Wall clock time and date at job start Sat Apr 11 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 C 1.50705 * 109.47226 * 239.99742 * 2 1 3 5 5 H 1.07995 * 120.00046 * 245.46570 * 4 2 1 6 6 C 1.37880 * 119.99471 * 65.46049 * 4 2 1 7 7 N 1.31514 * 120.00329 * 9.54941 * 6 4 2 8 8 Si 1.86798 * 119.99468 * 189.54551 * 6 4 2 9 9 H 1.48498 * 109.47177 * 84.99960 * 8 6 4 10 10 H 1.48502 * 109.47111 * 204.99631 * 8 6 4 11 11 H 1.48500 * 109.47453 * 324.99937 * 8 6 4 12 12 N 1.46898 * 109.47160 * 120.00088 * 2 1 3 13 13 C 1.46910 * 111.00006 * 274.99640 * 12 2 1 14 14 C 1.50697 * 109.47303 * 179.97438 * 13 12 2 15 15 C 1.38241 * 119.91223 * 260.00525 * 14 13 12 16 16 C 1.38031 * 120.17948 * 179.97438 * 15 14 13 17 17 C 1.39349 * 119.99364 * 0.02562 * 16 15 14 18 18 C 1.48468 * 120.09368 * 179.97438 * 17 16 15 19 19 N 1.34046 * 126.67343 * 179.69053 * 18 17 16 20 20 N 1.28991 * 107.26426 * 179.86500 * 19 18 17 21 21 N 1.28726 * 108.94551 * 0.39923 * 20 19 18 22 22 H 0.96996 * 125.34655 * 179.77264 * 21 20 19 23 23 N 1.28880 * 109.31784 * 359.74037 * 21 20 19 24 24 C 1.39201 * 119.81658 * 359.95578 * 17 16 15 25 25 C 1.38558 * 119.82478 * 0.04860 * 24 17 16 26 26 O 1.35907 * 119.99602 * 179.97438 * 25 24 17 27 27 C 1.42900 * 116.99633 * 359.97438 * 26 25 24 28 28 F 1.39901 * 109.47619 * 299.99636 * 27 26 25 29 29 F 1.39897 * 109.47259 * 60.00496 * 27 26 25 30 30 H 1.08999 * 109.47479 * 183.76051 * 1 2 3 31 31 H 1.09001 * 109.47216 * 303.75789 * 1 2 3 32 32 H 1.09000 * 109.47304 * 63.75510 * 1 2 3 33 33 H 0.96997 * 119.99745 * 180.02562 * 7 6 4 34 34 H 1.00902 * 111.00093 * 151.04687 * 12 2 1 35 35 H 1.09000 * 109.46446 * 59.99918 * 13 12 2 36 36 H 1.08995 * 109.46797 * 300.00545 * 13 12 2 37 37 H 1.08006 * 119.91412 * 359.97438 * 15 14 13 38 38 H 1.08007 * 120.00796 * 179.74314 * 16 15 14 39 39 H 1.07996 * 120.08286 * 180.02562 * 24 17 16 40 40 H 1.09011 * 109.46625 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.2990 1.0355 -2.5935 8 14 2.1763 -1.1780 -4.0101 9 1 1.0245 -2.0611 -4.3242 10 1 2.4229 -0.2613 -5.1521 11 1 3.3848 -2.0071 -3.7708 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5217 3.5560 15 6 1.6946 -0.9731 4.5101 16 6 2.1509 -1.6559 5.6195 17 6 3.5149 -1.8915 5.7802 18 6 4.0082 -2.6252 6.9729 19 7 5.2830 -2.9280 7.2559 20 7 5.2853 -3.5638 8.3782 21 7 4.0735 -3.6757 8.7978 22 1 3.8021 -4.1158 9.6184 23 7 3.2773 -3.1104 7.9566 24 6 4.4137 -1.4372 4.8191 25 6 3.9473 -0.7525 3.7085 26 8 4.8218 -0.3070 2.7683 27 6 6.2069 -0.5795 2.9899 28 9 6.6125 0.0124 4.1908 29 9 6.4045 -1.9626 3.0615 30 1 -0.3634 -1.0254 0.0674 31 1 -0.3634 0.5711 0.8544 32 1 -0.3634 0.4544 -0.9217 33 1 1.1314 1.4103 -3.4723 34 1 2.9173 -1.1205 1.0287 35 1 1.0871 0.6164 2.5525 36 1 2.7588 1.0462 2.1181 37 1 0.6371 -0.7909 4.3872 38 1 1.4513 -2.0037 6.3653 39 1 5.4717 -1.6178 4.9391 40 1 6.7937 -0.1713 2.1668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:09 Heat of formation + Delta-G solvation = -17.622856 kcal Electronic energy + Delta-G solvation = -29111.291558 eV Core-core repulsion = 24598.989729 eV Total energy + Delta-G solvation = -4512.301829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.30226 -48.29327 -45.51566 -41.26419 -38.66240 -37.67827 -35.56331 -35.01307 -34.16294 -32.38618 -31.47076 -29.92856 -27.40311 -27.15912 -26.56848 -25.67953 -24.16736 -23.44215 -22.34641 -21.66486 -20.40297 -19.80194 -18.94498 -18.86833 -18.50850 -18.18983 -17.27389 -17.17715 -16.67668 -16.19702 -15.86331 -15.75442 -15.29672 -15.21945 -15.12337 -14.87095 -14.68946 -14.60571 -14.34993 -13.94626 -13.65557 -13.52850 -13.44912 -13.33624 -13.08795 -12.87138 -12.71144 -12.61128 -12.43323 -12.31741 -12.21437 -12.13237 -12.03779 -11.81826 -11.65189 -10.89694 -10.50720 -9.87036 -9.43327 -8.98353 -8.13811 -6.22243 -0.43171 0.11898 0.26391 1.20873 1.37694 1.43886 1.46080 1.54620 1.63035 2.44303 2.48804 2.61429 2.62928 3.09462 3.18242 3.51649 3.61746 3.70500 3.77040 3.93744 4.03462 4.13204 4.20628 4.39550 4.44638 4.61515 4.73337 4.85737 4.92458 5.03290 5.13070 5.23737 5.27694 5.38916 5.46880 5.56192 5.59842 5.70138 5.88637 5.94331 6.20126 6.48466 6.80943 7.02800 7.06177 7.46874 8.95099 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.002889 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.268714 B = 9688.079389 C =10544.083081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.215 3.785 3 H -0.023 1.023 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.676 5.676 13 C 0.105 3.895 14 C -0.075 4.075 15 C -0.068 4.068 16 C -0.093 4.093 17 C 0.000 4.000 18 C 0.211 3.789 19 N -0.297 5.297 20 N -0.055 5.055 21 N -0.196 5.196 22 H 0.496 0.504 23 N -0.284 5.284 24 C -0.159 4.159 25 C 0.100 3.900 26 O -0.326 6.326 27 C 0.404 3.596 28 F -0.206 7.206 29 F -0.207 7.207 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.331 0.669 35 H 0.084 0.916 36 H 0.024 0.976 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -5.791 22.075 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 H -0.006 1.006 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.307 5.307 13 C -0.024 4.024 14 C -0.077 4.077 15 C -0.086 4.086 16 C -0.113 4.113 17 C -0.003 4.003 18 C -0.069 4.069 19 N -0.169 5.169 20 N -0.050 5.050 21 N -0.048 5.048 22 H 0.356 0.644 23 N -0.137 5.137 24 C -0.180 4.180 25 C 0.056 3.944 26 O -0.244 6.244 27 C 0.315 3.685 28 F -0.188 7.188 29 F -0.189 7.189 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.629 -6.102 22.378 23.868 hybrid contribution 0.796 0.045 -0.812 1.139 sum 6.426 -6.057 21.565 23.303 Atomic orbital electron populations 1.21488 0.97541 0.98992 0.98675 1.18923 0.92614 0.91207 0.86549 1.00578 1.21529 1.35982 1.08138 0.91841 0.92579 1.25653 0.95177 0.95441 1.01844 1.70080 1.45901 1.15259 1.24469 0.85625 0.78759 0.78643 0.78934 1.20111 1.21043 1.19277 1.60776 1.32215 1.32632 1.05032 1.20757 1.00229 0.92927 0.88455 1.19579 0.89657 1.00824 0.97673 1.21110 1.00588 0.95322 0.91569 1.21311 0.93270 0.98140 0.98618 1.17028 0.93814 0.99431 0.90062 1.23602 0.86528 1.00645 0.96137 1.76119 1.20074 1.13674 1.07057 1.78858 1.05561 1.14111 1.06470 1.47800 1.01736 1.35190 1.20064 0.64439 1.74887 1.22515 1.14084 1.02179 1.21399 1.01146 1.01279 0.94127 1.18635 0.89785 0.97086 0.88910 1.86722 1.16781 1.74934 1.45928 1.24165 0.82004 0.75192 0.87118 1.93074 1.90275 1.83706 1.51742 1.93080 1.94629 1.34386 1.96817 0.94448 0.94927 0.94402 0.92856 0.85202 0.89753 0.95751 0.81902 0.82184 0.84286 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 9.27 71.98 0.67 -4.50 16 2 C 0.22 10.81 2.47 44.17 0.11 10.92 16 3 H -0.02 -1.31 7.74 -2.39 -0.02 -1.33 16 4 C -0.54 -29.36 8.48 25.60 0.22 -29.14 16 5 H 0.06 3.05 7.69 -2.91 -0.02 3.02 16 6 C 0.02 1.01 5.17 84.66 0.44 1.45 16 7 N -0.92 -52.84 12.16 21.45 0.26 -52.58 16 8 Si 0.95 43.33 29.55 68.60 2.03 45.36 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.68 -28.47 6.29 -499.46 -3.14 -31.61 16 13 C 0.11 3.69 5.27 85.55 0.45 4.14 16 14 C -0.08 -2.26 5.41 -19.73 -0.11 -2.36 16 15 C -0.07 -1.62 9.65 22.22 0.21 -1.41 16 16 C -0.09 -2.06 9.70 22.49 0.22 -1.84 16 17 C 0.00 0.01 5.87 -20.05 -0.12 -0.11 16 18 C 0.21 5.16 7.94 137.38 1.09 6.25 16 19 N -0.30 -7.77 12.23 -52.18 -0.64 -8.41 16 20 N -0.06 -1.12 13.47 37.02 0.50 -0.62 16 21 N -0.20 -2.63 7.90 37.02 0.29 -2.34 16 22 H 0.50 1.21 8.96 -347.54 -3.12 -1.91 16 23 N -0.28 -5.37 12.08 -52.13 -0.63 -6.00 16 24 C -0.16 -4.52 7.91 22.58 0.18 -4.34 16 25 C 0.10 3.01 6.45 22.48 0.14 3.15 16 26 O -0.33 -9.61 9.59 -92.50 -0.89 -10.49 16 27 C 0.40 9.07 5.97 113.37 0.68 9.74 16 28 F -0.21 -4.99 15.58 44.97 0.70 -4.29 16 29 F -0.21 -5.37 15.58 44.97 0.70 -4.67 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.35 7.55 -2.39 -0.02 1.33 16 32 H 0.04 1.97 6.83 -2.39 -0.02 1.95 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.33 14.32 8.18 -89.69 -0.73 13.58 16 35 H 0.08 2.78 7.36 -2.39 -0.02 2.76 16 36 H 0.02 0.92 7.76 -2.39 -0.02 0.90 16 37 H 0.16 3.17 8.03 -2.91 -0.02 3.15 16 38 H 0.16 2.69 7.88 -2.91 -0.02 2.67 16 39 H 0.14 4.06 4.92 -2.91 -0.01 4.05 16 40 H 0.23 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -70.70 352.79 0.65 -70.05 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -2.71 Total: 13.66 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 4.18 Total: -8.06 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.36 Total: -101.56 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.89 Total: -10.49 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 1.40 Total: -8.96 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.70 0.65 -70.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.425 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds