Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47152 * 2 1 4 4 N 1.46897 * 109.47059 * 240.00268 * 2 1 3 5 5 C 1.46891 * 111.00314 * 84.99625 * 4 2 1 6 6 C 1.50700 * 109.47409 * 179.97438 * 5 4 2 7 7 C 1.38329 * 119.96448 * 89.99981 * 6 5 4 8 8 C 1.38278 * 120.14060 * 180.02562 * 7 6 5 9 9 C 1.38122 * 120.06752 * 359.97081 * 8 7 6 10 10 C 1.38854 * 119.93193 * 0.03039 * 9 8 7 11 11 O 1.35753 * 120.06914 * 179.97438 * 10 9 8 12 12 C 1.34824 * 117.00071 * 354.46704 * 11 10 9 13 13 H 1.07998 * 120.00184 * 5.05216 * 12 11 10 14 14 C 1.38659 * 120.00177 * 185.04969 * 12 11 10 15 15 N 1.31556 * 120.00239 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99836 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47360 * 89.99326 * 16 14 12 18 18 H 1.48494 * 109.46855 * 209.99765 * 16 14 12 19 19 H 1.48507 * 109.46756 * 329.99473 * 16 14 12 20 20 C 1.38075 * 119.97084 * 269.73111 * 6 5 4 21 21 C 1.53000 * 109.47483 * 120.00027 * 2 1 3 22 22 H 1.09004 * 110.01158 * 179.30328 * 21 2 1 23 23 C 1.53870 * 110.02616 * 57.91532 * 21 2 1 24 24 C 1.54194 * 108.69056 * 193.57224 * 23 21 2 25 25 S 1.82922 * 105.10882 * 27.84108 * 24 23 21 26 26 O 1.42101 * 109.35431 * 244.51697 * 25 24 23 27 27 O 1.42100 * 109.35438 * 111.30776 * 25 24 23 28 28 C 1.55049 * 110.02683 * 300.67723 * 21 2 1 29 29 H 1.09006 * 109.46998 * 300.00115 * 1 2 3 30 30 H 1.09000 * 109.47608 * 60.00133 * 1 2 3 31 31 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.00899 * 110.99903 * 321.04115 * 4 2 1 33 33 H 1.09004 * 109.47562 * 300.00243 * 5 4 2 34 34 H 1.09006 * 109.47269 * 60.00237 * 5 4 2 35 35 H 1.08002 * 119.92887 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.96527 * 180.02562 * 8 7 6 37 37 H 1.08003 * 120.03155 * 180.02562 * 9 8 7 38 38 H 0.96993 * 119.99747 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.02944 * 359.97438 * 20 6 5 40 40 H 1.08992 * 109.65014 * 313.38142 * 23 21 2 41 41 H 1.09003 * 109.64531 * 73.68093 * 23 21 2 42 42 H 1.08993 * 110.28106 * 268.94821 * 24 23 21 43 43 H 1.08996 * 110.42442 * 146.80876 * 24 23 21 44 44 H 1.09006 * 110.79381 * 279.99611 * 28 21 2 45 45 H 1.08999 * 110.78944 * 43.26356 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0823 0.2226 -2.3469 6 6 2.5884 -0.5215 -3.5557 7 6 1.6950 -1.1525 -4.4026 8 6 2.1554 -1.8367 -5.5126 9 6 3.5095 -1.8915 -5.7793 10 6 4.4088 -1.2591 -4.9311 11 8 5.7404 -1.3117 -5.1903 12 6 6.1333 -2.0880 -6.2201 13 1 5.3961 -2.5678 -6.8467 14 6 7.4841 -2.2705 -6.4748 15 7 7.8675 -3.0285 -7.4793 16 14 8.7593 -1.4412 -5.3905 17 1 9.1055 -2.3381 -4.2588 18 1 9.9790 -1.1582 -6.1889 19 1 8.2070 -0.1680 -4.8621 20 6 3.9428 -0.5680 -3.8200 21 6 2.0400 -0.7212 1.2492 22 1 3.1300 -0.7371 1.2518 23 6 1.4918 -2.1584 1.2887 24 6 1.7301 -2.7397 2.6969 25 16 1.7387 -1.2921 3.8151 26 8 3.0274 -1.1547 4.3978 27 8 0.5851 -1.3304 4.6439 28 6 1.5164 -0.0104 2.5238 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 -1.4100 33 1 1.0869 0.6163 -2.5525 34 1 2.7588 1.0462 -2.1182 35 1 0.6357 -1.1106 -4.1964 36 1 1.4553 -2.3279 -6.1721 37 1 3.8684 -2.4257 -6.6466 38 1 8.8124 -3.1564 -7.6572 39 1 4.6394 -0.0712 -3.1610 40 1 0.4235 -2.1492 1.0727 41 1 2.0083 -2.7682 0.5475 42 1 2.6905 -3.2536 2.7358 43 1 0.9249 -3.4224 2.9678 44 1 2.1149 0.8726 2.7480 45 1 0.4647 0.2546 2.4145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646357041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -71.746642 kcal Electronic energy + Delta-G solvation = -26698.330553 eV Core-core repulsion = 22808.769720 eV Total energy + Delta-G solvation = -3889.560834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -39.45975 -38.89271 -37.36288 -36.96071 -36.33408 -34.96854 -32.42316 -31.86603 -30.30748 -29.41397 -28.51253 -26.19059 -25.33509 -24.39506 -23.35145 -21.80519 -20.56619 -19.86200 -19.17583 -17.80487 -17.40409 -17.10873 -16.88497 -15.94348 -15.73904 -15.25590 -15.24815 -15.08387 -14.81835 -14.57803 -14.36395 -13.95505 -13.81333 -13.42479 -13.32005 -13.01696 -12.67311 -12.59087 -12.51704 -12.38839 -12.35480 -12.22953 -12.08654 -11.98921 -11.69508 -11.58648 -11.34229 -11.11048 -10.90169 -10.81477 -10.79185 -10.70168 -10.52337 -10.16702 -9.42259 -8.90412 -8.59544 -8.20978 -7.42374 -6.43798 -4.10810 -0.30268 1.96446 2.16935 2.21016 3.20934 3.22104 3.25150 3.39256 3.58442 3.84716 4.04352 4.17376 4.22145 4.33569 4.40431 4.54002 4.60632 4.68176 4.73020 4.78833 4.91879 5.05259 5.07519 5.18141 5.21689 5.28750 5.34356 5.46560 5.51169 5.55837 5.61002 5.68811 5.74839 5.76233 5.88399 6.07349 6.22110 6.48173 6.73564 6.83994 7.06892 7.11874 7.26281 7.28103 7.55903 7.77149 8.01138 8.91540 9.53770 10.63832 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002369 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.228644 B =11818.716203 C =13064.564382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.098 3.902 3 H 0.087 0.913 4 N -0.677 5.677 5 C 0.107 3.893 6 C -0.051 4.051 7 C -0.200 4.200 8 C -0.077 4.077 9 C -0.219 4.219 10 C 0.158 3.842 11 O -0.217 6.217 12 C -0.390 4.390 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.166 4.166 21 C -0.077 4.077 22 H 0.106 0.894 23 C -0.116 4.116 24 C -0.589 4.589 25 S 2.384 3.616 26 O -0.938 6.938 27 O -0.945 6.945 28 C -0.590 4.590 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.345 0.655 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.280 0.720 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 4.728 17.439 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.013 4.013 3 H 0.105 0.895 4 N -0.308 5.308 5 C -0.021 4.021 6 C -0.052 4.052 7 C -0.219 4.219 8 C -0.095 4.095 9 C -0.239 4.239 10 C 0.106 3.894 11 O -0.122 6.122 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.186 4.186 21 C -0.097 4.097 22 H 0.124 0.876 23 C -0.154 4.154 24 C -0.719 4.719 25 S 2.569 3.431 26 O -0.935 6.935 27 O -0.942 6.942 28 C -0.720 4.720 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.213 4.892 18.591 24.516 hybrid contribution -0.454 0.104 -0.925 1.036 sum -15.667 4.996 17.666 24.135 Atomic orbital electron populations 1.22724 0.97291 1.02723 1.02693 1.21375 0.92521 0.98059 0.89364 0.89496 1.60532 1.57370 1.09741 1.03177 1.20830 0.99075 0.94326 0.87906 1.19128 0.92670 0.98382 0.95029 1.20475 0.97853 1.05324 0.98269 1.20747 0.94843 0.97518 0.96410 1.21309 0.93092 1.06518 1.02931 1.19102 0.84060 0.93511 0.92776 1.83574 1.18516 1.61135 1.48982 1.20755 0.93824 1.26187 1.05768 0.87675 1.24467 0.96949 0.95996 0.96570 1.69643 1.17573 1.36465 1.28083 0.86179 0.79763 0.80893 0.80058 1.19829 1.20815 1.18347 1.20015 0.94653 1.05979 0.97953 1.21863 1.02440 0.92946 0.92425 0.87618 1.22091 1.03499 0.95253 0.94598 1.30475 1.11793 1.18057 1.11610 1.09154 0.75267 0.80496 0.78197 1.93633 1.39857 1.85061 1.74996 1.93607 1.50460 1.85696 1.64419 1.30831 1.11265 1.15733 1.14192 0.91603 0.92063 0.91643 0.83577 0.94547 0.90395 0.87925 0.87307 0.85051 0.91035 0.86502 0.89665 0.87910 0.84413 0.84574 0.84266 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.09 8.52 37.16 0.32 -0.77 16 2 C 0.10 0.68 2.47 -67.72 -0.17 0.51 16 3 H 0.09 0.61 7.80 -51.92 -0.40 0.20 16 4 N -0.68 -6.44 5.97 -108.00 -0.64 -7.08 16 5 C 0.11 1.20 5.61 -4.98 -0.03 1.17 16 6 C -0.05 -0.79 5.39 -104.65 -0.56 -1.35 16 7 C -0.20 -3.02 9.70 -39.53 -0.38 -3.41 16 8 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 9 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 10 C 0.16 3.52 6.65 -39.11 -0.26 3.26 16 11 O -0.22 -5.62 8.59 0.06 0.00 -5.62 16 12 C -0.39 -10.83 9.95 30.89 0.31 -10.52 16 13 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 14 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 15 N -0.88 -25.18 13.96 55.48 0.77 -24.41 16 16 Si 0.91 21.48 28.62 -169.99 -4.86 16.62 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.17 -3.13 9.64 -39.39 -0.38 -3.51 16 21 C -0.08 -0.47 2.65 -89.08 -0.24 -0.70 16 22 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.12 -0.63 5.14 -25.65 -0.13 -0.76 16 24 C -0.59 -3.02 7.26 37.78 0.27 -2.75 16 25 S 2.38 16.97 6.11 -107.50 -0.66 16.31 16 26 O -0.94 -10.53 18.15 -57.71 -1.05 -11.58 16 27 O -0.94 -9.93 18.15 -57.71 -1.05 -10.98 16 28 C -0.59 -2.91 6.56 38.24 0.25 -2.66 16 29 H 0.07 0.29 6.16 -51.93 -0.32 -0.03 16 30 H 0.06 0.37 7.45 -51.93 -0.39 -0.01 16 31 H 0.06 0.32 6.15 -51.93 -0.32 0.00 16 32 H 0.35 3.11 8.20 -39.29 -0.32 2.79 16 33 H 0.04 0.36 7.38 -51.93 -0.38 -0.02 16 34 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 35 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.90 5.64 -52.48 -0.30 2.61 16 38 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.08 0.35 5.84 -51.93 -0.30 0.05 16 41 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.14 0.49 5.92 -51.93 -0.31 0.19 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -34.75 372.21 -9.99 -44.74 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.26 Total: 2.85 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -1.86 Total: -26.46 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.13 Total: -31.49 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -2.09 Total: -28.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.62 kcal Atomic # 16 Polarization: 16.97 SS G_CDS: -0.66 Total: 16.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.75 -9.99 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.008 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds