Wall clock time and date at job start Sat Apr 11 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 S 1.81398 * 109.47025 * 119.99796 * 2 1 3 5 5 O 1.42098 * 110.54396 * 312.58735 * 4 2 1 6 6 O 1.42094 * 110.54315 * 175.83215 * 4 2 1 7 7 C 1.76208 * 104.45112 * 64.21046 * 4 2 1 8 8 C 1.37975 * 120.07473 * 243.34965 * 7 4 2 9 9 C 1.38339 * 120.14563 * 179.97438 * 8 7 4 10 10 C 1.38385 * 120.29016 * 0.02562 * 9 8 7 11 11 C 1.37939 * 120.14341 * 359.72595 * 10 9 8 12 12 C 1.39554 * 120.07005 * 63.32054 * 7 4 2 13 13 C 1.47849 * 120.14640 * 0.02943 * 12 7 4 14 14 O 1.21547 * 120.00238 * 58.88315 * 13 12 7 15 15 N 1.34777 * 119.99542 * 238.88450 * 13 12 7 16 16 C 1.46495 * 120.00571 * 5.53056 * 15 13 12 17 17 C 1.46501 * 119.99561 * 185.53234 * 15 13 12 18 18 H 1.08997 * 109.47199 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47244 * 239.99731 * 17 15 13 20 20 C 1.50699 * 109.46930 * 119.99823 * 17 15 13 21 21 H 1.07997 * 120.00174 * 34.89237 * 20 17 15 22 22 C 1.37887 * 120.00041 * 214.89089 * 20 17 15 23 23 N 1.31514 * 119.99939 * 184.80901 * 22 20 17 24 24 Si 1.86796 * 119.99913 * 4.81178 * 22 20 17 25 25 H 1.48504 * 109.47352 * 94.77333 * 24 22 20 26 26 H 1.48500 * 109.47304 * 214.77269 * 24 22 20 27 27 H 1.48504 * 109.47072 * 334.77271 * 24 22 20 28 28 H 1.08999 * 109.47039 * 64.96705 * 1 2 3 29 29 H 1.09006 * 109.46896 * 184.96384 * 1 2 3 30 30 H 1.08994 * 109.47321 * 304.96498 * 1 2 3 31 31 H 1.08998 * 109.46983 * 239.99966 * 2 1 3 32 32 H 1.08998 * 109.47401 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46841 * 300.00260 * 3 2 1 34 34 H 1.09002 * 109.46859 * 59.99485 * 3 2 1 35 35 H 1.08003 * 119.92890 * 359.97149 * 8 7 4 36 36 H 1.07998 * 119.85395 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.92452 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.07067 * 180.29736 * 11 10 9 39 39 H 1.09005 * 109.47228 * 94.85385 * 16 15 13 40 40 H 1.08998 * 109.47429 * 214.86064 * 16 15 13 41 41 H 1.09003 * 109.46958 * 334.85764 * 16 15 13 42 42 H 1.08997 * 109.46969 * 174.98639 * 19 17 15 43 43 H 1.08994 * 109.47089 * 294.99022 * 19 17 15 44 44 H 1.09002 * 109.46919 * 54.98798 * 19 17 15 45 45 H 0.96998 * 119.99528 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.4519 -0.3918 2.6380 6 8 3.5520 -0.9527 1.4569 7 6 1.5813 -2.5166 1.2864 8 6 0.6860 -3.0572 2.1863 9 6 0.2501 -4.3614 2.0344 10 6 0.7088 -5.1323 0.9807 11 6 1.6001 -4.6023 0.0711 12 6 2.0473 -3.2885 0.2212 13 6 3.0068 -2.7157 -0.7469 14 8 4.0818 -2.2983 -0.3627 15 7 2.6894 -2.6564 -2.0555 16 6 1.3500 -3.0462 -2.5028 17 6 3.6840 -2.2021 -3.0305 18 1 4.6127 -1.9573 -2.5150 19 6 3.1595 -0.9596 -3.7530 20 6 3.9396 -3.2965 -4.0344 21 1 3.1333 -3.9454 -4.3429 22 6 5.2029 -3.4695 -4.5591 23 7 5.4060 -4.3614 -5.5041 24 14 6.6259 -2.4371 -3.9278 25 1 7.3456 -3.1835 -2.8646 26 1 7.5590 -2.1442 -5.0452 27 1 6.1043 -1.1628 -3.3715 28 1 -0.3633 0.4348 -0.9311 29 1 -0.3633 -1.0239 0.0889 30 1 -0.3634 0.5889 0.8421 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.3246 -2.4609 3.0111 36 1 -0.4504 -4.7799 2.7418 37 1 0.3649 -6.1500 0.8680 38 1 1.9535 -5.2035 -0.7535 39 1 0.7187 -2.1604 -2.5743 40 1 1.4180 -3.5238 -3.4802 41 1 0.9166 -3.7444 -1.7867 42 1 3.9337 -0.5696 -4.4136 43 1 2.2804 -1.2249 -4.3402 44 1 2.8906 -0.1993 -3.0196 45 1 6.2948 -4.4833 -5.8729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548530899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:51 Heat of formation + Delta-G solvation = -87.555758 kcal Electronic energy + Delta-G solvation = -29682.680094 eV Core-core repulsion = 25792.433726 eV Total energy + Delta-G solvation = -3890.246368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54820 -39.52736 -38.18306 -37.21706 -37.01663 -36.04393 -34.79201 -33.06977 -32.47552 -31.36082 -28.35248 -27.75475 -27.30652 -25.35875 -24.49553 -23.25231 -22.72015 -20.64139 -19.83521 -19.33297 -18.77253 -17.98412 -17.76489 -17.43746 -17.13608 -16.41076 -16.19209 -15.96740 -15.67836 -15.36963 -15.26216 -14.85297 -14.48350 -14.34080 -14.28158 -14.20257 -14.07702 -13.78440 -13.44108 -13.25908 -13.21831 -13.16156 -13.11807 -13.01884 -12.91570 -12.69969 -12.59366 -12.46992 -12.44985 -12.29863 -11.84302 -11.80166 -11.28704 -11.28355 -10.83261 -10.79417 -10.43764 -10.05524 -9.41102 -8.40062 -6.42733 -1.02241 -0.39416 0.03943 1.22529 1.31095 1.40333 1.50338 1.75593 2.08685 2.24474 2.34939 2.70260 3.00512 3.13990 3.41382 3.47399 3.59028 3.82747 3.99992 4.06820 4.24081 4.27730 4.36142 4.43783 4.51791 4.54546 4.55290 4.62739 4.67295 4.72108 4.76096 4.78443 4.85364 4.94321 4.97666 5.01445 5.14012 5.15542 5.16633 5.26295 5.32065 5.51604 5.72891 5.74837 6.10348 6.57118 6.63275 7.10619 7.26155 8.74640 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005159 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.201301 B = 5425.990536 C = 6250.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.558 4.558 3 C -0.150 4.150 4 S 2.461 3.539 5 O -0.957 6.957 6 O -0.956 6.956 7 C -0.633 4.633 8 C -0.034 4.034 9 C -0.111 4.111 10 C -0.056 4.056 11 C -0.118 4.118 12 C -0.043 4.043 13 C 0.498 3.502 14 O -0.544 6.544 15 N -0.580 5.580 16 C 0.062 3.938 17 C 0.216 3.784 18 H 0.041 0.959 19 C -0.141 4.141 20 C -0.515 4.515 21 H 0.063 0.937 22 C 0.036 3.964 23 N -0.929 5.929 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.273 1.273 27 H -0.250 1.250 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.770 4.761 12.354 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.671 4.671 3 C -0.209 4.209 4 S 2.646 3.354 5 O -0.954 6.954 6 O -0.953 6.953 7 C -0.722 4.722 8 C -0.053 4.053 9 C -0.129 4.129 10 C -0.073 4.073 11 C -0.137 4.137 12 C -0.047 4.047 13 C 0.284 3.716 14 O -0.422 6.422 15 N -0.311 5.311 16 C -0.079 4.079 17 C 0.114 3.886 18 H 0.059 0.941 19 C -0.200 4.200 20 C -0.553 4.553 21 H 0.081 0.919 22 C -0.164 4.164 23 N -0.568 5.568 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.198 1.198 27 H -0.173 1.173 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.194 0.806 38 H 0.155 0.845 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.573 5.231 13.091 22.529 hybrid contribution 1.344 -0.490 -0.854 1.665 sum -16.230 4.742 12.238 20.872 Atomic orbital electron populations 1.21783 0.86694 1.04780 1.06508 1.29943 1.09613 1.09780 1.17807 1.21803 1.01560 0.90805 1.06695 1.06397 0.75012 0.75813 0.78207 1.93474 1.75844 1.80553 1.45540 1.93694 1.28982 1.85569 1.87042 1.30363 1.12881 1.24081 1.04833 1.21283 0.91208 0.97063 0.95700 1.21927 0.99847 0.92736 0.98421 1.21872 0.92508 1.01388 0.91563 1.21585 0.97861 0.93156 1.01123 1.19568 0.94874 0.96650 0.93593 1.19281 0.87727 0.80717 0.83842 1.90986 1.24747 1.47807 1.78686 1.48276 1.14924 1.62900 1.05006 1.22156 0.81878 1.01729 1.02186 1.19316 0.88933 0.93537 0.86800 0.94072 1.22097 1.01694 0.96355 0.99811 1.21320 0.95909 1.15732 1.22369 0.91913 1.25492 1.00491 0.95743 0.94677 1.69962 1.23328 1.35832 1.27688 0.86295 0.80823 0.81223 0.78057 1.21623 1.19809 1.17339 0.87779 0.90377 0.89227 0.85411 0.92438 0.86933 0.89279 0.82013 0.80249 0.80622 0.84463 0.90268 0.90914 0.89225 0.93106 0.91291 0.93087 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.02 71.98 0.65 -1.60 16 2 C -0.56 -13.79 3.22 30.59 0.10 -13.69 16 3 C -0.15 -3.24 9.20 71.98 0.66 -2.58 16 4 S 2.46 79.66 4.12 -56.49 -0.23 79.43 16 5 O -0.96 -30.20 16.57 -127.65 -2.12 -32.31 16 6 O -0.96 -42.15 14.77 -118.57 -1.75 -43.90 16 7 C -0.63 -18.49 4.92 22.52 0.11 -18.38 16 8 C -0.03 -0.72 9.49 22.23 0.21 -0.51 16 9 C -0.11 -1.64 10.04 22.33 0.22 -1.41 16 10 C -0.06 -0.91 10.03 22.23 0.22 -0.68 16 11 C -0.12 -2.99 7.58 22.53 0.17 -2.82 16 12 C -0.04 -1.38 4.77 -20.09 -0.10 -1.48 16 13 C 0.50 20.68 4.72 86.79 0.41 21.09 16 14 O -0.54 -28.15 13.35 18.98 0.25 -27.90 16 15 N -0.58 -22.74 2.38 -830.22 -1.97 -24.72 16 16 C 0.06 1.80 9.51 127.77 1.21 3.02 16 17 C 0.22 10.01 2.27 44.24 0.10 10.11 16 18 H 0.04 2.18 3.84 -2.39 -0.01 2.17 16 19 C -0.14 -5.41 9.10 71.98 0.65 -4.76 16 20 C -0.51 -27.48 8.75 25.60 0.22 -27.26 16 21 H 0.06 3.51 6.77 -2.91 -0.02 3.49 16 22 C 0.04 2.05 5.47 84.66 0.46 2.51 16 23 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 24 Si 0.91 46.11 27.31 68.60 1.87 47.98 16 25 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 26 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.25 -12.19 6.37 99.48 0.63 -11.56 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.11 7.52 -2.38 -0.02 1.09 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 3.58 6.03 -2.39 -0.01 3.56 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.16 2.90 7.21 -2.91 -0.02 2.88 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.14 3.54 7.83 -2.91 -0.02 3.51 16 39 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 2.31 6.54 -2.39 -0.02 2.29 16 41 H 0.09 2.13 4.72 -2.39 -0.01 2.12 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.38 7.84 -2.39 -0.02 2.36 16 44 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 45 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -83.33 368.87 2.60 -80.74 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.92 Total: 14.41 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 5.32 Total: -38.43 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.67 Total: -80.01 kcal Atomic # 8 Polarization: -100.50 SS G_CDS: -3.61 Total: -104.12 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.87 Total: 47.98 kcal Atomic # 16 Polarization: 79.66 SS G_CDS: -0.23 Total: 79.43 kcal Total: -83.33 2.60 -80.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.819 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds