Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 117.00395 * 2 1 4 4 C 1.38669 * 120.05867 * 359.97438 * 3 2 1 5 5 C 1.38178 * 119.96715 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09458 * 0.02562 * 5 4 3 7 7 C 1.38252 * 120.12586 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.98405 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47101 * 264.99507 * 8 7 6 10 10 C 1.50699 * 109.47476 * 178.72625 * 9 8 7 11 11 O 1.21290 * 119.99694 * 5.43167 * 10 9 8 12 12 N 1.34776 * 120.00004 * 185.43320 * 10 9 8 13 13 C 1.37096 * 120.00103 * 5.01114 * 12 10 9 14 14 H 1.07994 * 120.00387 * 320.69545 * 13 12 10 15 15 C 1.38957 * 119.99758 * 140.68898 * 13 12 10 16 16 N 1.31411 * 119.99878 * 159.03775 * 15 13 12 17 17 Si 1.86798 * 119.99948 * 339.04451 * 15 13 12 18 18 H 1.48495 * 109.47447 * 95.81893 * 17 15 13 19 19 H 1.48501 * 109.46678 * 215.81862 * 17 15 13 20 20 H 1.48496 * 109.47241 * 335.81144 * 17 15 13 21 21 C 1.46504 * 119.99934 * 185.01285 * 12 10 9 22 22 C 1.53010 * 109.46947 * 89.99995 * 21 12 10 23 23 C 1.50699 * 109.46691 * 180.02562 * 22 21 12 24 24 O 1.20822 * 120.00417 * 0.02562 * 23 22 21 25 25 O 1.34237 * 119.99542 * 179.97438 * 23 22 21 26 26 C 1.38335 * 120.03062 * 359.97438 * 7 6 5 27 27 F 1.35097 * 120.04437 * 180.27610 * 26 7 6 28 28 H 1.08996 * 109.46989 * 299.99849 * 1 2 3 29 29 H 1.08997 * 109.47008 * 59.99606 * 1 2 3 30 30 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.01387 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.94985 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.93115 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47243 * 24.98922 * 8 7 6 35 35 H 1.09001 * 109.47391 * 144.99651 * 8 7 6 36 36 H 1.09003 * 109.47287 * 298.73181 * 9 8 7 37 37 H 1.09004 * 109.47134 * 58.72451 * 9 8 7 38 38 H 0.96997 * 120.00112 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.47123 * 209.99446 * 21 12 10 40 40 H 1.08996 * 109.47155 * 330.00422 * 21 12 10 41 41 H 1.09003 * 109.46909 * 300.00305 * 22 21 12 42 42 H 1.08996 * 109.46844 * 60.00237 * 22 21 12 43 43 H 0.96699 * 116.99780 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9217 3.6052 -0.0011 6 6 3.3025 3.6776 -0.0016 7 6 4.0580 2.5197 -0.0021 8 6 5.5627 2.6023 -0.0021 9 6 6.0788 2.5052 -1.4392 10 6 7.5814 2.6192 -1.4422 11 8 8.1882 2.6647 -0.3929 12 7 8.2511 2.6706 -2.6107 13 6 7.5613 2.7229 -3.7943 14 1 6.6641 2.1358 -3.9229 15 6 8.0166 3.5316 -4.8285 16 7 7.6363 3.2947 -6.0639 17 14 9.1693 4.9552 -4.4628 18 1 10.5735 4.5236 -4.6799 19 1 8.8552 6.0911 -5.3664 20 1 8.9954 5.3830 -3.0515 21 6 9.7161 2.6705 -2.6160 22 6 10.2258 1.2293 -2.6814 23 6 11.7328 1.2292 -2.6863 24 8 12.3371 2.2745 -2.6415 25 8 12.4036 0.0677 -2.7393 26 6 3.4333 1.2855 -0.0016 27 9 4.1713 0.1539 0.0035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2137 2.3200 -0.0005 32 1 1.3342 4.5114 -0.0011 33 1 3.7917 4.6405 -0.0024 34 1 5.8745 3.5521 0.4324 35 1 5.9717 1.7815 0.5870 36 1 5.7863 1.5460 -1.8663 37 1 5.6520 3.3129 -2.0339 38 1 7.9537 3.8594 -6.7858 39 1 10.0763 3.2229 -3.4838 40 1 10.0828 3.1445 -1.7056 41 1 9.8655 0.6768 -1.8136 42 1 9.8591 0.7553 -3.5919 43 1 13.3693 0.1182 -2.7406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599672002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -202.873277 kcal Electronic energy + Delta-G solvation = -29269.140884 eV Core-core repulsion = 24807.680797 eV Total energy + Delta-G solvation = -4461.460087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.79161 -41.47992 -41.00362 -40.61470 -38.71121 -37.37372 -36.94103 -34.77755 -34.17221 -32.62392 -31.22016 -30.41916 -28.18247 -26.98039 -26.79058 -24.76085 -23.50990 -22.36831 -21.93350 -20.88563 -19.34735 -19.07111 -18.59235 -18.13144 -18.05740 -17.97280 -17.74424 -17.11423 -17.02992 -16.60282 -16.30420 -16.04977 -15.79653 -15.63064 -15.45395 -14.98120 -14.81537 -14.63290 -14.25822 -14.08513 -14.01000 -13.62053 -13.52651 -13.43675 -12.97022 -12.93541 -12.88963 -12.69043 -12.61755 -12.43052 -12.12404 -12.00796 -11.90682 -11.85954 -11.82953 -11.71333 -11.18088 -10.55765 -9.81967 -9.69537 -9.18348 -8.54969 -6.18500 0.13378 0.29741 1.10362 1.18377 1.30269 1.39807 1.75138 1.97645 2.15407 2.21950 2.56343 2.74859 2.92405 3.31167 3.65669 3.78499 3.84945 3.88928 4.09640 4.12275 4.23060 4.29747 4.31907 4.40227 4.41900 4.42540 4.53202 4.57173 4.64921 4.74257 4.77912 4.87124 4.93748 5.08709 5.11977 5.22019 5.35948 5.38700 5.50079 5.51547 5.71676 6.05685 6.20343 6.34774 6.91575 6.93038 7.34999 7.71173 8.58457 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002983 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.626085 B = 9382.949574 C =10266.134006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.084 3.916 4 C -0.182 4.182 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.082 4.082 8 C -0.056 4.056 9 C -0.104 4.104 10 C 0.483 3.517 11 O -0.611 6.611 12 N -0.475 5.475 13 C -0.341 4.341 14 H 0.094 0.906 15 C 0.045 3.955 16 N -0.886 5.886 17 Si 0.910 3.090 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.269 1.269 21 C 0.111 3.889 22 C -0.119 4.119 23 C 0.496 3.504 24 O -0.552 6.552 25 O -0.504 6.504 26 C 0.034 3.966 27 F -0.150 7.150 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.281 0.719 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -2.628 9.388 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.038 3.962 4 C -0.201 4.201 5 C -0.095 4.095 6 C -0.148 4.148 7 C -0.083 4.083 8 C -0.093 4.093 9 C -0.143 4.143 10 C 0.274 3.726 11 O -0.497 6.497 12 N -0.196 5.196 13 C -0.468 4.468 14 H 0.112 0.888 15 C -0.161 4.161 16 N -0.523 5.523 17 Si 0.736 3.264 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.194 1.194 21 C -0.013 4.013 22 C -0.157 4.157 23 C 0.340 3.660 24 O -0.443 6.443 25 O -0.318 6.318 26 C 0.014 3.986 27 F -0.129 7.129 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.989 -2.554 9.684 15.622 hybrid contribution 1.460 0.403 -0.412 1.570 sum -10.529 -2.151 9.271 14.193 Atomic orbital electron populations 1.23433 0.75629 1.05792 1.02847 1.86107 1.24233 1.26142 1.88811 1.19165 0.90245 0.86808 0.99977 1.21498 1.01597 0.90596 1.06368 1.21418 0.93923 0.98448 0.95677 1.21219 0.94479 0.97560 1.01535 1.19863 0.96276 0.91633 1.00491 1.20190 0.89344 1.03950 0.95852 1.21281 0.90986 1.04280 0.97768 1.21039 0.90994 0.77907 0.82629 1.90538 1.71184 1.55762 1.32216 1.43794 1.03687 1.66127 1.05992 1.18953 1.11557 1.26971 0.89324 0.88840 1.25666 0.97772 0.98087 0.94565 1.69787 1.44955 1.38024 0.99488 0.86399 0.79645 0.81378 0.78934 1.19961 1.20479 1.19372 1.21330 0.82653 0.95532 1.01752 1.21587 0.87260 0.99836 1.07065 1.23286 0.91493 0.80948 0.70264 1.90695 1.71235 1.34662 1.47686 1.84506 1.28346 1.34140 1.84798 1.17247 0.86937 0.82549 1.11864 1.91424 1.77094 1.49824 1.94593 0.90775 0.91143 0.86546 0.81364 0.81336 0.83157 0.89437 0.91670 0.90020 0.88381 0.90935 0.92049 0.91204 0.86719 0.86291 0.70923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.39 10.36 -93.02 -0.96 -9.36 16 3 C 0.08 2.18 6.69 22.53 0.15 2.33 16 4 C -0.18 -3.32 9.04 22.36 0.20 -3.12 16 5 C -0.08 -1.32 10.04 22.26 0.22 -1.10 16 6 C -0.13 -2.92 9.68 22.28 0.22 -2.71 16 7 C -0.08 -2.38 5.14 -19.84 -0.10 -2.48 16 8 C -0.06 -1.86 4.41 29.85 0.13 -1.73 16 9 C -0.10 -3.96 4.33 29.85 0.13 -3.83 16 10 C 0.48 21.77 7.62 87.66 0.67 22.44 16 11 O -0.61 -29.49 15.55 -3.06 -0.05 -29.54 16 12 N -0.47 -22.28 2.14 -635.53 -1.36 -23.64 16 13 C -0.34 -17.10 8.93 84.04 0.75 -16.35 16 14 H 0.09 4.91 7.44 -2.91 -0.02 4.89 16 15 C 0.04 2.31 5.32 84.93 0.45 2.76 16 16 N -0.89 -47.62 13.96 21.67 0.30 -47.32 16 17 Si 0.91 42.54 25.01 68.60 1.72 44.25 16 18 H -0.27 -12.84 6.71 99.48 0.67 -12.17 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 21 C 0.11 4.97 3.53 86.38 0.31 5.27 16 22 C -0.12 -4.42 6.14 29.85 0.18 -4.24 16 23 C 0.50 16.96 8.33 71.24 0.59 17.55 16 24 O -0.55 -22.23 16.74 21.97 0.37 -21.86 16 25 O -0.50 -12.69 13.42 -51.49 -0.69 -13.38 16 26 C 0.03 1.06 7.25 22.45 0.16 1.22 16 27 F -0.15 -5.46 16.41 44.97 0.74 -4.72 16 28 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.17 1.81 6.30 -2.91 -0.02 1.79 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 35 H 0.06 2.36 7.72 -2.39 -0.02 2.34 16 36 H 0.08 3.19 8.04 -2.39 -0.02 3.17 16 37 H 0.10 3.69 7.86 -2.38 -0.02 3.67 16 38 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.06 2.91 3.37 -2.39 -0.01 2.90 16 40 H 0.07 3.25 7.32 -2.39 -0.02 3.23 16 41 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 43 H 0.43 6.37 9.10 -74.06 -0.67 5.70 16 Total: -1.00 -70.99 370.14 5.59 -65.40 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.35 Total: 22.82 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 5.18 Total: 17.33 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.06 Total: -70.96 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: -1.33 Total: -74.14 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.74 Total: -4.72 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.72 Total: 44.25 kcal Total: -70.99 5.59 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599672002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.469 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds