Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47010 * 2 1 4 4 N 1.46902 * 109.47249 * 119.99502 * 2 1 3 5 5 C 1.46896 * 110.99891 * 275.00274 * 4 2 1 6 6 C 1.50703 * 109.47172 * 179.97438 * 5 4 2 7 7 C 1.38322 * 119.96676 * 269.72690 * 6 5 4 8 8 C 1.38281 * 120.13559 * 179.76803 * 7 6 5 9 9 C 1.38115 * 120.07070 * 0.50432 * 8 7 6 10 10 C 1.38857 * 119.93317 * 359.74660 * 9 8 7 11 11 O 1.35744 * 120.07271 * 179.97438 * 10 9 8 12 12 C 1.34827 * 117.00061 * 354.48837 * 11 10 9 13 13 H 1.08005 * 119.99958 * 5.05880 * 12 11 10 14 14 C 1.38660 * 120.00395 * 185.05978 * 12 11 10 15 15 N 1.31551 * 120.00207 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99664 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47211 * 90.00084 * 16 14 12 18 18 H 1.48508 * 109.47060 * 209.99929 * 16 14 12 19 19 H 1.48500 * 109.47244 * 330.00056 * 16 14 12 20 20 C 1.38078 * 119.96253 * 89.99747 * 6 5 4 21 21 C 1.52994 * 109.47250 * 239.99564 * 2 1 3 22 22 H 1.09000 * 109.53637 * 185.35964 * 21 2 1 23 23 C 1.53872 * 109.64924 * 305.72470 * 21 2 1 24 24 C 1.55046 * 106.62587 * 167.03236 * 23 21 2 25 25 S 1.83287 * 102.56743 * 317.56583 * 24 23 21 26 26 O 1.42099 * 109.35509 * 269.81438 * 25 24 23 27 27 O 1.42103 * 109.35400 * 136.61356 * 25 24 23 28 28 C 1.54166 * 109.64572 * 64.99925 * 21 2 1 29 29 H 1.08995 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00140 * 1 2 3 31 31 H 1.09002 * 109.47013 * 60.00621 * 1 2 3 32 32 H 1.00902 * 110.99412 * 38.95461 * 4 2 1 33 33 H 1.09001 * 109.47430 * 299.99845 * 5 4 2 34 34 H 1.08997 * 109.47467 * 59.99846 * 5 4 2 35 35 H 1.08000 * 119.93130 * 359.97438 * 7 6 5 36 36 H 1.08004 * 119.95876 * 180.25568 * 8 7 6 37 37 H 1.08000 * 120.03660 * 179.73323 * 9 8 7 38 38 H 0.96999 * 120.00038 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.03853 * 359.95986 * 20 6 5 40 40 H 1.09007 * 110.02935 * 47.74005 * 23 21 2 41 41 H 1.09003 * 110.06900 * 286.34625 * 23 21 2 42 42 H 1.09003 * 110.78976 * 199.29742 * 24 23 21 43 43 H 1.08995 * 110.79271 * 75.83776 * 24 23 21 44 44 H 1.09001 * 110.31864 * 93.34033 * 28 21 2 45 45 H 1.08994 * 110.32241 * 331.14304 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3468 6 6 2.5874 -0.5215 3.5561 7 6 1.6928 -1.1470 4.4057 8 6 2.1526 -1.8349 5.5136 9 6 3.5065 -1.8907 5.7809 10 6 4.4067 -1.2594 4.9328 11 8 5.7379 -1.3120 5.1931 12 6 6.1129 -1.8942 6.3499 13 1 5.3743 -2.3648 6.9819 14 6 7.4469 -1.8887 6.7284 15 7 7.8128 -2.4572 7.8569 16 14 8.7243 -1.0740 5.6358 17 1 8.8666 0.3533 6.0201 18 1 10.0291 -1.7636 5.8009 19 1 8.2927 -1.1641 4.2177 20 6 3.9421 -0.5736 3.8178 21 6 2.0400 -0.7213 -1.2491 22 1 3.1258 -0.8058 -1.2035 23 6 1.4148 -2.1251 -1.3275 24 6 1.7019 -2.6595 -2.7544 25 16 1.3731 -1.1928 -3.8032 26 8 0.0072 -1.1905 -4.1949 27 8 2.3934 -1.0782 -4.7857 28 6 1.6343 0.0716 -2.5075 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.4496 -1.4978 1.4101 33 1 2.7588 1.0464 2.1182 34 1 1.0871 0.6165 2.5525 35 1 0.6333 -1.1008 4.2014 36 1 1.4518 -2.3258 6.1728 37 1 3.8646 -2.4245 6.6487 38 1 8.7459 -2.4530 8.1218 39 1 4.6398 -0.0819 3.1562 40 1 0.3392 -2.0646 -1.1610 41 1 1.8710 -2.7797 -0.5849 42 1 1.0235 -3.4749 -3.0059 43 1 2.7406 -2.9765 -2.8471 44 1 2.4333 0.7531 -2.7994 45 1 0.7122 0.6237 -2.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646357043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -71.658051 kcal Electronic energy + Delta-G solvation = -26676.960204 eV Core-core repulsion = 22787.403212 eV Total energy + Delta-G solvation = -3889.556992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -39.47281 -38.91765 -37.37742 -36.96670 -36.35191 -34.96683 -32.42809 -31.84133 -30.32118 -29.43225 -28.55116 -26.14158 -25.33996 -24.42322 -23.33610 -21.80758 -20.56989 -19.85067 -19.20622 -17.80151 -17.36753 -17.15790 -16.90882 -15.97417 -15.80088 -15.34615 -15.26103 -15.10392 -14.65934 -14.55329 -14.33621 -13.93487 -13.84060 -13.38051 -13.35978 -13.03666 -12.68790 -12.62321 -12.52474 -12.39033 -12.37656 -12.23035 -12.11859 -12.05797 -11.71932 -11.48691 -11.35378 -11.15062 -10.89509 -10.84618 -10.77072 -10.73083 -10.51886 -10.17101 -9.42723 -8.91140 -8.59787 -8.21286 -7.42748 -6.44301 -4.11332 -0.31754 1.96149 2.15257 2.20724 3.19885 3.20934 3.23903 3.38671 3.59595 3.82034 4.03284 4.16176 4.21429 4.34011 4.40631 4.49760 4.59263 4.67474 4.73409 4.82025 4.91899 5.02732 5.06860 5.17350 5.22853 5.25532 5.33597 5.45814 5.50475 5.58815 5.60518 5.68518 5.74645 5.76223 5.88305 6.07045 6.21788 6.47832 6.73313 6.83757 7.06664 7.11581 7.25977 7.27910 7.55560 7.76753 8.00658 8.91003 9.53298 10.63336 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002265 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.200950 B =12360.240017 C =13435.037845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.093 3.907 3 H 0.087 0.913 4 N -0.677 5.677 5 C 0.107 3.893 6 C -0.051 4.051 7 C -0.199 4.199 8 C -0.077 4.077 9 C -0.219 4.219 10 C 0.157 3.843 11 O -0.217 6.217 12 C -0.390 4.390 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.166 4.166 21 C -0.071 4.071 22 H 0.105 0.895 23 C -0.123 4.123 24 C -0.584 4.584 25 S 2.383 3.617 26 O -0.941 6.941 27 O -0.943 6.943 28 C -0.593 4.593 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.345 0.655 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.280 0.720 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 3.643 -18.280 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.018 4.018 3 H 0.105 0.895 4 N -0.308 5.308 5 C -0.022 4.022 6 C -0.052 4.052 7 C -0.219 4.219 8 C -0.095 4.095 9 C -0.238 4.238 10 C 0.105 3.895 11 O -0.122 6.122 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.186 4.186 21 C -0.091 4.091 22 H 0.123 0.877 23 C -0.162 4.162 24 C -0.715 4.715 25 S 2.568 3.432 26 O -0.938 6.938 27 O -0.940 6.940 28 C -0.723 4.723 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.468 3.839 -19.402 24.505 hybrid contribution -0.152 0.199 0.945 0.978 sum -14.620 4.038 -18.457 23.889 Atomic orbital electron populations 1.22743 0.97283 1.02864 1.02752 1.21479 0.92528 0.98151 0.89607 0.89531 1.60549 1.57314 1.09733 1.03175 1.20829 0.99096 0.94322 0.87910 1.19129 0.92676 0.98409 0.94999 1.20479 0.97855 1.05326 0.98227 1.20749 0.94855 0.97532 0.96383 1.21309 0.93133 1.06275 1.03110 1.19102 0.83903 0.93107 0.93346 1.83572 1.18328 1.70717 1.39602 1.20759 0.95208 1.34781 0.95794 0.87671 1.24466 0.97054 0.96441 0.96032 1.69642 1.18606 1.42508 1.20998 0.86182 0.79605 0.79421 0.81703 1.19904 1.20789 1.18300 1.20014 0.94607 1.05352 0.98644 1.21566 1.03003 0.92477 0.92051 0.87720 1.22445 1.02933 0.95993 0.94809 1.30599 1.12008 1.17968 1.10892 1.09192 0.75426 0.80583 0.78046 1.93617 1.33217 1.85732 1.81266 1.93618 1.59125 1.85253 1.55971 1.30677 1.11980 1.15511 1.14181 0.91496 0.91983 0.91661 0.83604 0.90408 0.94540 0.87904 0.87297 0.85048 0.91035 0.86523 0.89315 0.87505 0.84593 0.84315 0.84148 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 8.51 37.16 0.32 -0.84 16 2 C 0.09 0.65 2.36 -67.71 -0.16 0.49 16 3 H 0.09 0.61 7.80 -51.93 -0.40 0.20 16 4 N -0.68 -6.40 6.05 -107.99 -0.65 -7.05 16 5 C 0.11 1.20 5.61 -4.98 -0.03 1.17 16 6 C -0.05 -0.79 5.39 -104.65 -0.56 -1.35 16 7 C -0.20 -3.02 9.70 -39.53 -0.38 -3.41 16 8 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 9 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 10 C 0.16 3.51 6.65 -39.10 -0.26 3.25 16 11 O -0.22 -5.61 8.59 0.08 0.00 -5.61 16 12 C -0.39 -10.81 9.95 30.89 0.31 -10.50 16 13 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 14 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 15 N -0.88 -25.13 13.96 55.48 0.77 -24.35 16 16 Si 0.91 21.39 28.62 -169.99 -4.86 16.53 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 20 C -0.17 -3.12 9.65 -39.39 -0.38 -3.50 16 21 C -0.07 -0.42 2.59 -89.56 -0.23 -0.65 16 22 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 23 C -0.12 -0.66 5.21 -25.20 -0.13 -0.79 16 24 C -0.58 -2.90 7.31 38.24 0.28 -2.62 16 25 S 2.38 16.58 6.11 -107.50 -0.66 15.93 16 26 O -0.94 -9.74 18.15 -57.71 -1.05 -10.79 16 27 O -0.94 -10.27 18.15 -57.71 -1.05 -11.32 16 28 C -0.59 -2.94 6.62 37.77 0.25 -2.69 16 29 H 0.07 0.35 6.08 -51.93 -0.32 0.04 16 30 H 0.06 0.39 7.45 -51.93 -0.39 0.01 16 31 H 0.06 0.32 6.28 -51.93 -0.33 -0.01 16 32 H 0.34 3.10 8.27 -39.29 -0.32 2.78 16 33 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 34 H 0.04 0.36 7.38 -51.93 -0.38 -0.02 16 35 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.09 0.39 5.76 -51.93 -0.30 0.09 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.14 0.54 5.98 -51.93 -0.31 0.23 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -34.56 372.43 -9.99 -44.54 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.27 Total: 2.92 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -1.84 Total: -26.41 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.12 Total: -31.40 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -2.09 Total: -27.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.53 kcal Atomic # 16 Polarization: 16.58 SS G_CDS: -0.66 Total: 15.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.56 -9.99 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.114 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds