Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47219 * 2 1 4 4 C 1.46500 * 119.99994 * 272.75855 * 3 2 1 5 5 C 1.52991 * 109.47450 * 65.86715 * 4 3 2 6 6 H 1.09004 * 110.43812 * 299.07453 * 5 4 3 7 7 C 1.54804 * 110.49211 * 176.38291 * 5 4 3 8 8 C 1.54997 * 102.09388 * 220.44414 * 7 5 4 9 9 O 1.44373 * 103.48930 * 37.02058 * 8 7 5 10 10 C 1.43739 * 106.97667 * 319.94073 * 9 8 7 11 11 S 1.65601 * 119.99655 * 92.75929 * 3 2 1 12 12 O 1.42094 * 106.40562 * 336.45875 * 11 3 2 13 13 O 1.42099 * 106.39854 * 203.53540 * 11 3 2 14 14 C 1.76200 * 107.21791 * 90.00175 * 11 3 2 15 15 C 1.38629 * 119.75491 * 89.99471 * 14 11 3 16 16 C 1.37621 * 120.25198 * 179.97438 * 15 14 11 17 17 C 1.40708 * 119.74339 * 0.02562 * 16 15 14 18 18 C 1.41401 * 120.24578 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99648 * 329.83344 * 18 17 16 20 20 C 1.39941 * 119.99848 * 149.83197 * 18 17 16 21 21 N 1.30823 * 119.99672 * 168.54556 * 20 18 17 22 22 Si 1.86797 * 120.00382 * 348.82206 * 20 18 17 23 23 H 1.48493 * 109.47380 * 93.03291 * 22 20 18 24 24 H 1.48505 * 109.46852 * 213.03148 * 22 20 18 25 25 H 1.48494 * 109.46970 * 333.02903 * 22 20 18 26 26 C 1.40716 * 119.51215 * 0.27004 * 17 16 15 27 27 C 1.37620 * 119.74444 * 359.42847 * 26 17 16 28 28 H 1.08999 * 109.46469 * 305.66824 * 1 2 3 29 29 H 1.09000 * 109.46699 * 65.66241 * 1 2 3 30 30 H 1.08997 * 109.47269 * 185.66799 * 1 2 3 31 31 H 1.09003 * 109.46927 * 240.00044 * 2 1 3 32 32 H 1.09002 * 109.46801 * 120.00301 * 2 1 3 33 33 H 1.09003 * 109.47012 * 185.87087 * 4 3 2 34 34 H 1.09005 * 109.46639 * 305.86388 * 4 3 2 35 35 H 1.09007 * 110.90718 * 338.64216 * 7 5 4 36 36 H 1.08997 * 110.90998 * 102.24206 * 7 5 4 37 37 H 1.09002 * 110.61567 * 278.51773 * 8 7 5 38 38 H 1.09002 * 110.61541 * 155.52083 * 8 7 5 39 39 H 1.09003 * 109.87916 * 267.08884 * 10 9 8 40 40 H 1.09008 * 110.00577 * 146.00970 * 10 9 8 41 41 H 1.08007 * 119.87168 * 0.02624 * 15 14 11 42 42 H 1.08002 * 120.12761 * 179.97438 * 16 15 14 43 43 H 0.96997 * 120.00213 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12889 * 179.70520 * 26 17 16 45 45 H 1.07996 * 119.87693 * 180.31214 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2050 2.0922 -1.2673 5 6 0.8468 2.3012 -1.9396 6 1 0.3760 1.3415 -2.1531 7 6 1.0063 3.1302 -3.2372 8 6 -0.2246 4.0701 -3.1755 9 8 -0.3431 4.3780 -1.7699 10 6 -0.0683 3.1647 -1.0499 11 16 2.3595 2.1388 1.4325 12 8 1.5971 1.4732 2.4299 13 8 2.2620 3.5340 1.1817 14 6 4.0519 1.8170 1.8027 15 6 5.0328 2.6837 1.3461 16 6 6.3577 2.4425 1.6297 17 6 6.7150 1.3108 2.3857 18 6 8.0730 1.0531 2.6837 19 1 8.8457 1.3700 1.9989 20 6 8.4158 0.3875 3.8660 21 7 9.6364 -0.0498 4.0401 22 14 7.1286 0.1165 5.1922 23 1 6.4905 -1.2104 4.9991 24 1 7.7762 0.1647 6.5277 25 1 6.0959 1.1799 5.1043 26 6 5.7114 0.4346 2.8386 27 6 4.3924 0.6990 2.5484 28 1 -0.3632 0.5992 0.8349 29 1 -0.3633 0.4235 -0.9364 30 1 -0.3633 -1.0226 0.1015 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6686 3.0600 -1.0760 34 1 2.8482 1.5043 -1.9223 35 1 1.9339 3.7025 -3.2216 36 1 0.9618 2.4882 -4.1169 37 1 -1.1176 3.5570 -3.5327 38 1 -0.0446 4.9767 -3.7532 39 1 -0.9990 2.6336 -0.8497 40 1 0.4365 3.3941 -0.1114 41 1 4.7561 3.5519 0.7663 42 1 7.1203 3.1188 1.2726 43 1 9.8742 -0.5108 4.8597 44 1 5.9749 -0.4395 3.4155 45 1 3.6200 0.0306 2.8992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645586353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -125.069162 kcal Electronic energy + Delta-G solvation = -28389.429218 eV Core-core repulsion = 24497.556146 eV Total energy + Delta-G solvation = -3891.873072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.57054 -39.68532 -38.29070 -37.78033 -36.83324 -35.80515 -33.54695 -32.69797 -31.73087 -31.34526 -30.05883 -27.54743 -26.37408 -24.04075 -23.70327 -23.14650 -22.83324 -21.38564 -20.01293 -19.57669 -19.00828 -18.43895 -17.51534 -17.30409 -17.03492 -16.84795 -16.06078 -15.91815 -15.88040 -15.42597 -15.17679 -14.91569 -14.65017 -14.55988 -14.28870 -14.03490 -13.97831 -13.83765 -13.58685 -13.16126 -13.07713 -13.01649 -13.00658 -12.80804 -12.63873 -12.54475 -12.41108 -12.22724 -12.21272 -11.88703 -11.74274 -11.71383 -11.47472 -11.30157 -11.15354 -10.59965 -10.04422 -9.90411 -9.72210 -9.12958 -6.82744 -0.44858 0.23424 0.74625 1.17641 1.31494 1.39797 1.98255 2.05475 2.38809 2.82776 3.08108 3.25603 3.39418 3.57264 3.77066 3.90384 4.02224 4.08567 4.13113 4.26895 4.33397 4.37125 4.43924 4.47147 4.50587 4.65242 4.75402 4.76462 4.79070 4.80216 4.88023 4.92930 4.96309 5.03200 5.09279 5.09741 5.25825 5.28487 5.31892 5.40412 5.45511 5.47868 5.69644 5.75999 5.99184 6.00423 6.15831 6.47445 6.57129 7.92346 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.003285 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.789243 B = 8521.103341 C = 8942.711911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 N -0.993 5.993 4 C 0.123 3.877 5 C -0.132 4.132 6 H 0.117 0.883 7 C -0.144 4.144 8 C 0.036 3.964 9 O -0.409 6.409 10 C 0.038 3.962 11 S 2.707 3.293 12 O -0.994 6.994 13 O -0.991 6.991 14 C -0.792 4.792 15 C 0.004 3.996 16 C -0.234 4.234 17 C 0.105 3.895 18 C -0.451 4.451 19 H 0.074 0.926 20 C 0.052 3.948 21 N -0.820 5.820 22 Si 0.958 3.042 23 H -0.249 1.249 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.267 4.267 27 C 0.007 3.993 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.303 0.697 44 H 0.109 0.891 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -1.399 -13.415 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.012 4.012 3 N -0.831 5.831 4 C -0.002 4.002 5 C -0.152 4.152 6 H 0.135 0.865 7 C -0.182 4.182 8 C -0.040 4.040 9 O -0.328 6.328 10 C -0.039 4.039 11 S 2.803 3.197 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.883 4.883 15 C -0.016 4.016 16 C -0.254 4.254 17 C 0.101 3.899 18 C -0.478 4.478 19 H 0.092 0.908 20 C -0.167 4.167 21 N -0.443 5.443 22 Si 0.782 3.218 23 H -0.174 1.174 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.287 4.287 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.648 -0.849 -12.706 20.960 hybrid contribution 1.040 -0.484 0.816 1.408 sum -15.607 -1.333 -11.890 19.666 Atomic orbital electron populations 1.22449 0.95369 1.03426 1.02440 1.21464 0.95018 0.80212 1.04493 1.57492 1.80225 1.24598 1.20813 1.21596 0.97081 0.97274 0.84271 1.23058 0.96106 1.00868 0.95169 0.86517 1.23203 0.99253 0.98274 0.97447 1.23822 0.97915 1.00355 0.81890 1.88867 1.91857 1.32791 1.19319 1.23420 0.98686 0.85706 0.96112 1.01012 0.73509 0.72538 0.72662 1.93467 1.70048 1.76378 1.58547 1.93486 1.87298 1.31950 1.85379 1.30001 1.23151 1.10464 1.24721 1.20549 0.92268 0.95420 0.93318 1.21280 0.95964 0.99262 1.08905 1.18107 0.92806 0.89928 0.89016 1.19810 0.92605 1.30129 1.05259 0.90752 1.26864 0.97958 0.90725 1.01168 1.69629 1.20887 1.25754 1.28042 0.85605 0.78642 0.81124 0.76476 1.17444 1.19848 1.17975 1.21212 0.93838 1.02175 1.11442 1.20512 0.95901 0.93466 0.91415 0.94190 0.90436 0.89661 0.87185 0.91002 0.90377 0.87809 0.90270 0.86959 0.90701 0.87993 0.91712 0.92177 0.84958 0.86481 0.88596 0.87352 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.62 71.98 0.69 -2.39 16 2 C 0.11 2.21 5.84 86.38 0.50 2.71 16 3 N -0.99 -24.68 2.48 -515.77 -1.28 -25.96 16 4 C 0.12 2.50 4.95 86.38 0.43 2.92 16 5 C -0.13 -2.23 2.45 -9.81 -0.02 -2.25 16 6 H 0.12 1.41 5.81 -2.39 -0.01 1.39 16 7 C -0.14 -1.89 6.71 31.89 0.21 -1.68 16 8 C 0.04 0.58 7.72 72.67 0.56 1.14 16 9 O -0.41 -10.73 11.52 -148.98 -1.72 -12.44 16 10 C 0.04 0.91 6.72 72.35 0.49 1.40 16 11 S 2.71 94.49 5.23 -56.49 -0.30 94.20 16 12 O -0.99 -38.39 16.08 -128.00 -2.06 -40.45 16 13 O -0.99 -38.38 14.17 -128.00 -1.81 -40.20 16 14 C -0.79 -31.65 6.00 22.46 0.13 -31.51 16 15 C 0.00 0.16 9.49 22.22 0.21 0.38 16 16 C -0.23 -10.48 9.80 22.73 0.22 -10.26 16 17 C 0.11 5.14 5.17 -21.29 -0.11 5.03 16 18 C -0.45 -23.53 9.62 23.46 0.23 -23.30 16 19 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 20 C 0.05 2.60 5.48 85.26 0.47 3.06 16 21 N -0.82 -41.37 13.93 21.83 0.30 -41.07 16 22 Si 0.96 40.61 24.37 68.60 1.67 42.28 16 23 H -0.25 -9.84 6.71 99.48 0.67 -9.17 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.26 -11.50 6.53 99.48 0.65 -10.85 16 26 C -0.27 -12.29 6.92 22.73 0.16 -12.13 16 27 C 0.01 0.28 9.49 22.22 0.21 0.49 16 28 H 0.04 0.89 7.95 -2.39 -0.02 0.87 16 29 H 0.08 1.05 4.93 -2.39 -0.01 1.03 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 33 H 0.08 1.87 7.02 -2.39 -0.02 1.85 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.12 7.87 -2.38 -0.02 1.10 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.38 7.86 -2.39 -0.02 1.36 16 40 H 0.06 1.83 5.17 -2.38 -0.01 1.82 16 41 H 0.13 4.70 7.60 -2.91 -0.02 4.68 16 42 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.30 13.60 8.30 -92.71 -0.77 12.83 16 44 H 0.11 4.83 4.24 -2.91 -0.01 4.82 16 45 H 0.13 4.79 7.60 -2.91 -0.02 4.77 16 Total: -1.00 -65.99 361.03 0.10 -65.90 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.91 Total: 24.13 kcal Atomic # 6 Polarization: -70.77 SS G_CDS: 4.38 Total: -66.39 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.98 Total: -67.03 kcal Atomic # 8 Polarization: -87.50 SS G_CDS: -5.59 Total: -93.08 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.67 Total: 42.28 kcal Atomic # 16 Polarization: 94.49 SS G_CDS: -0.30 Total: 94.20 kcal Total: -65.99 0.10 -65.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645586353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.174 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds