Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47416 * 2 1 4 4 N 1.46905 * 109.46732 * 240.00067 * 2 1 3 5 5 C 1.46897 * 110.99886 * 85.00308 * 4 2 1 6 6 C 1.50708 * 109.46759 * 180.02562 * 5 4 2 7 7 C 1.38320 * 119.95916 * 269.71801 * 6 5 4 8 8 C 1.38289 * 120.13085 * 179.76535 * 7 6 5 9 9 C 1.38121 * 120.07143 * 0.51360 * 8 7 6 10 10 C 1.38864 * 119.92761 * 359.74520 * 9 8 7 11 11 O 1.35751 * 120.06616 * 179.97438 * 10 9 8 12 12 C 1.34832 * 116.99978 * 354.48747 * 11 10 9 13 13 H 1.08003 * 119.99996 * 5.05482 * 12 11 10 14 14 C 1.38650 * 119.99908 * 185.05986 * 12 11 10 15 15 N 1.31558 * 120.00233 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47100 * 119.99928 * 16 14 12 19 19 H 1.48499 * 109.46786 * 239.99960 * 16 14 12 20 20 C 1.38077 * 119.96532 * 89.99859 * 6 5 4 21 21 C 1.52997 * 109.47474 * 120.00011 * 2 1 3 22 22 H 1.09004 * 110.01025 * 61.37567 * 21 2 1 23 23 C 1.54017 * 110.03465 * 182.71267 * 21 2 1 24 24 C 1.54158 * 108.63096 * 166.38375 * 23 21 2 25 25 S 1.82911 * 105.17872 * 332.22437 * 24 23 21 26 26 O 1.42101 * 109.35423 * 115.46959 * 25 24 23 27 27 O 1.42098 * 109.35874 * 248.67530 * 25 24 23 28 28 C 1.55051 * 110.02903 * 299.99964 * 21 2 1 29 29 H 1.09006 * 109.47563 * 59.99841 * 1 2 3 30 30 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47009 * 299.99903 * 1 2 3 32 32 H 1.00893 * 110.99726 * 321.04234 * 4 2 1 33 33 H 1.09003 * 109.46950 * 299.99197 * 5 4 2 34 34 H 1.08994 * 109.47563 * 60.00035 * 5 4 2 35 35 H 1.08000 * 119.93751 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.96047 * 180.25666 * 8 7 6 37 37 H 1.08000 * 120.03267 * 179.71667 * 9 8 7 38 38 H 0.97000 * 120.00307 * 179.97438 * 15 14 12 39 39 H 1.07994 * 120.03955 * 359.95210 * 20 6 5 40 40 H 1.09002 * 109.61384 * 46.59577 * 23 21 2 41 41 H 1.09001 * 109.75014 * 286.25908 * 23 21 2 42 42 H 1.09006 * 110.31843 * 213.26667 * 24 23 21 43 43 H 1.09006 * 110.31661 * 91.18246 * 24 23 21 44 44 H 1.09001 * 110.78960 * 80.00050 * 28 21 2 45 45 H 1.09002 * 110.78368 * 316.54716 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.5871 -0.5219 -3.5561 7 6 3.9438 -0.5693 -3.8215 8 6 4.4113 -1.2555 -4.9274 9 6 3.5234 -1.8869 -5.7763 10 6 2.1604 -1.8366 -5.5155 11 8 1.2853 -2.4557 -6.3483 12 6 1.7921 -3.0043 -7.4708 13 1 2.8597 -3.0112 -7.6341 14 6 0.9427 -3.5594 -8.4157 15 7 -0.3577 -3.5514 -8.2167 16 14 1.6448 -4.3188 -9.9714 17 1 3.1251 -4.2007 -9.9553 18 1 1.2628 -5.7522 -10.0385 19 1 1.1048 -3.6064 -11.1572 20 6 1.6944 -1.1510 -4.4010 21 6 2.0400 -0.7212 1.2492 22 1 1.7018 -1.7574 1.2459 23 6 3.5786 -0.6697 1.2969 24 6 4.0419 -1.0881 2.7065 25 16 2.6636 -0.6313 3.8188 26 8 2.1127 -1.8082 4.3940 27 8 3.0693 0.4442 4.6543 28 6 1.5304 -0.0004 2.5239 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4494 -1.4979 -1.4100 33 1 1.0869 0.6163 -2.5525 34 1 2.7587 1.0461 -2.1183 35 1 4.6398 -0.0729 -3.1614 36 1 5.4714 -1.2942 -5.1296 37 1 3.8888 -2.4188 -6.6423 38 1 -0.9520 -3.9394 -8.8779 39 1 0.6350 -1.1105 -4.1953 40 1 3.9174 0.3446 1.0859 41 1 3.9932 -1.3540 0.5566 42 1 4.9470 -0.5475 2.9834 43 1 4.2178 -2.1633 2.7434 44 1 0.4998 -0.2812 2.7412 45 1 1.6243 1.0806 2.4206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646357042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -105.293918 kcal Electronic energy + Delta-G solvation = -26548.251773 eV Core-core repulsion = 22657.236220 eV Total energy + Delta-G solvation = -3891.015553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.78383 -39.44084 -38.25576 -38.01616 -37.00772 -35.82286 -34.28175 -32.91537 -31.20345 -30.54014 -29.09293 -27.42624 -26.79395 -25.34972 -23.20892 -22.90212 -22.24654 -21.19536 -19.72946 -19.46656 -18.77101 -17.66487 -17.53347 -16.78447 -16.70355 -16.48977 -16.11717 -15.96429 -15.71313 -15.44842 -15.38097 -15.01739 -14.84663 -14.67916 -14.21704 -13.89744 -13.83140 -13.62130 -13.52284 -13.19044 -13.11350 -13.00876 -12.94173 -12.88317 -12.59914 -12.38321 -12.23800 -12.18374 -12.14956 -12.07927 -11.99675 -11.51246 -11.49577 -11.17275 -11.04421 -10.80290 -9.68636 -9.24715 -8.93935 -8.46657 -6.14540 -0.80845 0.56524 0.80333 1.34941 1.43125 1.52884 1.69624 2.17643 2.71224 2.82527 3.06799 3.16008 3.34605 3.50560 3.59993 3.76054 3.96992 4.02923 4.06651 4.12111 4.16599 4.31474 4.37482 4.38189 4.50187 4.56886 4.67647 4.75016 4.76038 4.78781 4.81506 4.93653 4.96597 5.06665 5.12791 5.15867 5.26806 5.34348 5.36477 5.40110 5.70018 5.78047 5.84727 6.04380 6.12322 6.30024 6.44015 6.98919 7.81035 8.76932 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024029 B = 0.001972 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.000481 B =14193.742144 C =14510.583796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.100 3.900 3 H 0.101 0.899 4 N -0.679 5.679 5 C 0.112 3.888 6 C -0.035 4.035 7 C -0.167 4.167 8 C -0.075 4.075 9 C -0.247 4.247 10 C 0.110 3.890 11 O -0.235 6.235 12 C -0.410 4.410 13 H 0.100 0.900 14 C -0.025 4.025 15 N -0.922 5.922 16 Si 1.017 2.983 17 H -0.252 1.252 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.195 4.195 21 C -0.079 4.079 22 H 0.094 0.906 23 C -0.100 4.100 24 C -0.574 4.574 25 S 2.383 3.617 26 O -0.988 6.988 27 O -0.985 6.985 28 C -0.567 4.567 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 9.438 19.536 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.010 4.010 3 H 0.119 0.881 4 N -0.309 5.309 5 C -0.017 4.017 6 C -0.036 4.036 7 C -0.186 4.186 8 C -0.093 4.093 9 C -0.266 4.266 10 C 0.060 3.940 11 O -0.143 6.143 12 C -0.486 4.486 13 H 0.117 0.883 14 C -0.222 4.222 15 N -0.561 5.561 16 Si 0.837 3.163 17 H -0.175 1.175 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.099 4.099 22 H 0.112 0.888 23 C -0.139 4.139 24 C -0.706 4.706 25 S 2.573 3.427 26 O -0.985 6.985 27 O -0.982 6.982 28 C -0.699 4.699 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.638 9.360 20.686 24.292 hybrid contribution -1.149 -0.642 -2.012 2.405 sum 7.489 8.718 18.673 21.927 Atomic orbital electron populations 1.22597 0.96906 1.02492 1.02944 1.21522 0.92727 0.98428 0.88369 0.88112 1.60589 1.57651 1.09488 1.03198 1.20826 0.99775 0.94320 0.86741 1.19611 0.93096 0.96077 0.94814 1.20968 0.94760 1.03934 0.98919 1.21162 0.99422 0.95009 0.93717 1.21297 0.92849 1.08449 1.04029 1.19917 0.90184 0.92214 0.91662 1.83934 1.35178 1.63967 1.31173 1.21822 0.94127 1.37246 0.95423 0.88263 1.26558 0.95423 0.97746 1.02431 1.70185 1.03888 1.44951 1.37058 0.84546 0.78853 0.77739 0.75182 1.17508 1.19394 1.19410 1.20257 0.99614 1.04917 0.96711 1.21874 0.95258 1.00541 0.92266 0.88775 1.21922 0.93342 1.05192 0.93442 1.30371 1.16824 1.12777 1.10625 1.08926 0.80321 0.74678 0.78731 1.93562 1.78422 1.49195 1.77320 1.93551 1.82408 1.55827 1.66454 1.30618 1.14869 1.12586 1.11837 0.93175 0.92673 0.90067 0.84076 0.94551 0.87863 0.83357 0.84049 0.86902 0.91937 0.87723 0.88402 0.88227 0.82955 0.83923 0.83247 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.91 71.98 0.64 -1.70 16 2 C 0.10 1.12 2.15 44.91 0.10 1.22 16 3 H 0.10 0.85 7.80 -2.39 -0.02 0.83 16 4 N -0.68 -11.45 5.91 -495.58 -2.93 -14.38 16 5 C 0.11 2.24 5.61 85.56 0.48 2.72 16 6 C -0.04 -1.05 5.39 -19.88 -0.11 -1.15 16 7 C -0.17 -4.63 9.70 22.30 0.22 -4.42 16 8 C -0.08 -2.42 10.04 22.25 0.22 -2.20 16 9 C -0.25 -10.46 9.17 22.39 0.21 -10.25 16 10 C 0.11 5.33 6.65 22.58 0.15 5.48 16 11 O -0.24 -14.02 9.76 -22.77 -0.22 -14.24 16 12 C -0.41 -23.74 9.49 67.92 0.64 -23.10 16 13 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 14 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 15 N -0.92 -56.40 13.67 21.61 0.30 -56.10 16 16 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 17 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 C -0.20 -7.79 9.64 22.39 0.22 -7.58 16 21 C -0.08 -0.72 2.37 -9.75 -0.02 -0.75 16 22 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 23 C -0.10 -0.81 5.48 31.33 0.17 -0.64 16 24 C -0.57 -4.41 7.25 72.37 0.53 -3.88 16 25 S 2.38 30.69 6.11 -56.49 -0.34 30.34 16 26 O -0.99 -21.60 18.15 -127.49 -2.31 -23.91 16 27 O -0.99 -20.12 18.15 -127.49 -2.31 -22.43 16 28 C -0.57 -4.02 5.66 72.68 0.41 -3.61 16 29 H 0.05 0.73 7.45 -2.38 -0.02 0.72 16 30 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.08 0.71 6.99 -2.39 -0.02 0.70 16 32 H 0.34 6.83 8.46 -89.70 -0.76 6.07 16 33 H 0.04 0.76 7.38 -2.39 -0.02 0.74 16 34 H 0.10 1.60 8.00 -2.39 -0.02 1.58 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.11 4.95 5.64 -2.91 -0.02 4.94 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.10 0.52 8.10 -2.39 -0.02 0.51 16 41 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.15 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.15 0.81 7.72 -2.39 -0.02 0.79 16 45 H 0.16 0.49 8.10 -2.39 -0.02 0.47 16 Total: -1.00 -82.75 379.61 -1.24 -83.99 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.25 Total: 22.79 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 4.32 Total: -50.76 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -2.63 Total: -70.48 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -4.85 Total: -60.59 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 30.69 SS G_CDS: -0.34 Total: 30.34 kcal Total: -82.75 -1.24 -83.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.306 kcal (2) G-P(sol) polarization free energy of solvation -82.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds