Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47567 * 2 1 4 4 C 1.46497 * 120.00225 * 275.00224 * 3 2 1 5 5 C 1.53001 * 109.47231 * 295.03555 * 4 3 2 6 6 H 1.08997 * 110.45711 * 51.29428 * 5 4 3 7 7 C 1.54509 * 110.51179 * 173.89780 * 5 4 3 8 8 C 1.54475 * 104.06408 * 118.64558 * 7 5 4 9 9 O 1.44423 * 104.80482 * 23.97544 * 8 7 5 10 10 C 1.44641 * 105.36892 * 319.56934 * 9 8 7 11 11 S 1.65607 * 119.99744 * 95.00008 * 3 2 1 12 12 O 1.42098 * 106.40347 * 329.97114 * 11 3 2 13 13 O 1.42098 * 106.40066 * 197.04460 * 11 3 2 14 14 C 1.76207 * 107.21610 * 83.51093 * 11 3 2 15 15 C 1.38629 * 119.74858 * 96.46934 * 14 11 3 16 16 C 1.37620 * 120.24632 * 180.02562 * 15 14 11 17 17 C 1.40717 * 119.74558 * 0.02562 * 16 15 14 18 18 C 1.41397 * 120.24495 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99972 * 208.48696 * 18 17 16 20 20 C 1.39952 * 119.99929 * 28.76006 * 18 17 16 21 21 N 1.30820 * 119.99936 * 9.35470 * 20 18 17 22 22 Si 1.86795 * 119.99849 * 189.35624 * 20 18 17 23 23 H 1.48500 * 109.47405 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47278 * 120.00101 * 22 20 18 25 25 H 1.48505 * 109.46725 * 239.99883 * 22 20 18 26 26 C 1.40711 * 119.50978 * 0.24727 * 17 16 15 27 27 C 1.37616 * 119.74524 * 359.49206 * 26 17 16 28 28 H 1.08991 * 109.47784 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46981 * 300.00228 * 1 2 3 30 30 H 1.08999 * 109.47216 * 59.99317 * 1 2 3 31 31 H 1.09003 * 109.47246 * 240.00214 * 2 1 3 32 32 H 1.08999 * 109.47216 * 120.00683 * 2 1 3 33 33 H 1.09003 * 109.47130 * 55.03702 * 4 3 2 34 34 H 1.09004 * 109.47333 * 175.03742 * 4 3 2 35 35 H 1.08994 * 110.51336 * 237.29403 * 7 5 4 36 36 H 1.09003 * 110.51328 * 0.02562 * 7 5 4 37 37 H 1.08999 * 110.37463 * 142.81065 * 8 7 5 38 38 H 1.09000 * 110.37180 * 265.03635 * 8 7 5 39 39 H 1.08999 * 110.33972 * 281.58682 * 10 9 8 40 40 H 1.09005 * 110.50773 * 159.18080 * 10 9 8 41 41 H 1.07999 * 119.88117 * 0.04388 * 15 14 11 42 42 H 1.08001 * 120.12859 * 180.02562 * 16 15 14 43 43 H 0.96997 * 120.00232 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.12842 * 179.75311 * 26 17 16 45 45 H 1.08000 * 119.87567 * 180.27745 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2638 5 6 3.2332 1.4383 -2.1219 6 1 3.0398 0.3691 -2.2081 7 6 3.2948 2.0918 -3.5206 8 6 4.7278 2.6624 -3.6056 9 8 5.4961 1.8706 -2.6737 10 6 4.6360 1.6884 -1.5252 11 16 2.4123 2.1200 1.4288 12 8 1.5747 1.5449 2.4222 13 8 2.4552 3.5148 1.1606 14 6 4.0599 1.6392 1.8277 15 6 5.1187 2.4689 1.4928 16 6 6.4097 2.1033 1.7990 17 6 6.6526 0.8818 2.4541 18 6 7.9748 0.4954 2.7732 19 1 8.2313 -0.5518 2.8351 20 6 8.9496 1.4701 3.0146 21 7 8.6044 2.7270 3.1262 22 14 10.7438 0.9763 3.1772 23 1 10.8695 -0.4942 3.0125 24 1 11.5428 1.6622 2.1302 25 1 11.2454 1.3683 4.5189 26 6 5.5705 0.0450 2.7840 27 6 4.2874 0.4334 2.4729 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.2078 2.0965 -1.7972 34 1 2.4472 3.1396 -1.0596 35 1 3.1342 1.3453 -4.2984 36 1 2.5598 2.8927 -3.6007 37 1 5.1222 2.5489 -4.6153 38 1 4.7363 3.7120 -3.3115 39 1 4.6314 2.5873 -0.9088 40 1 4.9582 0.8273 -0.9395 41 1 4.9300 3.4059 0.9900 42 1 7.2331 2.7513 1.5376 43 1 9.2800 3.4025 3.2939 44 1 5.7458 -0.8965 3.2832 45 1 3.4550 -0.2051 2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645586354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -111.278394 kcal Electronic energy + Delta-G solvation = -28906.546897 eV Core-core repulsion = 25015.271839 eV Total energy + Delta-G solvation = -3891.275059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.42224 -37.59607 -36.69939 -36.56583 -35.16352 -34.00187 -32.68032 -30.35647 -30.20364 -29.51297 -28.67923 -25.86722 -25.30185 -23.08463 -22.29058 -21.47516 -21.17403 -20.05358 -18.48564 -17.64541 -17.35209 -16.63404 -16.38342 -15.92103 -15.47990 -15.31312 -14.99768 -14.41516 -14.21553 -14.01500 -13.60968 -13.40051 -13.27641 -13.01218 -12.75066 -12.46269 -12.34559 -12.23465 -12.11069 -11.81300 -11.57252 -11.48513 -11.45652 -11.31842 -11.22476 -11.21596 -11.13315 -10.94619 -10.84573 -10.80553 -10.40726 -10.32550 -9.76963 -9.67287 -9.56459 -9.47426 -8.76652 -7.90248 -7.69327 -7.05187 -4.79948 1.14168 2.23440 2.89072 2.91033 2.92986 2.97422 3.52524 3.70117 4.12295 4.28801 4.46628 4.61427 4.70753 4.93708 4.97519 4.99555 5.16917 5.30158 5.34790 5.36281 5.43744 5.50091 5.55370 5.65666 5.74823 5.79248 5.85485 5.86138 5.95149 6.01241 6.08732 6.18060 6.23981 6.29311 6.39988 6.65130 6.71635 6.82324 6.96916 6.98582 7.04431 7.34718 7.40230 7.63607 7.78719 7.98632 8.34562 8.53521 8.65031 9.84661 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.004409 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.706622 B = 6349.731216 C = 7680.286622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -1.003 6.003 4 C 0.127 3.873 5 C -0.140 4.140 6 H 0.088 0.912 7 C -0.148 4.148 8 C 0.042 3.958 9 O -0.374 6.374 10 C 0.049 3.951 11 S 2.685 3.315 12 O -0.980 6.980 13 O -0.982 6.982 14 C -0.784 4.784 15 C -0.017 4.017 16 C -0.172 4.172 17 C 0.140 3.860 18 C -0.436 4.436 19 H 0.086 0.914 20 C 0.070 3.930 21 N -0.774 5.774 22 Si 0.919 3.081 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.271 1.271 26 C -0.234 4.234 27 C -0.001 4.001 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.288 0.712 44 H 0.100 0.900 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -2.424 -10.810 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.002 3.998 5 C -0.160 4.160 6 H 0.106 0.894 7 C -0.187 4.187 8 C -0.036 4.036 9 O -0.292 6.292 10 C -0.028 4.028 11 S 2.785 3.215 12 O -0.970 6.970 13 O -0.973 6.973 14 C -0.880 4.880 15 C -0.037 4.037 16 C -0.192 4.192 17 C 0.137 3.863 18 C -0.464 4.464 19 H 0.104 0.896 20 C -0.151 4.151 21 N -0.397 5.397 22 Si 0.743 3.257 23 H -0.181 1.181 24 H -0.193 1.193 25 H -0.196 1.196 26 C -0.255 4.255 27 C -0.021 4.021 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.450 -1.704 -10.325 13.450 hybrid contribution 1.257 -0.418 0.104 1.328 sum -7.193 -2.121 -10.220 12.677 Atomic orbital electron populations 1.22212 0.96333 1.02018 1.02552 1.21121 0.94101 0.81966 1.03071 1.57814 1.80503 1.23420 1.22010 1.21364 0.98095 0.96133 0.84237 1.22978 0.96738 1.01633 0.94667 0.89407 1.22946 0.98093 1.00778 0.96838 1.23386 0.90430 0.95361 0.94387 1.89183 1.38866 1.72509 1.28684 1.23769 0.87653 1.02785 0.88571 1.01561 0.75025 0.72869 0.72014 1.93485 1.67305 1.79224 1.56994 1.93463 1.88415 1.30630 1.84801 1.29194 1.19496 1.09485 1.29790 1.20243 0.92658 0.95507 0.95327 1.21427 0.95286 0.99528 1.02990 1.17879 0.92502 0.90852 0.85100 1.19958 0.93325 0.94815 1.38277 0.89558 1.26113 1.02255 0.94382 0.92379 1.69789 1.36698 1.01831 1.31400 0.86061 0.80344 0.80400 0.78901 1.18100 1.19310 1.19567 1.21054 0.92342 1.02198 1.09873 1.20103 0.96445 0.92669 0.92870 0.91848 0.91684 0.92671 0.90710 0.90181 0.90967 0.88495 0.90711 0.90344 0.89540 0.92329 0.91511 0.88248 0.87942 0.85630 0.90117 0.88229 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.15 0.38 -1.51 16 2 C 0.12 1.51 5.95 -4.05 -0.02 1.48 16 3 N -1.00 -14.51 2.80 -114.39 -0.32 -14.83 16 4 C 0.13 1.59 5.03 -4.04 -0.02 1.57 16 5 C -0.14 -1.69 3.16 -89.05 -0.28 -1.97 16 6 H 0.09 0.99 6.67 -51.93 -0.35 0.64 16 7 C -0.15 -1.47 6.74 -25.16 -0.17 -1.64 16 8 C 0.04 0.49 7.64 37.93 0.29 0.78 16 9 O -0.37 -6.05 11.65 -35.23 -0.41 -6.47 16 10 C 0.05 0.76 6.51 37.93 0.25 1.01 16 11 S 2.69 51.04 5.60 -107.50 -0.60 50.44 16 12 O -0.98 -20.45 16.47 -57.17 -0.94 -21.39 16 13 O -0.98 -20.53 15.49 -57.17 -0.89 -21.42 16 14 C -0.78 -16.64 5.99 -39.29 -0.24 -16.88 16 15 C -0.02 -0.38 7.49 -39.66 -0.30 -0.68 16 16 C -0.17 -4.23 8.66 -38.87 -0.34 -4.57 16 17 C 0.14 3.50 5.56 -106.83 -0.59 2.91 16 18 C -0.44 -10.67 9.07 -37.74 -0.34 -11.01 16 19 H 0.09 2.00 7.86 -52.49 -0.41 1.59 16 20 C 0.07 1.62 5.28 -17.34 -0.09 1.53 16 21 N -0.77 -18.75 10.77 55.55 0.60 -18.15 16 22 Si 0.92 17.33 29.57 -169.99 -5.03 12.31 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 27 C 0.00 -0.02 9.49 -39.66 -0.38 -0.39 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.76 6.60 -51.93 -0.34 0.41 16 32 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.32 6.49 -51.93 -0.34 0.98 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.13 5.62 -51.93 -0.29 0.84 16 40 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.10 2.19 6.89 -52.49 -0.36 1.83 16 42 H 0.13 3.20 6.17 -52.49 -0.32 2.88 16 43 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 44 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 45 H 0.10 1.91 7.76 -52.49 -0.41 1.50 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -29.52 371.15 -10.79 -40.31 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.56 Total: 8.73 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -2.23 Total: -35.14 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.28 Total: -32.97 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -2.24 Total: -49.27 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -0.60 Total: 50.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.52 -10.79 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645586354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.969 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds