Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47010 * 2 1 4 4 N 1.46902 * 109.47249 * 119.99502 * 2 1 3 5 5 C 1.46896 * 110.99891 * 275.00274 * 4 2 1 6 6 C 1.50703 * 109.47172 * 179.97438 * 5 4 2 7 7 C 1.38322 * 119.96676 * 269.72690 * 6 5 4 8 8 C 1.38281 * 120.13559 * 179.76803 * 7 6 5 9 9 C 1.38115 * 120.07070 * 0.50432 * 8 7 6 10 10 C 1.38857 * 119.93317 * 359.74660 * 9 8 7 11 11 O 1.35744 * 120.07271 * 179.97438 * 10 9 8 12 12 C 1.34827 * 117.00061 * 354.48837 * 11 10 9 13 13 H 1.08005 * 119.99958 * 5.05880 * 12 11 10 14 14 C 1.38660 * 120.00395 * 185.05978 * 12 11 10 15 15 N 1.31551 * 120.00207 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99664 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47211 * 90.00084 * 16 14 12 18 18 H 1.48508 * 109.47060 * 209.99929 * 16 14 12 19 19 H 1.48500 * 109.47244 * 330.00056 * 16 14 12 20 20 C 1.38078 * 119.96253 * 89.99747 * 6 5 4 21 21 C 1.52994 * 109.47250 * 239.99564 * 2 1 3 22 22 H 1.09000 * 109.53637 * 185.35964 * 21 2 1 23 23 C 1.53872 * 109.64924 * 305.72470 * 21 2 1 24 24 C 1.55046 * 106.62587 * 167.03236 * 23 21 2 25 25 S 1.83287 * 102.56743 * 317.56583 * 24 23 21 26 26 O 1.42099 * 109.35509 * 269.81438 * 25 24 23 27 27 O 1.42103 * 109.35400 * 136.61356 * 25 24 23 28 28 C 1.54166 * 109.64572 * 64.99925 * 21 2 1 29 29 H 1.08995 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00140 * 1 2 3 31 31 H 1.09002 * 109.47013 * 60.00621 * 1 2 3 32 32 H 1.00902 * 110.99412 * 38.95461 * 4 2 1 33 33 H 1.09001 * 109.47430 * 299.99845 * 5 4 2 34 34 H 1.08997 * 109.47467 * 59.99846 * 5 4 2 35 35 H 1.08000 * 119.93130 * 359.97438 * 7 6 5 36 36 H 1.08004 * 119.95876 * 180.25568 * 8 7 6 37 37 H 1.08000 * 120.03660 * 179.73323 * 9 8 7 38 38 H 0.96999 * 120.00038 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.03853 * 359.95986 * 20 6 5 40 40 H 1.09007 * 110.02935 * 47.74005 * 23 21 2 41 41 H 1.09003 * 110.06900 * 286.34625 * 23 21 2 42 42 H 1.09003 * 110.78976 * 199.29742 * 24 23 21 43 43 H 1.08995 * 110.79271 * 75.83776 * 24 23 21 44 44 H 1.09001 * 110.31864 * 93.34033 * 28 21 2 45 45 H 1.08994 * 110.32241 * 331.14304 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3468 6 6 2.5874 -0.5215 3.5561 7 6 1.6928 -1.1470 4.4057 8 6 2.1526 -1.8349 5.5136 9 6 3.5065 -1.8907 5.7809 10 6 4.4067 -1.2594 4.9328 11 8 5.7379 -1.3120 5.1931 12 6 6.1129 -1.8942 6.3499 13 1 5.3743 -2.3648 6.9819 14 6 7.4469 -1.8887 6.7284 15 7 7.8128 -2.4572 7.8569 16 14 8.7243 -1.0740 5.6358 17 1 8.8666 0.3533 6.0201 18 1 10.0291 -1.7636 5.8009 19 1 8.2927 -1.1641 4.2177 20 6 3.9421 -0.5736 3.8178 21 6 2.0400 -0.7213 -1.2491 22 1 3.1258 -0.8058 -1.2035 23 6 1.4148 -2.1251 -1.3275 24 6 1.7019 -2.6595 -2.7544 25 16 1.3731 -1.1928 -3.8032 26 8 0.0072 -1.1905 -4.1949 27 8 2.3934 -1.0782 -4.7857 28 6 1.6343 0.0716 -2.5075 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.4496 -1.4978 1.4101 33 1 2.7588 1.0464 2.1182 34 1 1.0871 0.6165 2.5525 35 1 0.6333 -1.1008 4.2014 36 1 1.4518 -2.3258 6.1728 37 1 3.8646 -2.4245 6.6487 38 1 8.7459 -2.4530 8.1218 39 1 4.6398 -0.0819 3.1562 40 1 0.3392 -2.0646 -1.1610 41 1 1.8710 -2.7797 -0.5849 42 1 1.0235 -3.4749 -3.0059 43 1 2.7406 -2.9765 -2.8471 44 1 2.4333 0.7531 -2.7994 45 1 0.7122 0.6237 -2.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646357043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -97.435107 kcal Electronic energy + Delta-G solvation = -26678.077981 eV Core-core repulsion = 22787.403212 eV Total energy + Delta-G solvation = -3890.674769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90206 -39.69246 -38.41871 -38.04119 -37.03039 -35.77572 -34.43918 -32.74191 -31.25926 -30.70542 -29.30082 -27.30515 -26.66930 -25.33171 -23.88795 -23.25100 -22.06056 -20.38489 -19.77979 -19.63130 -18.85967 -17.74941 -17.54414 -16.88107 -16.65724 -16.55908 -16.44008 -15.96508 -15.77635 -15.57916 -15.30392 -15.08503 -14.99278 -14.60267 -14.38251 -14.11460 -13.94314 -13.81072 -13.36904 -13.27766 -13.07622 -13.05316 -12.93966 -12.89481 -12.60955 -12.50227 -12.39314 -12.35550 -12.16841 -12.00163 -11.87762 -11.59393 -11.29011 -11.25021 -11.05303 -10.90179 -9.67788 -9.26068 -9.01735 -8.49044 -6.21476 -0.83697 0.53428 0.72744 1.32052 1.35890 1.52664 1.66372 2.28785 2.68613 2.76784 3.04616 3.08689 3.11537 3.37695 3.57957 3.71540 3.91114 3.99194 4.04465 4.08765 4.13892 4.25850 4.32922 4.40341 4.46231 4.51531 4.60349 4.64937 4.71724 4.77908 4.85529 4.87637 5.02786 5.04912 5.11283 5.19135 5.25639 5.29075 5.42204 5.47027 5.70867 5.77031 5.81552 5.94161 6.13332 6.29886 6.57307 6.85811 7.61787 8.62709 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002265 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.200950 B =12360.240017 C =13435.037845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.096 3.904 3 H 0.089 0.911 4 N -0.687 5.687 5 C 0.112 3.888 6 C -0.038 4.038 7 C -0.172 4.172 8 C -0.078 4.078 9 C -0.241 4.241 10 C 0.117 3.883 11 O -0.247 6.247 12 C -0.397 4.397 13 H 0.080 0.920 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.263 1.263 20 C -0.170 4.170 21 C -0.073 4.073 22 H 0.100 0.900 23 C -0.126 4.126 24 C -0.569 4.569 25 S 2.383 3.617 26 O -0.980 6.980 27 O -0.990 6.990 28 C -0.575 4.575 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.349 0.651 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.284 0.716 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 4.814 -20.010 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.015 4.015 3 H 0.107 0.893 4 N -0.318 5.318 5 C -0.016 4.016 6 C -0.039 4.039 7 C -0.191 4.191 8 C -0.096 4.096 9 C -0.261 4.261 10 C 0.068 3.932 11 O -0.155 6.155 12 C -0.474 4.474 13 H 0.097 0.903 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.193 1.193 19 H -0.187 1.187 20 C -0.190 4.190 21 C -0.093 4.093 22 H 0.119 0.881 23 C -0.164 4.164 24 C -0.702 4.702 25 S 2.573 3.427 26 O -0.977 6.977 27 O -0.987 6.987 28 C -0.707 4.707 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.971 5.016 -21.188 27.607 hybrid contribution 0.243 -0.148 1.418 1.447 sum -16.728 4.868 -19.770 26.351 Atomic orbital electron populations 1.22755 0.96121 1.03590 1.03314 1.21500 0.93412 0.98043 0.88534 0.89276 1.60464 1.58309 1.09850 1.03193 1.20792 1.00203 0.93976 0.86678 1.19629 0.91074 0.96981 0.96186 1.21029 1.00107 1.01949 0.96036 1.21101 0.93380 0.97504 0.97568 1.21320 0.95101 1.07033 1.02600 1.19677 0.83076 0.95137 0.95289 1.83513 1.20468 1.72548 1.38974 1.20693 0.95176 1.34954 0.96542 0.90252 1.25275 0.98927 0.97282 0.97450 1.69728 1.19301 1.44768 1.22807 0.85217 0.77358 0.78754 0.79381 1.19092 1.19311 1.18697 1.20284 0.96506 1.04782 0.97409 1.21578 1.02897 0.92886 0.91930 0.88148 1.22521 1.03804 0.95550 0.94565 1.30493 1.12987 1.16863 1.09809 1.08950 0.73790 0.81612 0.78386 1.93561 1.34862 1.86643 1.82640 1.93555 1.59995 1.86311 1.58845 1.30530 1.13292 1.14691 1.12210 0.90734 0.91983 0.90635 0.83105 0.90191 0.92037 0.83350 0.84458 0.87876 0.90632 0.86199 0.87974 0.87485 0.83172 0.83463 0.82857 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 8.51 71.98 0.61 -0.79 16 2 C 0.10 0.92 2.36 44.91 0.11 1.02 16 3 H 0.09 0.85 7.80 -2.39 -0.02 0.84 16 4 N -0.69 -10.02 6.05 -495.58 -3.00 -13.02 16 5 C 0.11 1.99 5.61 85.56 0.48 2.47 16 6 C -0.04 -1.03 5.39 -19.88 -0.11 -1.13 16 7 C -0.17 -4.44 9.70 22.30 0.22 -4.22 16 8 C -0.08 -2.47 10.04 22.25 0.22 -2.25 16 9 C -0.24 -10.29 9.17 22.39 0.21 -10.09 16 10 C 0.12 5.34 6.65 22.58 0.15 5.49 16 11 O -0.25 -13.35 8.59 -22.65 -0.19 -13.54 16 12 C -0.40 -23.36 9.95 67.92 0.68 -22.69 16 13 H 0.08 4.90 5.44 -2.91 -0.02 4.88 16 14 C 0.01 0.51 5.49 84.84 0.47 0.97 16 15 N -0.92 -55.28 13.96 21.61 0.30 -54.98 16 16 Si 0.97 45.38 28.62 68.60 1.96 47.35 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 20 C -0.17 -6.19 9.65 22.39 0.22 -5.97 16 21 C -0.07 -0.62 2.59 -10.11 -0.03 -0.64 16 22 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 23 C -0.13 -0.92 5.21 31.59 0.16 -0.75 16 24 C -0.57 -4.30 7.31 72.68 0.53 -3.77 16 25 S 2.38 30.21 6.11 -56.49 -0.34 29.86 16 26 O -0.98 -19.41 18.15 -127.49 -2.31 -21.72 16 27 O -0.99 -21.43 18.15 -127.49 -2.31 -23.74 16 28 C -0.58 -4.06 6.62 72.38 0.48 -3.58 16 29 H 0.07 0.43 6.08 -2.39 -0.01 0.41 16 30 H 0.06 0.47 7.45 -2.39 -0.02 0.45 16 31 H 0.07 0.40 6.28 -2.39 -0.01 0.39 16 32 H 0.35 4.60 8.27 -89.69 -0.74 3.86 16 33 H 0.08 1.45 8.00 -2.39 -0.02 1.43 16 34 H 0.06 0.84 7.38 -2.39 -0.02 0.83 16 35 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.10 4.93 5.64 -2.91 -0.02 4.91 16 38 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.10 0.49 5.76 -2.38 -0.01 0.48 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.16 0.66 5.98 -2.39 -0.01 0.64 16 Total: -1.00 -79.86 372.43 -1.23 -81.09 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.28 Total: 14.64 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 4.39 Total: -45.93 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.70 Total: -68.00 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -4.82 Total: -59.01 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.96 Total: 47.35 kcal Atomic # 16 Polarization: 30.21 SS G_CDS: -0.34 Total: 29.86 kcal Total: -79.86 -1.23 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.348 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds