Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47046 * 2 1 4 4 N 1.46900 * 109.47411 * 120.00018 * 2 1 3 5 5 C 1.46899 * 111.00057 * 275.00284 * 4 2 1 6 6 C 1.50694 * 109.47228 * 179.97438 * 5 4 2 7 7 C 1.38324 * 119.96840 * 89.99647 * 6 5 4 8 8 C 1.38281 * 120.14450 * 179.72075 * 7 6 5 9 9 C 1.38122 * 120.06308 * 359.97438 * 8 7 6 10 10 C 1.38860 * 119.93153 * 0.02562 * 9 8 7 11 11 O 1.35755 * 120.06625 * 179.97438 * 10 9 8 12 12 C 1.34827 * 116.99874 * 354.45844 * 11 10 9 13 13 H 1.07995 * 120.00373 * 5.06103 * 12 11 10 14 14 C 1.38658 * 119.99764 * 185.05543 * 12 11 10 15 15 N 1.31551 * 119.99844 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99902 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47337 * 119.99933 * 16 14 12 19 19 H 1.48503 * 109.47178 * 240.00175 * 16 14 12 20 20 C 1.38080 * 119.96748 * 269.71995 * 6 5 4 21 21 C 1.53005 * 109.47059 * 239.99794 * 2 1 3 22 22 H 1.09000 * 110.00974 * 299.30055 * 21 2 1 23 23 C 1.53880 * 110.02627 * 177.91823 * 21 2 1 24 24 C 1.54189 * 108.68628 * 193.57486 * 23 21 2 25 25 S 1.82913 * 105.11217 * 27.83729 * 24 23 21 26 26 O 1.42099 * 109.35412 * 244.51550 * 25 24 23 27 27 O 1.42103 * 109.47437 * 111.34922 * 25 24 23 28 28 C 1.55050 * 110.02459 * 60.67957 * 21 2 1 29 29 H 1.08999 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46840 * 299.99938 * 1 2 3 31 31 H 1.08997 * 109.47197 * 59.99766 * 1 2 3 32 32 H 1.00903 * 110.99514 * 38.94759 * 4 2 1 33 33 H 1.09003 * 109.47485 * 59.99289 * 5 4 2 34 34 H 1.09003 * 109.46512 * 299.99692 * 5 4 2 35 35 H 1.08004 * 119.92736 * 359.74479 * 7 6 5 36 36 H 1.07995 * 119.96849 * 180.02562 * 8 7 6 37 37 H 1.08002 * 120.03483 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99787 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.03283 * 0.28118 * 20 6 5 40 40 H 1.08989 * 109.64631 * 313.38060 * 23 21 2 41 41 H 1.09005 * 109.64161 * 73.68114 * 23 21 2 42 42 H 1.09006 * 110.27770 * 268.94272 * 24 23 21 43 43 H 1.09000 * 110.42921 * 146.80923 * 24 23 21 44 44 H 1.09002 * 110.79062 * 279.99156 * 28 21 2 45 45 H 1.08998 * 110.79171 * 43.26341 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5874 -0.5218 3.5559 7 6 3.9446 -0.5741 3.8182 8 6 4.4114 -1.2512 4.9298 9 6 3.5231 -1.8773 5.7823 10 6 2.1601 -1.8266 5.5218 11 8 1.2846 -2.4414 6.3575 12 6 1.8081 -3.1797 7.3569 13 1 2.8763 -3.1955 7.5144 14 6 0.9747 -3.9188 8.1827 15 7 -0.3267 -3.8991 7.9913 16 14 1.6997 -4.9411 9.5678 17 1 3.1773 -4.7922 9.5718 18 1 1.1522 -4.4740 10.8668 19 1 1.3462 -6.3693 9.3663 20 6 1.6944 -1.1462 4.4041 21 6 2.0400 -0.7213 -1.2493 22 1 1.6918 -1.7542 -1.2519 23 6 3.5778 -0.6835 -1.2887 24 6 4.0463 -1.1018 -2.6969 25 16 2.6787 -0.6274 -3.8150 26 8 2.1197 -1.7966 -4.3978 27 8 3.0970 0.4469 -4.6458 28 6 1.5444 0.0094 -2.5238 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.4495 -1.4979 1.4100 33 1 1.0871 0.6164 2.5525 34 1 2.7589 1.0462 2.1181 35 1 4.6410 -0.0846 3.1535 36 1 5.4716 -1.2899 5.1321 37 1 3.8883 -2.4057 6.6506 38 1 -0.9097 -4.4164 8.5688 39 1 0.6349 -1.1051 4.1988 40 1 3.9252 0.3268 -1.0726 41 1 3.9805 -1.3738 -0.5475 42 1 4.2108 -2.1787 -2.7359 43 1 4.9585 -0.5703 -2.9679 44 1 0.5124 -0.2606 -2.7480 45 1 1.6451 1.0892 -2.4145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646357044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -105.293882 kcal Electronic energy + Delta-G solvation = -26565.841829 eV Core-core repulsion = 22674.826278 eV Total energy + Delta-G solvation = -3891.015551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78380 -39.44496 -38.25713 -38.01098 -37.01083 -35.82411 -34.28229 -32.91449 -31.20282 -30.53906 -29.09720 -27.42562 -26.79353 -25.34819 -23.20787 -22.90285 -22.24652 -21.19612 -19.72982 -19.46583 -18.77084 -17.66390 -17.53382 -16.78325 -16.70318 -16.48897 -16.12403 -15.96014 -15.71149 -15.46451 -15.35740 -15.01623 -14.85083 -14.68720 -14.21926 -13.89642 -13.83511 -13.60144 -13.52807 -13.19047 -13.11178 -13.01267 -12.94200 -12.87468 -12.61457 -12.36340 -12.24051 -12.19065 -12.14959 -12.07629 -11.99868 -11.51373 -11.49964 -11.17360 -11.04352 -10.80134 -9.68523 -9.24777 -8.93916 -8.46668 -6.14449 -0.80980 0.56529 0.80407 1.34982 1.43156 1.52874 1.69706 2.17647 2.71552 2.82824 3.05664 3.15061 3.37691 3.50729 3.58627 3.76190 3.96821 4.02980 4.06468 4.12226 4.16640 4.31419 4.37510 4.38177 4.50258 4.56901 4.67691 4.75004 4.76133 4.78835 4.81596 4.93710 4.96505 5.06648 5.12812 5.15954 5.26896 5.34400 5.36528 5.40397 5.70054 5.78081 5.84747 6.04421 6.12445 6.30082 6.43769 6.98959 7.81088 8.76955 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.002001 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.979932 B =13989.029015 C =14228.637427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.100 3.900 3 H 0.101 0.899 4 N -0.679 5.679 5 C 0.112 3.888 6 C -0.035 4.035 7 C -0.167 4.167 8 C -0.075 4.075 9 C -0.247 4.247 10 C 0.110 3.890 11 O -0.235 6.235 12 C -0.410 4.410 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.017 2.983 17 H -0.252 1.252 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.195 4.195 21 C -0.079 4.079 22 H 0.094 0.906 23 C -0.101 4.101 24 C -0.573 4.573 25 S 2.383 3.617 26 O -0.988 6.988 27 O -0.985 6.985 28 C -0.567 4.567 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 9.779 -19.281 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.010 4.010 3 H 0.119 0.881 4 N -0.309 5.309 5 C -0.017 4.017 6 C -0.036 4.036 7 C -0.186 4.186 8 C -0.093 4.093 9 C -0.266 4.266 10 C 0.060 3.940 11 O -0.143 6.143 12 C -0.486 4.486 13 H 0.117 0.883 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.837 3.163 17 H -0.175 1.175 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.099 4.099 22 H 0.112 0.888 23 C -0.139 4.139 24 C -0.706 4.706 25 S 2.573 3.427 26 O -0.985 6.985 27 O -0.982 6.982 28 C -0.699 4.699 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.614 9.720 -20.422 24.202 hybrid contribution -1.150 -0.726 1.964 2.389 sum 7.464 8.993 -18.458 21.847 Atomic orbital electron populations 1.22596 0.96913 1.02475 1.02947 1.21525 0.92721 0.98431 0.88367 0.88084 1.60598 1.57636 1.09491 1.03214 1.20829 0.99786 0.94314 0.86734 1.19611 0.93091 0.96045 0.94852 1.20966 0.94754 1.03989 0.98860 1.21160 0.99420 0.95019 0.93716 1.21297 0.92903 1.08497 1.03933 1.19915 0.90157 0.93080 0.90832 1.83934 1.34057 1.58213 1.38051 1.21818 0.94244 1.25071 1.07483 0.88272 1.26555 0.95585 0.98490 1.01517 1.70185 1.04349 1.41497 1.40041 0.84547 0.78800 0.77131 0.75849 1.17514 1.19405 1.19397 1.20259 0.99661 1.05729 0.95842 1.21852 0.95354 1.00448 0.92288 0.88800 1.21900 0.93311 1.05227 0.93472 1.30370 1.16717 1.12815 1.10655 1.08931 0.80267 0.74730 0.78729 1.93560 1.78196 1.49741 1.77040 1.93551 1.82144 1.55902 1.66648 1.30623 1.14941 1.12556 1.11811 0.92706 0.93159 0.90069 0.84093 0.94524 0.87841 0.83357 0.84050 0.86909 0.91939 0.87723 0.88381 0.88235 0.83928 0.82930 0.83272 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 8.92 71.98 0.64 -1.71 16 2 C 0.10 1.13 2.14 44.92 0.10 1.22 16 3 H 0.10 0.85 7.80 -2.39 -0.02 0.83 16 4 N -0.68 -11.51 5.88 -495.57 -2.92 -14.42 16 5 C 0.11 2.24 5.61 85.56 0.48 2.72 16 6 C -0.04 -1.05 5.39 -19.88 -0.11 -1.15 16 7 C -0.17 -4.63 9.70 22.30 0.22 -4.41 16 8 C -0.08 -2.42 10.04 22.25 0.22 -2.20 16 9 C -0.25 -10.46 9.17 22.39 0.21 -10.25 16 10 C 0.11 5.33 6.65 22.58 0.15 5.48 16 11 O -0.24 -14.02 9.76 -22.77 -0.22 -14.24 16 12 C -0.41 -23.74 9.49 67.92 0.64 -23.09 16 13 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 14 C -0.02 -1.38 5.49 84.84 0.47 -0.91 16 15 N -0.92 -56.38 13.67 21.61 0.30 -56.08 16 16 Si 1.02 42.69 29.55 68.60 2.03 44.72 16 17 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 C -0.20 -7.79 9.64 22.39 0.22 -7.57 16 21 C -0.08 -0.73 2.36 -9.79 -0.02 -0.76 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 C -0.10 -0.82 5.45 31.29 0.17 -0.65 16 24 C -0.57 -4.45 7.26 72.38 0.53 -3.93 16 25 S 2.38 30.90 6.10 -56.49 -0.34 30.56 16 26 O -0.99 -21.73 18.15 -127.47 -2.31 -24.05 16 27 O -0.99 -20.20 18.15 -127.47 -2.31 -22.51 16 28 C -0.57 -4.06 5.69 72.68 0.41 -3.65 16 29 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 31 H 0.08 0.72 7.00 -2.39 -0.02 0.70 16 32 H 0.34 6.89 8.46 -89.69 -0.76 6.13 16 33 H 0.04 0.76 7.38 -2.39 -0.02 0.74 16 34 H 0.10 1.59 8.00 -2.39 -0.02 1.57 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.10 0.53 8.10 -2.39 -0.02 0.51 16 41 H 0.10 1.04 8.11 -2.38 -0.02 1.02 16 42 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.15 0.82 7.72 -2.39 -0.02 0.80 16 45 H 0.16 0.50 8.10 -2.39 -0.02 0.48 16 Total: -1.00 -82.76 379.59 -1.22 -83.98 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.25 Total: 22.91 kcal Atomic # 6 Polarization: -55.18 SS G_CDS: 4.32 Total: -50.86 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -2.62 Total: -70.51 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -4.85 Total: -60.80 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 30.90 SS G_CDS: -0.34 Total: 30.56 kcal Total: -82.76 -1.22 -83.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646357044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.309 kcal (2) G-P(sol) polarization free energy of solvation -82.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds