Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47416 * 2 1 4 4 N 1.46905 * 109.46732 * 240.00067 * 2 1 3 5 5 C 1.46897 * 110.99886 * 85.00308 * 4 2 1 6 6 C 1.50708 * 109.46759 * 180.02562 * 5 4 2 7 7 C 1.38320 * 119.95916 * 269.71801 * 6 5 4 8 8 C 1.38289 * 120.13085 * 179.76535 * 7 6 5 9 9 C 1.38121 * 120.07143 * 0.51360 * 8 7 6 10 10 C 1.38864 * 119.92761 * 359.74520 * 9 8 7 11 11 O 1.35751 * 120.06616 * 179.97438 * 10 9 8 12 12 C 1.34832 * 116.99978 * 354.48747 * 11 10 9 13 13 H 1.08003 * 119.99996 * 5.05482 * 12 11 10 14 14 C 1.38650 * 119.99908 * 185.05986 * 12 11 10 15 15 N 1.31558 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47100 * 119.99928 * 16 14 12 19 19 H 1.48499 * 109.46786 * 239.99960 * 16 14 12 20 20 C 1.38077 * 119.96532 * 89.99859 * 6 5 4 21 21 C 1.52997 * 109.47474 * 120.00011 * 2 1 3 22 22 H 1.09004 * 110.01025 * 61.37567 * 21 2 1 23 23 C 1.54017 * 110.03465 * 182.71267 * 21 2 1 24 24 C 1.54158 * 108.63096 * 166.38375 * 23 21 2 25 25 S 1.82911 * 105.17872 * 332.22437 * 24 23 21 26 26 O 1.42101 * 109.35423 * 115.46959 * 25 24 23 27 27 O 1.42098 * 109.35874 * 248.67530 * 25 24 23 28 28 C 1.55051 * 110.02903 * 299.99964 * 21 2 1 29 29 H 1.09006 * 109.47563 * 59.99841 * 1 2 3 30 30 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47009 * 299.99903 * 1 2 3 32 32 H 1.00893 * 110.99726 * 321.04234 * 4 2 1 33 33 H 1.09003 * 109.46950 * 299.99197 * 5 4 2 34 34 H 1.08994 * 109.47563 * 60.00035 * 5 4 2 35 35 H 1.08000 * 119.93751 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.96047 * 180.25666 * 8 7 6 37 37 H 1.08000 * 120.03267 * 179.71667 * 9 8 7 38 38 H 0.97000 * 120.00307 * 179.97438 * 15 14 12 39 39 H 1.07994 * 120.03955 * 359.95210 * 20 6 5 40 40 H 1.09002 * 109.61384 * 46.59577 * 23 21 2 41 41 H 1.09001 * 109.75014 * 286.25908 * 23 21 2 42 42 H 1.09006 * 110.31843 * 213.26667 * 24 23 21 43 43 H 1.09006 * 110.31661 * 91.18246 * 24 23 21 44 44 H 1.09001 * 110.78960 * 80.00050 * 28 21 2 45 45 H 1.09002 * 110.78368 * 316.54716 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.5871 -0.5219 -3.5561 7 6 3.9438 -0.5693 -3.8215 8 6 4.4113 -1.2555 -4.9274 9 6 3.5234 -1.8869 -5.7763 10 6 2.1604 -1.8366 -5.5155 11 8 1.2853 -2.4557 -6.3483 12 6 1.7921 -3.0043 -7.4708 13 1 2.8597 -3.0112 -7.6341 14 6 0.9427 -3.5594 -8.4157 15 7 -0.3577 -3.5514 -8.2167 16 14 1.6448 -4.3188 -9.9714 17 1 3.1251 -4.2007 -9.9553 18 1 1.2628 -5.7522 -10.0385 19 1 1.1048 -3.6064 -11.1572 20 6 1.6944 -1.1510 -4.4010 21 6 2.0400 -0.7212 1.2492 22 1 1.7018 -1.7574 1.2459 23 6 3.5786 -0.6697 1.2969 24 6 4.0419 -1.0881 2.7065 25 16 2.6636 -0.6313 3.8188 26 8 2.1127 -1.8082 4.3940 27 8 3.0693 0.4442 4.6543 28 6 1.5304 -0.0004 2.5239 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4494 -1.4979 -1.4100 33 1 1.0869 0.6163 -2.5525 34 1 2.7587 1.0461 -2.1183 35 1 4.6398 -0.0729 -3.1614 36 1 5.4714 -1.2942 -5.1296 37 1 3.8888 -2.4188 -6.6423 38 1 -0.9520 -3.9394 -8.8779 39 1 0.6350 -1.1105 -4.1953 40 1 3.9174 0.3446 1.0859 41 1 3.9932 -1.3540 0.5566 42 1 4.9470 -0.5475 2.9834 43 1 4.2178 -2.1633 2.7434 44 1 0.4998 -0.2812 2.7412 45 1 1.6243 1.0806 2.4206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646357042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -78.985292 kcal Electronic energy + Delta-G solvation = -26547.110945 eV Core-core repulsion = 22657.236220 eV Total energy + Delta-G solvation = -3889.874725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -39.27434 -38.61587 -37.33424 -36.77297 -36.30681 -34.99180 -32.36313 -31.95341 -30.19038 -29.16767 -28.27937 -26.26153 -25.41378 -24.32934 -22.40158 -21.61177 -20.94523 -20.43812 -19.14553 -17.74029 -17.16775 -17.08315 -16.83839 -16.08095 -15.35007 -15.26838 -15.10413 -14.72449 -14.58202 -14.32464 -14.28502 -14.23797 -13.64449 -13.53969 -13.22349 -12.96896 -12.60042 -12.58371 -12.49294 -12.44011 -12.31831 -12.19764 -11.74825 -11.67062 -11.62602 -11.54589 -11.30763 -11.05376 -10.96690 -10.84704 -10.73095 -10.66226 -10.50924 -10.40406 -9.38237 -8.87999 -8.54107 -8.11838 -7.27230 -6.48288 -4.07620 -0.27179 2.04072 2.20190 2.34285 3.09512 3.11297 3.16695 3.25474 3.62667 3.88899 3.93530 4.08179 4.26340 4.42570 4.46302 4.59089 4.67493 4.79597 4.88928 5.02451 5.08074 5.13382 5.17635 5.21497 5.25845 5.37933 5.44131 5.51570 5.62869 5.70662 5.77045 5.80542 5.85489 5.91644 5.93812 6.14635 6.27974 6.60592 6.85032 6.92174 7.03206 7.20532 7.33700 7.35345 7.39488 7.77840 7.96706 8.97794 9.67494 10.69895 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.001972 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.000481 B =14193.742144 C =14510.583796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.098 3.902 3 H 0.083 0.917 4 N -0.679 5.679 5 C 0.107 3.893 6 C -0.048 4.048 7 C -0.189 4.189 8 C -0.077 4.077 9 C -0.231 4.231 10 C 0.152 3.848 11 O -0.180 6.180 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.185 4.185 21 C -0.077 4.077 22 H 0.097 0.903 23 C -0.100 4.100 24 C -0.591 4.591 25 S 2.383 3.617 26 O -0.941 6.941 27 O -0.945 6.945 28 C -0.585 4.585 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.348 0.652 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 7.731 18.495 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.014 4.014 3 H 0.102 0.898 4 N -0.310 5.310 5 C -0.021 4.021 6 C -0.049 4.049 7 C -0.209 4.209 8 C -0.096 4.096 9 C -0.250 4.250 10 C 0.099 3.901 11 O -0.084 6.084 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.205 4.205 21 C -0.097 4.097 22 H 0.115 0.885 23 C -0.138 4.138 24 C -0.721 4.721 25 S 2.568 3.432 26 O -0.938 6.938 27 O -0.942 6.942 28 C -0.715 4.715 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.001 7.624 19.558 21.833 hybrid contribution -0.484 -0.298 -1.936 2.018 sum 5.518 7.326 17.622 19.865 Atomic orbital electron populations 1.22581 0.96774 1.02795 1.02602 1.21447 0.92833 0.97733 0.89350 0.89846 1.60583 1.57386 1.09861 1.03153 1.20817 0.99233 0.94142 0.87928 1.19137 0.93324 0.97952 0.94482 1.20400 0.94284 1.06374 0.99823 1.20751 0.98200 0.96295 0.94309 1.21203 0.93133 1.07420 1.03262 1.19314 0.89264 0.90696 0.90832 1.83975 1.33228 1.61245 1.29909 1.21360 0.93476 1.37036 0.94874 0.89055 1.25284 0.95125 0.97279 0.98854 1.70043 1.02180 1.42373 1.35287 0.85653 0.78960 0.78716 0.80128 1.19112 1.20139 1.20156 1.20021 0.98992 1.04579 0.96863 1.21867 0.94768 1.00545 0.92526 0.88520 1.21879 0.93845 1.04387 0.93689 1.30508 1.17594 1.12040 1.11986 1.09196 0.79738 0.76069 0.78244 1.93624 1.77207 1.47566 1.75370 1.93606 1.81536 1.54922 1.64150 1.30736 1.15164 1.11403 1.14211 0.92098 0.91948 0.91805 0.83246 0.94509 0.90590 0.87654 0.87542 0.85675 0.92090 0.86990 0.89986 0.87597 0.84607 0.84608 0.84390 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 8.91 37.15 0.33 -1.06 16 2 C 0.10 0.73 2.15 -67.71 -0.15 0.58 16 3 H 0.08 0.57 7.80 -51.93 -0.40 0.17 16 4 N -0.68 -6.84 5.91 -107.99 -0.64 -7.48 16 5 C 0.11 1.27 5.61 -4.97 -0.03 1.25 16 6 C -0.05 -0.78 5.39 -104.65 -0.56 -1.34 16 7 C -0.19 -3.05 9.70 -39.53 -0.38 -3.43 16 8 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 9 C -0.23 -4.86 9.17 -39.39 -0.36 -5.22 16 10 C 0.15 3.55 6.65 -39.11 -0.26 3.29 16 11 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 12 C -0.39 -10.74 9.49 30.88 0.29 -10.45 16 13 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 14 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 15 N -0.86 -24.98 13.67 55.48 0.76 -24.23 16 16 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 C -0.18 -3.64 9.64 -39.40 -0.38 -4.02 16 21 C -0.08 -0.48 2.37 -89.01 -0.21 -0.69 16 22 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 23 C -0.10 -0.59 5.48 -25.60 -0.14 -0.74 16 24 C -0.59 -3.10 7.25 37.76 0.27 -2.83 16 25 S 2.38 16.99 6.11 -107.50 -0.66 16.33 16 26 O -0.94 -10.36 18.15 -57.71 -1.05 -11.41 16 27 O -0.95 -10.10 18.15 -57.71 -1.05 -11.14 16 28 C -0.58 -2.97 5.66 38.24 0.22 -2.75 16 29 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.38 6.99 -51.93 -0.36 0.02 16 32 H 0.35 3.81 8.46 -39.30 -0.33 3.48 16 33 H 0.04 0.43 7.38 -51.93 -0.38 0.05 16 34 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.11 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.14 0.57 7.72 -51.93 -0.40 0.17 16 45 H 0.14 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -35.23 379.61 -10.40 -45.63 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.61 Total: 4.59 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -1.85 Total: -28.22 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.12 Total: -31.70 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -2.09 Total: -27.56 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 16.99 SS G_CDS: -0.66 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.23 -10.40 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.353 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds