Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 C 1.50705 * 109.47226 * 239.99742 * 2 1 3 5 5 H 1.07995 * 120.00046 * 245.46570 * 4 2 1 6 6 C 1.37880 * 119.99471 * 65.46049 * 4 2 1 7 7 N 1.31514 * 120.00329 * 9.54941 * 6 4 2 8 8 Si 1.86798 * 119.99468 * 189.54551 * 6 4 2 9 9 H 1.48498 * 109.47177 * 84.99960 * 8 6 4 10 10 H 1.48502 * 109.47111 * 204.99631 * 8 6 4 11 11 H 1.48500 * 109.47453 * 324.99937 * 8 6 4 12 12 N 1.46898 * 109.47160 * 120.00088 * 2 1 3 13 13 C 1.46910 * 111.00006 * 274.99640 * 12 2 1 14 14 C 1.50697 * 109.47303 * 179.97438 * 13 12 2 15 15 C 1.38241 * 119.91223 * 260.00525 * 14 13 12 16 16 C 1.38031 * 120.17948 * 179.97438 * 15 14 13 17 17 C 1.39349 * 119.99364 * 0.02562 * 16 15 14 18 18 C 1.48468 * 120.09368 * 179.97438 * 17 16 15 19 19 N 1.34046 * 126.67343 * 179.69053 * 18 17 16 20 20 N 1.28991 * 107.26426 * 179.86500 * 19 18 17 21 21 N 1.28726 * 108.94551 * 0.39923 * 20 19 18 22 22 H 0.96996 * 125.34655 * 179.77264 * 21 20 19 23 23 N 1.28880 * 109.31784 * 359.74037 * 21 20 19 24 24 C 1.39201 * 119.81658 * 359.95578 * 17 16 15 25 25 C 1.38558 * 119.82478 * 0.04860 * 24 17 16 26 26 O 1.35907 * 119.99602 * 179.97438 * 25 24 17 27 27 C 1.42900 * 116.99633 * 359.97438 * 26 25 24 28 28 F 1.39901 * 109.47619 * 299.99636 * 27 26 25 29 29 F 1.39897 * 109.47259 * 60.00496 * 27 26 25 30 30 H 1.08999 * 109.47479 * 183.76051 * 1 2 3 31 31 H 1.09001 * 109.47216 * 303.75789 * 1 2 3 32 32 H 1.09000 * 109.47304 * 63.75510 * 1 2 3 33 33 H 0.96997 * 119.99745 * 180.02562 * 7 6 4 34 34 H 1.00902 * 111.00093 * 151.04687 * 12 2 1 35 35 H 1.09000 * 109.46446 * 59.99918 * 13 12 2 36 36 H 1.08995 * 109.46797 * 300.00545 * 13 12 2 37 37 H 1.08006 * 119.91412 * 359.97438 * 15 14 13 38 38 H 1.08007 * 120.00796 * 179.74314 * 16 15 14 39 39 H 1.07996 * 120.08286 * 180.02562 * 24 17 16 40 40 H 1.09011 * 109.46625 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.2990 1.0355 -2.5935 8 14 2.1763 -1.1780 -4.0101 9 1 1.0245 -2.0611 -4.3242 10 1 2.4229 -0.2613 -5.1521 11 1 3.3848 -2.0071 -3.7708 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5217 3.5560 15 6 1.6946 -0.9731 4.5101 16 6 2.1509 -1.6559 5.6195 17 6 3.5149 -1.8915 5.7802 18 6 4.0082 -2.6252 6.9729 19 7 5.2830 -2.9280 7.2559 20 7 5.2853 -3.5638 8.3782 21 7 4.0735 -3.6757 8.7978 22 1 3.8021 -4.1158 9.6184 23 7 3.2773 -3.1104 7.9566 24 6 4.4137 -1.4372 4.8191 25 6 3.9473 -0.7525 3.7085 26 8 4.8218 -0.3070 2.7683 27 6 6.2069 -0.5795 2.9899 28 9 6.6125 0.0124 4.1908 29 9 6.4045 -1.9626 3.0615 30 1 -0.3634 -1.0254 0.0674 31 1 -0.3634 0.5711 0.8544 32 1 -0.3634 0.4544 -0.9217 33 1 1.1314 1.4103 -3.4723 34 1 2.9173 -1.1205 1.0287 35 1 1.0871 0.6164 2.5525 36 1 2.7588 1.0462 2.1181 37 1 0.6371 -0.7909 4.3872 38 1 1.4513 -2.0037 6.3653 39 1 5.4717 -1.6178 4.9391 40 1 6.7937 -0.1713 2.1668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = 5.520643 kcal Electronic energy + Delta-G solvation = -29110.287980 eV Core-core repulsion = 24598.989729 eV Total energy + Delta-G solvation = -4511.298252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.35685 -47.33881 -44.65307 -40.19029 -37.61898 -36.01392 -34.57964 -33.82058 -32.60226 -31.00372 -30.39289 -28.33962 -26.25006 -25.67383 -24.98139 -24.75988 -22.99506 -22.43552 -21.21875 -19.80126 -19.54776 -18.81778 -17.95917 -17.90649 -17.34022 -16.68737 -16.29706 -15.86175 -15.08104 -14.92091 -14.65803 -14.39128 -14.21761 -14.04463 -13.82601 -13.68149 -13.55963 -13.37776 -12.97898 -12.68398 -12.56567 -12.44031 -12.37418 -11.86723 -11.61852 -11.55273 -11.46426 -11.22892 -11.05646 -10.87318 -10.78830 -10.66282 -10.32007 -10.21367 -9.94701 -8.91783 -8.79113 -8.43212 -8.32883 -7.26212 -6.05297 -4.06967 0.55577 1.00734 1.30044 2.01071 2.21358 2.56164 3.31482 3.37721 3.39828 3.40645 3.52266 3.67820 4.00568 4.30525 4.42179 4.62380 4.74811 4.84715 5.00907 5.15695 5.18324 5.28974 5.32241 5.51140 5.60519 5.75754 5.88282 6.06802 6.18044 6.25081 6.31189 6.46087 6.63771 6.83031 7.00077 7.09630 7.17242 7.40171 7.79727 7.86014 7.93790 8.17471 8.35767 8.67696 9.03750 9.57835 11.03940 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.002889 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.268714 B = 9688.079389 C =10544.083081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.210 3.790 3 H 0.010 0.990 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.681 5.681 13 C 0.098 3.902 14 C -0.054 4.054 15 C -0.076 4.076 16 C -0.101 4.101 17 C 0.001 3.999 18 C 0.228 3.772 19 N -0.266 5.266 20 N -0.051 5.051 21 N -0.230 5.230 22 H 0.475 0.525 23 N -0.293 5.293 24 C -0.149 4.149 25 C 0.108 3.892 26 O -0.307 6.307 27 C 0.409 3.591 28 F -0.200 7.200 29 F -0.197 7.197 30 H 0.034 0.966 31 H 0.009 0.991 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.335 0.665 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -4.568 20.726 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.028 0.972 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.031 4.031 14 C -0.056 4.056 15 C -0.094 4.094 16 C -0.122 4.122 17 C -0.003 4.003 18 C -0.052 4.052 19 N -0.139 5.139 20 N -0.047 5.047 21 N -0.075 5.075 22 H 0.329 0.671 23 N -0.145 5.145 24 C -0.170 4.170 25 C 0.064 3.936 26 O -0.224 6.224 27 C 0.319 3.681 28 F -0.182 7.182 29 F -0.178 7.178 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.982 -4.860 20.988 22.359 hybrid contribution 0.663 -0.292 -0.582 0.929 sum 6.645 -5.153 20.407 22.071 Atomic orbital electron populations 1.21657 0.98277 0.98850 0.98997 1.19122 0.92088 0.93011 0.85490 0.97223 1.21211 1.35881 1.08154 0.90543 0.92190 1.24904 0.95261 0.94601 0.98991 1.69969 1.44996 1.13958 1.23808 0.86610 0.78786 0.80066 0.82516 1.20524 1.21421 1.19952 1.60845 1.32494 1.32374 1.05529 1.20844 0.99985 0.93566 0.88754 1.19703 0.89080 0.99156 0.97690 1.20869 0.99930 0.96422 0.92214 1.21098 0.93490 0.99017 0.98573 1.16827 0.93277 1.00043 0.90148 1.23649 0.86354 0.99634 0.95569 1.76131 1.19350 1.12514 1.05933 1.78912 1.04733 1.14097 1.06929 1.47725 1.02701 1.37034 1.20087 0.67119 1.74934 1.22587 1.14459 1.02482 1.21421 1.01111 1.00622 0.93808 1.18501 0.89576 0.96938 0.88604 1.86743 1.15395 1.74717 1.45558 1.23434 0.82855 0.75634 0.86190 1.93092 1.90399 1.83707 1.51036 1.93107 1.94695 1.33307 1.96737 0.94636 0.97241 0.91859 0.92919 0.84757 0.90544 0.94392 0.83971 0.84711 0.83763 0.80104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.27 37.16 0.34 -2.50 16 2 C 0.21 5.20 2.47 -68.87 -0.17 5.03 16 3 H 0.01 0.27 7.74 -51.93 -0.40 -0.13 16 4 C -0.52 -14.08 8.48 -34.44 -0.29 -14.37 16 5 H 0.06 1.62 7.69 -52.49 -0.40 1.22 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -25.26 12.16 55.43 0.67 -24.58 16 8 Si 0.89 21.13 29.55 -169.99 -5.02 16.10 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.68 -14.28 6.29 -109.22 -0.69 -14.96 16 13 C 0.10 1.71 5.27 -4.97 -0.03 1.69 16 14 C -0.05 -0.83 5.41 -104.42 -0.56 -1.39 16 15 C -0.08 -0.98 9.65 -39.66 -0.38 -1.36 16 16 C -0.10 -1.23 9.70 -39.24 -0.38 -1.61 16 17 C 0.00 0.01 5.87 -104.91 -0.62 -0.61 16 18 C 0.23 2.96 7.94 -156.30 -1.24 1.72 16 19 N -0.27 -3.61 12.23 32.16 0.39 -3.22 16 20 N -0.05 -0.56 13.47 60.35 0.81 0.25 16 21 N -0.23 -1.83 7.90 60.35 0.48 -1.35 16 22 H 0.47 1.29 8.96 -340.37 -3.05 -1.76 16 23 N -0.29 -3.14 12.08 32.17 0.39 -2.75 16 24 C -0.15 -2.13 7.91 -39.11 -0.31 -2.44 16 25 C 0.11 1.62 6.45 -39.26 -0.25 1.37 16 26 O -0.31 -4.46 9.59 -19.45 -0.19 -4.65 16 27 C 0.41 4.62 5.97 101.05 0.60 5.23 16 28 F -0.20 -2.42 15.58 2.25 0.04 -2.39 16 29 F -0.20 -2.54 15.58 2.25 0.04 -2.50 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.01 0.19 7.55 -51.93 -0.39 -0.21 16 32 H 0.06 1.64 6.83 -51.93 -0.35 1.29 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.34 7.14 8.18 -39.29 -0.32 6.82 16 35 H 0.08 1.29 7.36 -51.93 -0.38 0.90 16 36 H 0.04 0.70 7.76 -51.93 -0.40 0.29 16 37 H 0.14 1.58 8.03 -52.48 -0.42 1.16 16 38 H 0.14 1.36 7.88 -52.48 -0.41 0.95 16 39 H 0.14 2.08 4.92 -52.49 -0.26 1.82 16 40 H 0.18 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.63 352.79 -7.93 -40.56 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.78 Total: 1.75 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.38 Total: -7.58 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 2.06 Total: -46.61 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.07 Total: -4.89 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.63 -7.93 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.081 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds