Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47219 * 2 1 4 4 C 1.46500 * 119.99994 * 272.75855 * 3 2 1 5 5 C 1.52991 * 109.47450 * 65.86715 * 4 3 2 6 6 H 1.09004 * 110.43812 * 299.07453 * 5 4 3 7 7 C 1.54804 * 110.49211 * 176.38291 * 5 4 3 8 8 C 1.54997 * 102.09388 * 220.44414 * 7 5 4 9 9 O 1.44373 * 103.48930 * 37.02058 * 8 7 5 10 10 C 1.43739 * 106.97667 * 319.94073 * 9 8 7 11 11 S 1.65601 * 119.99655 * 92.75929 * 3 2 1 12 12 O 1.42094 * 106.40562 * 336.45875 * 11 3 2 13 13 O 1.42099 * 106.39854 * 203.53540 * 11 3 2 14 14 C 1.76200 * 107.21791 * 90.00175 * 11 3 2 15 15 C 1.38629 * 119.75491 * 89.99471 * 14 11 3 16 16 C 1.37621 * 120.25198 * 179.97438 * 15 14 11 17 17 C 1.40708 * 119.74339 * 0.02562 * 16 15 14 18 18 C 1.41401 * 120.24578 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99648 * 329.83344 * 18 17 16 20 20 C 1.39941 * 119.99848 * 149.83197 * 18 17 16 21 21 N 1.30823 * 119.99672 * 168.54556 * 20 18 17 22 22 Si 1.86797 * 120.00382 * 348.82206 * 20 18 17 23 23 H 1.48493 * 109.47380 * 93.03291 * 22 20 18 24 24 H 1.48505 * 109.46852 * 213.03148 * 22 20 18 25 25 H 1.48494 * 109.46970 * 333.02903 * 22 20 18 26 26 C 1.40716 * 119.51215 * 0.27004 * 17 16 15 27 27 C 1.37620 * 119.74444 * 359.42847 * 26 17 16 28 28 H 1.08999 * 109.46469 * 305.66824 * 1 2 3 29 29 H 1.09000 * 109.46699 * 65.66241 * 1 2 3 30 30 H 1.08997 * 109.47269 * 185.66799 * 1 2 3 31 31 H 1.09003 * 109.46927 * 240.00044 * 2 1 3 32 32 H 1.09002 * 109.46801 * 120.00301 * 2 1 3 33 33 H 1.09003 * 109.47012 * 185.87087 * 4 3 2 34 34 H 1.09005 * 109.46639 * 305.86388 * 4 3 2 35 35 H 1.09007 * 110.90718 * 338.64216 * 7 5 4 36 36 H 1.08997 * 110.90998 * 102.24206 * 7 5 4 37 37 H 1.09002 * 110.61567 * 278.51773 * 8 7 5 38 38 H 1.09002 * 110.61541 * 155.52083 * 8 7 5 39 39 H 1.09003 * 109.87916 * 267.08884 * 10 9 8 40 40 H 1.09008 * 110.00577 * 146.00970 * 10 9 8 41 41 H 1.08007 * 119.87168 * 0.02624 * 15 14 11 42 42 H 1.08002 * 120.12761 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00213 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12889 * 179.70520 * 26 17 16 45 45 H 1.07996 * 119.87693 * 180.31214 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2050 2.0922 -1.2673 5 6 0.8468 2.3012 -1.9396 6 1 0.3760 1.3415 -2.1531 7 6 1.0063 3.1302 -3.2372 8 6 -0.2246 4.0701 -3.1755 9 8 -0.3431 4.3780 -1.7699 10 6 -0.0683 3.1647 -1.0499 11 16 2.3595 2.1388 1.4325 12 8 1.5971 1.4732 2.4299 13 8 2.2620 3.5340 1.1817 14 6 4.0519 1.8170 1.8027 15 6 5.0328 2.6837 1.3461 16 6 6.3577 2.4425 1.6297 17 6 6.7150 1.3108 2.3857 18 6 8.0730 1.0531 2.6837 19 1 8.8457 1.3700 1.9989 20 6 8.4158 0.3875 3.8660 21 7 9.6364 -0.0498 4.0401 22 14 7.1286 0.1165 5.1922 23 1 6.4905 -1.2104 4.9991 24 1 7.7762 0.1647 6.5277 25 1 6.0959 1.1799 5.1043 26 6 5.7114 0.4346 2.8386 27 6 4.3924 0.6990 2.5484 28 1 -0.3632 0.5992 0.8349 29 1 -0.3633 0.4235 -0.9364 30 1 -0.3633 -1.0226 0.1015 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6686 3.0600 -1.0760 34 1 2.8482 1.5043 -1.9223 35 1 1.9339 3.7025 -3.2216 36 1 0.9618 2.4882 -4.1169 37 1 -1.1176 3.5570 -3.5327 38 1 -0.0446 4.9767 -3.7532 39 1 -0.9990 2.6336 -0.8497 40 1 0.4365 3.3941 -0.1114 41 1 4.7561 3.5519 0.7663 42 1 7.1203 3.1188 1.2726 43 1 9.8742 -0.5108 4.8597 44 1 5.9749 -0.4395 3.4155 45 1 3.6200 0.0306 2.8992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645586353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -105.586685 kcal Electronic energy + Delta-G solvation = -28388.584394 eV Core-core repulsion = 24497.556146 eV Total energy + Delta-G solvation = -3891.028248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.71264 -37.92557 -36.83995 -36.71102 -35.29493 -34.01658 -32.68630 -30.92750 -30.47611 -29.98389 -29.22288 -25.76504 -25.40960 -23.16833 -22.25822 -21.97783 -21.14674 -20.52376 -18.66378 -17.81698 -17.64672 -16.97943 -16.48849 -16.24246 -15.77816 -15.46099 -15.03680 -14.62541 -14.23652 -14.14343 -13.78940 -13.67857 -13.33056 -13.10324 -12.99377 -12.88950 -12.59867 -12.52902 -12.25999 -12.12474 -11.84588 -11.63621 -11.54328 -11.50609 -11.39232 -11.32684 -11.11494 -11.07892 -10.74416 -10.74009 -10.52647 -10.50145 -9.93953 -9.88524 -9.67939 -9.44945 -8.89557 -8.17344 -7.98014 -7.32988 -4.96056 0.99642 1.97199 2.51892 2.90047 3.04134 3.12365 3.38934 3.72799 3.85977 4.10118 4.29869 4.43759 4.51174 4.71832 4.82481 4.93744 5.03707 5.07816 5.10831 5.17333 5.25847 5.32454 5.45390 5.53236 5.56427 5.65274 5.72569 5.73383 5.78428 5.79624 5.82899 5.90974 6.02354 6.19870 6.24194 6.25035 6.44292 6.52586 6.75774 6.82422 6.86163 7.09281 7.17182 7.23531 7.53293 7.79489 7.96789 8.28957 8.39317 9.65948 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.003285 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.789243 B = 8521.103341 C = 8942.711911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 N -1.004 6.004 4 C 0.131 3.869 5 C -0.139 4.139 6 H 0.092 0.908 7 C -0.150 4.150 8 C 0.045 3.955 9 O -0.375 6.375 10 C 0.045 3.955 11 S 2.685 3.315 12 O -0.976 6.976 13 O -0.974 6.974 14 C -0.791 4.791 15 C 0.004 3.996 16 C -0.220 4.220 17 C 0.117 3.883 18 C -0.413 4.413 19 H 0.099 0.901 20 C 0.078 3.922 21 N -0.785 5.785 22 Si 0.917 3.083 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.237 1.237 26 C -0.252 4.252 27 C 0.013 3.987 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.294 0.706 44 H 0.105 0.895 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -0.412 -11.452 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.002 4.002 3 N -0.838 5.838 4 C 0.005 3.995 5 C -0.160 4.160 6 H 0.110 0.890 7 C -0.188 4.188 8 C -0.032 4.032 9 O -0.293 6.293 10 C -0.032 4.032 11 S 2.785 3.215 12 O -0.967 6.967 13 O -0.964 6.964 14 C -0.887 4.887 15 C -0.016 4.016 16 C -0.240 4.240 17 C 0.112 3.888 18 C -0.440 4.440 19 H 0.117 0.883 20 C -0.144 4.144 21 N -0.406 5.406 22 Si 0.743 3.257 23 H -0.191 1.191 24 H -0.214 1.214 25 H -0.160 1.160 26 C -0.272 4.272 27 C -0.007 4.007 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.129 0.147 -10.756 17.758 hybrid contribution 0.511 -0.904 0.400 1.113 sum -13.618 -0.757 -10.356 17.125 Atomic orbital electron populations 1.22450 0.96430 1.02415 1.02519 1.21123 0.94064 0.81740 1.03248 1.57844 1.80819 1.23490 1.21688 1.21319 0.95484 0.97668 0.84988 1.23062 0.97681 1.00002 0.95209 0.88985 1.23180 0.99943 0.98384 0.97307 1.23539 0.96590 0.99192 0.83889 1.88906 1.91617 1.31882 1.16927 1.23385 0.97860 0.85268 0.96650 1.01634 0.74910 0.72968 0.72009 1.93493 1.70388 1.76109 1.56712 1.93504 1.87583 1.30441 1.84882 1.29341 1.21153 1.11646 1.26514 1.20242 0.92852 0.94794 0.93687 1.21038 0.94814 0.99333 1.08824 1.17936 0.92944 0.89263 0.88620 1.19873 0.92526 1.27330 1.04243 0.88291 1.26373 0.96695 0.91101 1.00258 1.69626 1.19911 1.24203 1.26876 0.86229 0.80683 0.81269 0.77566 1.19090 1.21426 1.15993 1.21055 0.93240 1.01959 1.10963 1.20193 0.95946 0.92811 0.91749 0.91780 0.92165 0.91690 0.90552 0.90073 0.88782 0.90680 0.89883 0.90080 0.92480 0.89064 0.92632 0.89006 0.87270 0.87363 0.89564 0.87703 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.62 37.16 0.36 -1.50 16 2 C 0.12 1.43 5.84 -4.04 -0.02 1.41 16 3 N -1.00 -13.80 2.48 -114.38 -0.28 -14.09 16 4 C 0.13 1.54 4.95 -4.05 -0.02 1.52 16 5 C -0.14 -1.43 2.45 -89.10 -0.22 -1.65 16 6 H 0.09 0.79 5.81 -51.93 -0.30 0.49 16 7 C -0.15 -1.27 6.71 -24.73 -0.17 -1.44 16 8 C 0.04 0.42 7.72 38.21 0.29 0.72 16 9 O -0.37 -5.18 11.52 -35.23 -0.41 -5.58 16 10 C 0.05 0.59 6.72 37.73 0.25 0.84 16 11 S 2.69 48.80 5.23 -107.50 -0.56 48.24 16 12 O -0.98 -19.48 16.08 -57.17 -0.92 -20.40 16 13 O -0.97 -19.27 14.17 -57.17 -0.81 -20.08 16 14 C -0.79 -16.32 6.00 -39.29 -0.24 -16.55 16 15 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 16 C -0.22 -4.89 9.80 -38.87 -0.38 -5.27 16 17 C 0.12 2.80 5.17 -106.83 -0.55 2.24 16 18 C -0.41 -10.33 9.62 -37.74 -0.36 -10.69 16 19 H 0.10 2.55 8.06 -52.49 -0.42 2.12 16 20 C 0.08 1.91 5.48 -17.34 -0.10 1.81 16 21 N -0.78 -19.22 13.93 55.55 0.77 -18.45 16 22 Si 0.92 19.70 24.37 -169.99 -4.14 15.56 16 23 H -0.26 -5.47 6.71 56.52 0.38 -5.09 16 24 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.24 -5.34 6.53 56.52 0.37 -4.97 16 26 C -0.25 -5.83 6.92 -38.87 -0.27 -6.10 16 27 C 0.01 0.28 9.49 -39.66 -0.38 -0.09 16 28 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 29 H 0.06 0.53 4.93 -51.93 -0.26 0.28 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 33 H 0.09 1.22 7.02 -51.93 -0.36 0.86 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.71 7.87 -51.92 -0.41 0.31 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 40 H 0.09 1.43 5.17 -51.92 -0.27 1.16 16 41 H 0.11 2.02 7.60 -52.48 -0.40 1.62 16 42 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 44 H 0.11 2.36 4.24 -52.49 -0.22 2.13 16 45 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -29.53 361.03 -9.49 -39.01 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.41 Total: 5.36 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: -2.17 Total: -35.03 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.49 Total: -32.53 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.14 Total: -46.06 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.14 Total: 15.56 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -0.56 Total: 48.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.53 -9.49 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645586353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.573 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds