1 34 34 H 1.09002 * 109.46859 * 59.99485 * 3 2 1 35 35 H 1.08003 * 119.92890 * 359.97149 * 8 7 4 36 36 H 1.07998 * 119.85395 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.92452 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.07067 * 180.29736 * 11 10 9 39 39 H 1.09005 * 109.47228 * 94.85385 * 16 15 13 40 40 H 1.08998 * 109.47429 * 214.86064 * 16 15 13 41 41 H 1.09003 * 109.46958 * 334.85764 * 16 15 13 42 42 H 1.08997 * 109.46969 * 174.98639 * 19 17 15 43 43 H 1.08994 * 109.47089 * 294.99022 * 19 17 15 44 44 H 1.09002 * 109.46919 * 54.98798 * 19 17 15 45 45 H 0.96998 * 119.99528 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.4519 -0.3918 2.6380 6 8 3.5520 -0.9527 1.4569 7 6 1.5813 -2.5166 1.2864 8 6 0.6860 -3.0572 2.1863 9 6 0.2501 -4.3614 2.0344 10 6 0.7088 -5.1323 0.9807 11 6 1.6001 -4.6023 0.0711 12 6 2.0473 -3.2885 0.2212 13 6 3.0068 -2.7157 -0.7469 14 8 4.0818 -2.2983 -0.3627 15 7 2.6894 -2.6564 -2.0555 16 6 1.3500 -3.0462 -2.5028 17 6 3.6840 -2.2021 -3.0305 18 1 4.6127 -1.9573 -2.5150 19 6 3.1595 -0.9596 -3.7530 20 6 3.9396 -3.2965 -4.0344 21 1 3.1333 -3.9454 -4.3429 22 6 5.2029 -3.4695 -4.5591 23 7 5.4060 -4.3614 -5.5041 24 14 6.6259 -2.4371 -3.9278 25 1 7.3456 -3.1835 -2.8646 26 1 7.5590 -2.1442 -5.0452 27 1 6.1043 -1.1628 -3.3715 28 1 -0.3633 0.4348 -0.9311 29 1 -0.3633 -1.0239 0.0889 30 1 -0.3634 0.5889 0.8421 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.3246 -2.4609 3.0111 36 1 -0.4504 -4.7799 2.7418 37 1 0.3649 -6.1500 0.8680 38 1 1.9535 -5.2035 -0.7535 39 1 0.7187 -2.1604 -2.5743 40 1 1.4180 -3.5238 -3.4802 41 1 0.9166 -3.7444 -1.7867 42 1 3.9337 -0.5696 -4.4136 43 1 2.2804 -1.2249 -4.3402 44 1 2.8906 -0.1993 -3.0196 45 1 6.2948 -4.4833 -5.8729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548530899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:52 Heat of formation + Delta-G solvation = -63.564010 kcal Electronic energy + Delta-G solvation = -29681.639734 eV Core-core repulsion = 25792.433726 eV Total energy + Delta-G solvation = -3889.206008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.22090 -38.31440 -36.91342 -35.76196 -35.52600 -35.10898 -32.91456 -31.63385 -31.47544 -29.92036 -27.53575 -26.40223 -25.38897 -24.11838 -23.50943 -22.29285 -21.22499 -19.21571 -18.60093 -17.70529 -17.36747 -16.62715 -16.44271 -16.16307 -15.72295 -15.10229 -14.95853 -14.82570 -14.38247 -14.16575 -13.89367 -13.43457 -13.34261 -13.17703 -13.06658 -12.64088 -12.54700 -12.44718 -12.41365 -12.34678 -11.90639 -11.86293 -11.75873 -11.67825 -11.61594 -11.50380 -11.39036 -11.12581 -10.81012 -10.71385 -10.55063 -10.23553 -9.79796 -9.48709 -9.41598 -9.26906 -8.96983 -8.67575 -7.82012 -6.25277 -4.28370 0.09937 0.65317 1.02682 2.86123 2.95323 3.25650 3.34189 3.35867 3.43485 3.56802 3.82762 4.19060 4.32189 4.42882 4.53962 4.68049 4.79121 4.81856 4.96568 5.07901 5.15982 5.24391 5.32108 5.39638 5.46498 5.46951 5.57188 5.67677 5.71335 5.78896 5.85539 5.88621 5.92050 6.03963 6.15241 6.18711 6.23907 6.29279 6.47163 6.62994 6.82298 6.96182 7.32962 7.50994 7.92572 8.35337 8.64578 8.76047 9.36743 10.85986 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005159 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.201301 B = 5425.990536 C = 6250.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.576 4.576 3 C -0.140 4.140 4 S 2.477 3.523 5 O -0.946 6.946 6 O -0.892 6.892 7 C -0.625 4.625 8 C -0.029 4.029 9 C -0.132 4.132 10 C -0.071 4.071 11 C -0.109 4.109 12 C -0.015 4.015 13 C 0.500 3.500 14 O -0.489 6.489 15 N -0.578 5.578 16 C 0.067 3.933 17 C 0.217 3.783 18 H 0.071 0.929 19 C -0.147 4.147 20 C -0.527 4.527 21 H 0.080 0.920 22 C 0.082 3.918 23 N -0.888 5.888 24 Si 0.869 3.131 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.257 1.257 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 4.753 11.169 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.686 4.686 3 C -0.199 4.199 4 S 2.656 3.344 5 O -0.943 6.943 6 O -0.889 6.889 7 C -0.712 4.712 8 C -0.048 4.048 9 C -0.151 4.151 10 C -0.089 4.089 11 C -0.128 4.128 12 C -0.019 4.019 13 C 0.284 3.716 14 O -0.364 6.364 15 N -0.310 5.310 16 C -0.077 4.077 17 C 0.118 3.882 18 H 0.089 0.911 19 C -0.206 4.206 20 C -0.565 4.565 21 H 0.098 0.902 22 C -0.123 4.123 23 N -0.524 5.524 24 Si 0.695 3.305 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.182 1.182 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.637 5.211 11.884 18.825 hybrid contribution 0.305 -0.421 -0.575 0.775 sum -13.332 4.791 11.309 18.127 Atomic orbital electron populations 1.21616 0.89724 1.03470 1.04653 1.30096 1.07185 1.09907 1.21445 1.21620 1.02518 0.91281 1.04439 1.06289 0.76046 0.75023 0.77055 1.93506 1.76365 1.80244 1.44213 1.93759 1.24987 1.84437 1.85705 1.30621 1.11565 1.24853 1.04153 1.20919 0.92014 0.95669 0.96186 1.21384 1.00834 0.94222 0.98618 1.21421 0.94638 0.99750 0.93064 1.21475 0.96949 0.94357 1.00000 1.19924 0.93603 0.95141 0.93267 1.18714 0.87767 0.81792 0.83370 1.91021 1.22124 1.45487 1.77718 1.48439 1.14068 1.63107 1.05409 1.21913 0.83644 0.99715 1.02420 1.19526 0.88448 0.93230 0.87046 0.91078 1.22229 1.01392 0.97450 0.99541 1.21070 0.96816 1.15825 1.22754 0.90231 1.24947 0.98484 0.94656 0.94188 1.69882 1.22850 1.33790 1.25923 0.86952 0.82658 0.82054 0.78809 1.19732 1.21102 1.18152 0.90124 0.91401 0.90558 0.84019 0.90518 0.89590 0.91138 0.83549 0.84853 0.84712 0.83974 0.93439 0.89547 0.91696 0.92386 0.93007 0.95473 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.02 37.16 0.34 -1.00 16 2 C -0.58 -7.50 3.22 -26.73 -0.09 -7.59 16 3 C -0.14 -1.60 9.20 37.16 0.34 -1.25 16 4 S 2.48 39.85 4.12 -107.50 -0.44 39.41 16 5 O -0.95 -15.17 16.57 -57.54 -0.95 -16.13 16 6 O -0.89 -18.50 14.77 -67.04 -0.99 -19.49 16 7 C -0.63 -9.51 4.92 -39.19 -0.19 -9.70 16 8 C -0.03 -0.36 9.49 -39.64 -0.38 -0.73 16 9 C -0.13 -1.32 10.04 -39.49 -0.40 -1.72 16 10 C -0.07 -0.74 10.03 -39.64 -0.40 -1.14 16 11 C -0.11 -1.49 7.58 -39.19 -0.30 -1.79 16 12 C -0.02 -0.25 4.77 -104.97 -0.50 -0.75 16 13 C 0.50 10.16 4.72 -12.33 -0.06 10.11 16 14 O -0.49 -11.99 13.35 -18.57 -0.25 -12.24 16 15 N -0.58 -11.33 2.38 -176.38 -0.42 -11.75 16 16 C 0.07 1.02 9.51 59.84 0.57 1.58 16 17 C 0.22 4.98 2.27 -69.08 -0.16 4.82 16 18 H 0.07 1.82 3.84 -51.93 -0.20 1.62 16 19 C -0.15 -2.90 9.10 37.16 0.34 -2.56 16 20 C -0.53 -13.76 8.75 -34.44 -0.30 -14.06 16 21 H 0.08 2.17 6.77 -52.49 -0.36 1.82 16 22 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 23 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 24 Si 0.87 21.68 27.31 -169.99 -4.64 17.04 16 25 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.26 -6.21 6.37 56.52 0.36 -5.85 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.14 2.05 6.03 -51.93 -0.31 1.73 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.15 1.56 7.21 -52.48 -0.38 1.18 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.14 1.92 7.83 -52.49 -0.41 1.51 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.41 6.54 -51.93 -0.34 1.07 16 41 H 0.06 0.84 4.72 -51.93 -0.25 0.60 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 44 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -35.28 368.87 -9.08 -44.36 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.44 Total: 1.95 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.28 Total: -23.62 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.35 Total: -36.84 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.19 Total: -47.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.64 Total: 17.04 kcal Atomic # 16 Polarization: 39.85 SS G_CDS: -0.44 Total: 39.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.28 -9.08 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.205 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds