Wall clock time and date at job start Sat Apr 11 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47152 * 2 1 4 4 N 1.46897 * 109.47059 * 240.00268 * 2 1 3 5 5 C 1.46891 * 111.00314 * 84.99625 * 4 2 1 6 6 C 1.50700 * 109.47409 * 179.97438 * 5 4 2 7 7 C 1.38329 * 119.96448 * 89.99981 * 6 5 4 8 8 C 1.38278 * 120.14060 * 180.02562 * 7 6 5 9 9 C 1.38122 * 120.06752 * 359.97081 * 8 7 6 10 10 C 1.38854 * 119.93193 * 0.03039 * 9 8 7 11 11 O 1.35753 * 120.06914 * 179.97438 * 10 9 8 12 12 C 1.34824 * 117.00071 * 354.46704 * 11 10 9 13 13 H 1.07998 * 120.00184 * 5.05216 * 12 11 10 14 14 C 1.38659 * 120.00177 * 185.04969 * 12 11 10 15 15 N 1.31556 * 120.00239 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99836 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47360 * 89.99326 * 16 14 12 18 18 H 1.48494 * 109.46855 * 209.99765 * 16 14 12 19 19 H 1.48507 * 109.46756 * 329.99473 * 16 14 12 20 20 C 1.38075 * 119.97084 * 269.73111 * 6 5 4 21 21 C 1.53000 * 109.47483 * 120.00027 * 2 1 3 22 22 H 1.09004 * 110.01158 * 179.30328 * 21 2 1 23 23 C 1.53870 * 110.02616 * 57.91532 * 21 2 1 24 24 C 1.54194 * 108.69056 * 193.57224 * 23 21 2 25 25 S 1.82922 * 105.10882 * 27.84108 * 24 23 21 26 26 O 1.42101 * 109.35431 * 244.51697 * 25 24 23 27 27 O 1.42100 * 109.35438 * 111.30776 * 25 24 23 28 28 C 1.55049 * 110.02683 * 300.67723 * 21 2 1 29 29 H 1.09006 * 109.46998 * 300.00115 * 1 2 3 30 30 H 1.09000 * 109.47608 * 60.00133 * 1 2 3 31 31 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.00899 * 110.99903 * 321.04115 * 4 2 1 33 33 H 1.09004 * 109.47562 * 300.00243 * 5 4 2 34 34 H 1.09006 * 109.47269 * 60.00237 * 5 4 2 35 35 H 1.08002 * 119.92887 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.96527 * 180.02562 * 8 7 6 37 37 H 1.08003 * 120.03155 * 180.02562 * 9 8 7 38 38 H 0.96993 * 119.99747 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.02944 * 359.97438 * 20 6 5 40 40 H 1.08992 * 109.65014 * 313.38142 * 23 21 2 41 41 H 1.09003 * 109.64531 * 73.68093 * 23 21 2 42 42 H 1.08993 * 110.28106 * 268.94821 * 24 23 21 43 43 H 1.08996 * 110.42442 * 146.80876 * 24 23 21 44 44 H 1.09006 * 110.79381 * 279.99611 * 28 21 2 45 45 H 1.08999 * 110.78944 * 43.26356 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0823 0.2226 -2.3469 6 6 2.5884 -0.5215 -3.5557 7 6 1.6950 -1.1525 -4.4026 8 6 2.1554 -1.8367 -5.5126 9 6 3.5095 -1.8915 -5.7793 10 6 4.4088 -1.2591 -4.9311 11 8 5.7404 -1.3117 -5.1903 12 6 6.1333 -2.0880 -6.2201 13 1 5.3961 -2.5678 -6.8467 14 6 7.4841 -2.2705 -6.4748 15 7 7.8675 -3.0285 -7.4793 16 14 8.7593 -1.4412 -5.3905 17 1 9.1055 -2.3381 -4.2588 18 1 9.9790 -1.1582 -6.1889 19 1 8.2070 -0.1680 -4.8621 20 6 3.9428 -0.5680 -3.8200 21 6 2.0400 -0.7212 1.2492 22 1 3.1300 -0.7371 1.2518 23 6 1.4918 -2.1584 1.2887 24 6 1.7301 -2.7397 2.6969 25 16 1.7387 -1.2921 3.8151 26 8 3.0274 -1.1547 4.3978 27 8 0.5851 -1.3304 4.6439 28 6 1.5164 -0.0104 2.5238 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 -1.4100 33 1 1.0869 0.6163 -2.5525 34 1 2.7588 1.0462 -2.1182 35 1 0.6357 -1.1106 -4.1964 36 1 1.4553 -2.3279 -6.1721 37 1 3.8684 -2.4257 -6.6466 38 1 8.8124 -3.1564 -7.6572 39 1 4.6394 -0.0712 -3.1610 40 1 0.4235 -2.1492 1.0727 41 1 2.0083 -2.7682 0.5475 42 1 2.6905 -3.2536 2.7358 43 1 0.9249 -3.4224 2.9678 44 1 2.1149 0.8726 2.7480 45 1 0.4647 0.2546 2.4145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646357041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:53 Heat of formation + Delta-G solvation = -97.780003 kcal Electronic energy + Delta-G solvation = -26699.459444 eV Core-core repulsion = 22808.769720 eV Total energy + Delta-G solvation = -3890.689725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90144 -39.66572 -38.40949 -38.04915 -37.03063 -35.77868 -34.44047 -32.76085 -31.27023 -30.69953 -29.23181 -27.30884 -26.71264 -25.31615 -23.89935 -23.25093 -22.06073 -20.39638 -19.76515 -19.63724 -18.86937 -17.76513 -17.53180 -16.86996 -16.65179 -16.54956 -16.36141 -15.97299 -15.72831 -15.57639 -15.34791 -15.11907 -15.05470 -14.64317 -14.37912 -14.10760 -13.94750 -13.78363 -13.36889 -13.26772 -13.08295 -13.07066 -12.95311 -12.85158 -12.56297 -12.44587 -12.38941 -12.34008 -12.12572 -12.11518 -11.87703 -11.57982 -11.28333 -11.21267 -11.08900 -10.90147 -9.67783 -9.25337 -9.01480 -8.49321 -6.21629 -0.83594 0.53415 0.72784 1.31739 1.35826 1.52090 1.66892 2.28481 2.68306 2.76968 2.97940 3.09121 3.18138 3.37502 3.58097 3.72093 3.89849 4.00943 4.05612 4.09569 4.14508 4.25268 4.32773 4.38451 4.46231 4.53205 4.60484 4.66894 4.72663 4.78541 4.84273 4.90488 5.04440 5.05516 5.12725 5.16799 5.26416 5.29010 5.42134 5.49586 5.70877 5.76987 5.81557 5.94165 6.13931 6.30019 6.58246 6.85641 7.61736 8.62459 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.002369 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.228644 B =11818.716203 C =13064.564382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.100 3.900 3 H 0.088 0.912 4 N -0.689 5.689 5 C 0.112 3.888 6 C -0.038 4.038 7 C -0.172 4.172 8 C -0.077 4.077 9 C -0.241 4.241 10 C 0.117 3.883 11 O -0.248 6.248 12 C -0.397 4.397 13 H 0.080 0.920 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.263 1.263 20 C -0.171 4.171 21 C -0.080 4.080 22 H 0.095 0.905 23 C -0.118 4.118 24 C -0.574 4.574 25 S 2.382 3.618 26 O -0.989 6.989 27 O -0.984 6.984 28 C -0.569 4.569 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.350 0.650 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.284 0.716 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 6.013 19.078 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.010 4.010 3 H 0.107 0.893 4 N -0.321 5.321 5 C -0.016 4.016 6 C -0.039 4.039 7 C -0.191 4.191 8 C -0.095 4.095 9 C -0.261 4.261 10 C 0.068 3.932 11 O -0.156 6.156 12 C -0.473 4.473 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.193 1.193 19 H -0.187 1.187 20 C -0.191 4.191 21 C -0.101 4.101 22 H 0.113 0.887 23 C -0.156 4.156 24 C -0.706 4.706 25 S 2.573 3.427 26 O -0.986 6.986 27 O -0.981 6.981 28 C -0.701 4.701 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.350 6.183 20.289 28.046 hybrid contribution 0.125 -0.260 -1.379 1.409 sum -18.225 5.923 18.910 26.922 Atomic orbital electron populations 1.22728 0.95710 1.03604 1.03417 1.21392 0.93717 0.97812 0.88093 0.89339 1.60434 1.58477 1.09922 1.03259 1.20790 1.00243 0.93935 0.86632 1.19636 0.91044 0.96965 0.96223 1.21031 1.00135 1.01878 0.96024 1.21107 0.93350 0.97472 0.97610 1.21322 0.95078 1.07263 1.02405 1.19680 0.83171 0.95583 0.94766 1.83515 1.20641 1.62405 1.48999 1.20692 0.93815 1.26523 1.06306 0.90215 1.25265 0.98782 0.96846 0.97992 1.69727 1.18215 1.38645 1.30010 0.85226 0.77498 0.79571 0.78474 1.19140 1.19274 1.18740 1.20286 0.96590 1.05399 0.96792 1.21873 1.02042 0.93561 0.92598 0.88691 1.22164 1.04715 0.94598 0.94155 1.30350 1.12783 1.16919 1.10560 1.08939 0.73431 0.81597 0.78779 1.93566 1.41785 1.86170 1.77078 1.93552 1.51180 1.86625 1.66712 1.30688 1.12907 1.14793 1.11718 0.90225 0.92095 0.90701 0.83046 0.91872 0.90273 0.83257 0.84416 0.87874 0.90630 0.86294 0.87633 0.88374 0.84111 0.82818 0.83027 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.52 71.98 0.61 -0.53 16 2 C 0.10 0.95 2.47 44.91 0.11 1.06 16 3 H 0.09 0.85 7.80 -2.38 -0.02 0.83 16 4 N -0.69 -10.17 5.97 -495.59 -2.96 -13.13 16 5 C 0.11 2.00 5.61 85.56 0.48 2.48 16 6 C -0.04 -1.03 5.39 -19.88 -0.11 -1.14 16 7 C -0.17 -4.40 9.70 22.30 0.22 -4.18 16 8 C -0.08 -2.46 10.04 22.25 0.22 -2.24 16 9 C -0.24 -10.32 9.17 22.39 0.21 -10.11 16 10 C 0.12 5.36 6.65 22.58 0.15 5.51 16 11 O -0.25 -13.45 8.59 -22.71 -0.20 -13.65 16 12 C -0.40 -23.44 9.95 67.92 0.68 -22.76 16 13 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 14 C 0.01 0.54 5.49 84.83 0.47 1.00 16 15 N -0.92 -55.46 13.96 21.61 0.30 -55.15 16 16 Si 0.97 45.71 28.62 68.60 1.96 47.67 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 20 C -0.17 -6.27 9.64 22.39 0.22 -6.05 16 21 C -0.08 -0.72 2.65 -9.80 -0.03 -0.75 16 22 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 23 C -0.12 -0.88 5.14 31.29 0.16 -0.72 16 24 C -0.57 -4.59 7.26 72.39 0.53 -4.06 16 25 S 2.38 31.29 6.11 -56.49 -0.34 30.95 16 26 O -0.99 -22.41 18.15 -127.49 -2.31 -24.72 16 27 O -0.98 -19.90 18.15 -127.49 -2.31 -22.21 16 28 C -0.57 -3.89 6.56 72.68 0.48 -3.41 16 29 H 0.08 0.27 6.16 -2.38 -0.01 0.26 16 30 H 0.06 0.40 7.45 -2.39 -0.02 0.38 16 31 H 0.07 0.31 6.15 -2.39 -0.01 0.30 16 32 H 0.35 4.60 8.20 -89.69 -0.74 3.87 16 33 H 0.06 0.84 7.38 -2.38 -0.02 0.82 16 34 H 0.08 1.45 8.00 -2.38 -0.02 1.43 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.10 4.94 5.64 -2.91 -0.02 4.92 16 38 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.11 0.38 5.84 -2.39 -0.01 0.36 16 41 H 0.10 0.91 8.11 -2.39 -0.02 0.89 16 42 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.15 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.16 0.45 5.92 -2.39 -0.01 0.43 16 Total: -1.00 -80.92 372.21 -1.19 -82.10 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.28 Total: 14.04 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 4.39 Total: -45.90 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -2.66 Total: -68.28 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -4.82 Total: -60.58 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.96 Total: 47.67 kcal Atomic # 16 Polarization: 31.29 SS G_CDS: -0.34 Total: 30.95 kcal Total: -80.92 -1.19 -82.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.676 kcal (2) G-P(sol) polarization free energy of solvation -80.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds