Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47046 * 2 1 4 4 N 1.46900 * 109.47411 * 120.00018 * 2 1 3 5 5 C 1.46899 * 111.00057 * 275.00284 * 4 2 1 6 6 C 1.50694 * 109.47228 * 179.97438 * 5 4 2 7 7 C 1.38324 * 119.96840 * 89.99647 * 6 5 4 8 8 C 1.38281 * 120.14450 * 179.72075 * 7 6 5 9 9 C 1.38122 * 120.06308 * 359.97438 * 8 7 6 10 10 C 1.38860 * 119.93153 * 0.02562 * 9 8 7 11 11 O 1.35755 * 120.06625 * 179.97438 * 10 9 8 12 12 C 1.34827 * 116.99874 * 354.45844 * 11 10 9 13 13 H 1.07995 * 120.00373 * 5.06103 * 12 11 10 14 14 C 1.38658 * 119.99764 * 185.05543 * 12 11 10 15 15 N 1.31551 * 119.99844 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99902 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47337 * 119.99933 * 16 14 12 19 19 H 1.48503 * 109.47178 * 240.00175 * 16 14 12 20 20 C 1.38080 * 119.96748 * 269.71995 * 6 5 4 21 21 C 1.53005 * 109.47059 * 239.99794 * 2 1 3 22 22 H 1.09000 * 110.00974 * 299.30055 * 21 2 1 23 23 C 1.53880 * 110.02627 * 177.91823 * 21 2 1 24 24 C 1.54189 * 108.68628 * 193.57486 * 23 21 2 25 25 S 1.82913 * 105.11217 * 27.83729 * 24 23 21 26 26 O 1.42099 * 109.35412 * 244.51550 * 25 24 23 27 27 O 1.42103 * 109.47437 * 111.34922 * 25 24 23 28 28 C 1.55050 * 110.02459 * 60.67957 * 21 2 1 29 29 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46840 * 299.99938 * 1 2 3 31 31 H 1.08997 * 109.47197 * 59.99766 * 1 2 3 32 32 H 1.00903 * 110.99514 * 38.94759 * 4 2 1 33 33 H 1.09003 * 109.47485 * 59.99289 * 5 4 2 34 34 H 1.09003 * 109.46512 * 299.99692 * 5 4 2 35 35 H 1.08004 * 119.92736 * 359.74479 * 7 6 5 36 36 H 1.07995 * 119.96849 * 180.02562 * 8 7 6 37 37 H 1.08002 * 120.03483 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99787 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.03283 * 0.28118 * 20 6 5 40 40 H 1.08989 * 109.64631 * 313.38060 * 23 21 2 41 41 H 1.09005 * 109.64161 * 73.68114 * 23 21 2 42 42 H 1.09006 * 110.27770 * 268.94272 * 24 23 21 43 43 H 1.09000 * 110.42921 * 146.80923 * 24 23 21 44 44 H 1.09002 * 110.79062 * 279.99156 * 28 21 2 45 45 H 1.08998 * 110.79171 * 43.26341 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5874 -0.5218 3.5559 7 6 3.9446 -0.5741 3.8182 8 6 4.4114 -1.2512 4.9298 9 6 3.5231 -1.8773 5.7823 10 6 2.1601 -1.8266 5.5218 11 8 1.2846 -2.4414 6.3575 12 6 1.8081 -3.1797 7.3569 13 1 2.8763 -3.1955 7.5144 14 6 0.9747 -3.9188 8.1827 15 7 -0.3267 -3.8991 7.9913 16 14 1.6997 -4.9411 9.5678 17 1 3.1773 -4.7922 9.5718 18 1 1.1522 -4.4740 10.8668 19 1 1.3462 -6.3693 9.3663 20 6 1.6944 -1.1462 4.4041 21 6 2.0400 -0.7213 -1.2493 22 1 1.6918 -1.7542 -1.2519 23 6 3.5778 -0.6835 -1.2887 24 6 4.0463 -1.1018 -2.6969 25 16 2.6787 -0.6274 -3.8150 26 8 2.1197 -1.7966 -4.3978 27 8 3.0970 0.4469 -4.6458 28 6 1.5444 0.0094 -2.5238 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.4495 -1.4979 1.4100 33 1 1.0871 0.6164 2.5525 34 1 2.7589 1.0462 2.1181 35 1 4.6410 -0.0846 3.1535 36 1 5.4716 -1.2899 5.1321 37 1 3.8883 -2.4057 6.6506 38 1 -0.9097 -4.4164 8.5688 39 1 0.6349 -1.1051 4.1988 40 1 3.9252 0.3268 -1.0726 41 1 3.9805 -1.3738 -0.5475 42 1 4.2108 -2.1787 -2.7359 43 1 4.9585 -0.5703 -2.9679 44 1 0.5124 -0.2606 -2.7480 45 1 1.6451 1.0892 -2.4145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646357044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -78.997815 kcal Electronic energy + Delta-G solvation = -26564.701546 eV Core-core repulsion = 22674.826278 eV Total energy + Delta-G solvation = -3889.875268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -39.27501 -38.61810 -37.32514 -36.77344 -36.30589 -34.99068 -32.36378 -31.95042 -30.18835 -29.16848 -28.28028 -26.25880 -25.41300 -24.32695 -22.39807 -21.61254 -20.94362 -20.43779 -19.14201 -17.73956 -17.16540 -17.08000 -16.83611 -16.07723 -15.34920 -15.26539 -15.10339 -14.72303 -14.58026 -14.32779 -14.28052 -14.23604 -13.61555 -13.56470 -13.22800 -12.96076 -12.60781 -12.58070 -12.48636 -12.43585 -12.31310 -12.17860 -11.75462 -11.67297 -11.62511 -11.54420 -11.30924 -11.05160 -10.96531 -10.84361 -10.72958 -10.66047 -10.50347 -10.40928 -9.38127 -8.88007 -8.53864 -8.11929 -7.27259 -6.48347 -4.07569 -0.26959 2.04073 2.20626 2.34335 3.09595 3.11314 3.16710 3.26209 3.62779 3.88568 3.94019 4.08504 4.26953 4.42690 4.46570 4.59457 4.67492 4.79849 4.89091 5.04184 5.08402 5.13376 5.17788 5.20637 5.26147 5.38294 5.44151 5.51388 5.62995 5.70913 5.77216 5.80834 5.86228 5.91700 5.94040 6.14653 6.27974 6.60637 6.84979 6.92385 7.03254 7.20579 7.33740 7.35503 7.39492 7.77831 7.96705 8.97779 9.67507 10.69863 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.002001 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.979932 B =13989.029015 C =14228.637427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.098 3.902 3 H 0.083 0.917 4 N -0.679 5.679 5 C 0.107 3.893 6 C -0.048 4.048 7 C -0.189 4.189 8 C -0.077 4.077 9 C -0.231 4.231 10 C 0.152 3.848 11 O -0.180 6.180 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.184 4.184 21 C -0.077 4.077 22 H 0.097 0.903 23 C -0.100 4.100 24 C -0.591 4.591 25 S 2.383 3.617 26 O -0.941 6.941 27 O -0.945 6.945 28 C -0.585 4.585 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.349 0.651 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 8.176 -18.163 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.014 4.014 3 H 0.101 0.899 4 N -0.310 5.310 5 C -0.021 4.021 6 C -0.049 4.049 7 C -0.209 4.209 8 C -0.096 4.096 9 C -0.250 4.250 10 C 0.099 3.901 11 O -0.084 6.084 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.204 4.204 21 C -0.097 4.097 22 H 0.115 0.885 23 C -0.138 4.138 24 C -0.721 4.721 25 S 2.568 3.432 26 O -0.938 6.938 27 O -0.942 6.942 28 C -0.715 4.715 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.967 8.083 -19.221 21.688 hybrid contribution -0.480 -0.435 1.851 1.961 sum 5.487 7.647 -17.370 19.756 Atomic orbital electron populations 1.22580 0.96776 1.02802 1.02588 1.21451 0.92833 0.97725 0.89358 0.89851 1.60592 1.57379 1.09863 1.03149 1.20819 0.99216 0.94144 0.87937 1.19138 0.93325 0.97894 0.94543 1.20398 0.94271 1.06477 0.99732 1.20749 0.98201 0.96296 0.94307 1.21202 0.93186 1.07458 1.03179 1.19311 0.89197 0.91817 0.89785 1.83975 1.32115 1.55890 1.36378 1.21358 0.93608 1.24743 1.07041 0.89055 1.25283 0.95230 0.97287 0.98741 1.70043 1.02614 1.39268 1.37950 0.85653 0.78978 0.79143 0.79683 1.19111 1.20163 1.20129 1.20022 0.99045 1.05416 0.95964 1.21845 0.94871 1.00455 0.92533 0.88521 1.21857 0.93799 1.04434 0.93722 1.30506 1.17442 1.12106 1.12040 1.09201 0.79704 0.76105 0.78239 1.93622 1.76976 1.48122 1.75064 1.93606 1.81272 1.54994 1.64352 1.30743 1.15237 1.11380 1.14181 0.91939 0.92111 0.91810 0.83224 0.94516 0.90593 0.87656 0.87541 0.85678 0.92089 0.86992 0.89978 0.87577 0.84600 0.84600 0.84412 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 8.92 37.16 0.33 -1.07 16 2 C 0.10 0.73 2.14 -67.71 -0.15 0.58 16 3 H 0.08 0.57 7.80 -51.93 -0.40 0.17 16 4 N -0.68 -6.87 5.88 -107.99 -0.64 -7.50 16 5 C 0.11 1.27 5.61 -4.98 -0.03 1.25 16 6 C -0.05 -0.78 5.39 -104.65 -0.56 -1.34 16 7 C -0.19 -3.05 9.70 -39.53 -0.38 -3.43 16 8 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 9 C -0.23 -4.86 9.17 -39.39 -0.36 -5.22 16 10 C 0.15 3.55 6.65 -39.11 -0.26 3.29 16 11 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 12 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 13 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 14 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 15 N -0.86 -24.97 13.67 55.48 0.76 -24.22 16 16 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.18 -3.64 9.64 -39.40 -0.38 -4.02 16 21 C -0.08 -0.48 2.36 -89.08 -0.21 -0.69 16 22 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 23 C -0.10 -0.60 5.45 -25.65 -0.14 -0.74 16 24 C -0.59 -3.13 7.26 37.78 0.27 -2.85 16 25 S 2.38 17.10 6.10 -107.50 -0.66 16.45 16 26 O -0.94 -10.42 18.15 -57.73 -1.05 -11.47 16 27 O -0.95 -10.14 18.15 -57.73 -1.05 -11.19 16 28 C -0.59 -2.99 5.69 38.24 0.22 -2.77 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 31 H 0.06 0.39 7.00 -51.93 -0.36 0.02 16 32 H 0.35 3.84 8.46 -39.29 -0.33 3.51 16 33 H 0.04 0.43 7.38 -51.93 -0.38 0.05 16 34 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.08 0.43 8.10 -51.94 -0.42 0.01 16 41 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.14 0.58 7.72 -51.93 -0.40 0.18 16 45 H 0.14 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -35.23 379.59 -10.39 -45.62 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.61 Total: 4.66 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -1.85 Total: -28.28 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.12 Total: -31.72 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -2.09 Total: -27.67 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 17.10 SS G_CDS: -0.66 Total: 16.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.23 -10.39 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.375 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds