Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47051 * 2 1 4 4 C 1.42905 * 114.00008 * 180.02562 * 3 2 1 5 5 C 1.53772 * 113.61524 * 210.00200 * 4 3 2 6 6 C 1.53785 * 87.08343 * 220.02007 * 5 4 3 7 7 N 1.46500 * 113.61281 * 270.88513 * 6 5 4 8 8 C 1.46500 * 119.99901 * 51.14591 * 7 6 5 9 9 S 1.65600 * 120.00096 * 231.14791 * 7 6 5 10 10 O 1.42098 * 106.40468 * 203.53837 * 9 7 6 11 11 O 1.42095 * 106.39991 * 336.46245 * 9 7 6 12 12 C 1.76201 * 107.21708 * 89.99979 * 9 7 6 13 13 C 1.38640 * 119.74780 * 269.72663 * 12 9 7 14 14 C 1.37621 * 120.24417 * 179.71905 * 13 12 9 15 15 C 1.40715 * 119.74613 * 0.57576 * 14 13 12 16 16 C 1.41400 * 120.24555 * 179.67769 * 15 14 13 17 17 H 1.07998 * 119.99672 * 23.39115 * 16 15 14 18 18 C 1.39937 * 120.00135 * 203.39660 * 16 15 14 19 19 N 1.30829 * 120.00134 * 17.94778 * 18 16 15 20 20 Si 1.86799 * 119.99937 * 197.94374 * 18 16 15 21 21 H 1.48493 * 109.47155 * 90.00073 * 20 18 16 22 22 H 1.48503 * 109.47258 * 210.00061 * 20 18 16 23 23 H 1.48500 * 109.47046 * 329.99920 * 20 18 16 24 24 C 1.40718 * 119.51259 * 359.70179 * 15 14 13 25 25 C 1.37618 * 119.74366 * 359.97438 * 24 15 14 26 26 C 1.53777 * 113.61291 * 112.50244 * 4 3 2 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46706 * 299.99737 * 1 2 3 29 29 H 1.08998 * 109.47467 * 59.99617 * 1 2 3 30 30 H 1.09004 * 109.46932 * 240.00585 * 2 1 3 31 31 H 1.08998 * 109.47467 * 120.00383 * 2 1 3 32 32 H 1.08997 * 112.90657 * 341.25566 * 4 3 2 33 33 H 1.09002 * 113.61803 * 105.47270 * 5 4 3 34 34 H 1.09004 * 113.61826 * 334.56406 * 5 4 3 35 35 H 1.08992 * 113.61696 * 139.98457 * 6 5 4 36 36 H 1.09003 * 109.47328 * 83.77410 * 8 7 6 37 37 H 1.09008 * 109.47233 * 203.77219 * 8 7 6 38 38 H 1.08993 * 109.47771 * 323.77193 * 8 7 6 39 39 H 1.07993 * 119.87514 * 359.97438 * 13 12 9 40 40 H 1.08004 * 120.12402 * 180.27551 * 14 13 12 41 41 H 0.96999 * 119.99611 * 180.02562 * 19 18 16 42 42 H 1.07992 * 120.12658 * 179.97438 * 24 15 14 43 43 H 1.07997 * 119.87790 * 180.02562 * 25 24 15 44 44 H 1.09000 * 113.61800 * 25.43813 * 26 4 3 45 45 H 1.09000 * 113.61670 * 254.53185 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9489 2.7250 0.7039 6 6 4.9896 2.8314 -0.4233 7 7 6.2319 2.1064 -0.1453 8 6 6.1833 0.7029 0.2719 9 16 7.6912 2.8733 -0.3027 10 8 8.6584 1.8551 -0.5195 11 8 7.4825 3.9517 -1.2042 12 6 8.0714 3.5964 1.2584 13 6 7.6586 4.8904 1.5360 14 6 7.9450 5.4631 2.7542 15 6 8.6702 4.7344 3.7150 16 6 8.9762 5.3150 4.9675 17 1 8.3715 6.1241 5.3497 18 6 10.0625 4.8413 5.7117 19 7 10.9930 4.1290 5.1300 20 14 10.1841 5.2262 7.5355 21 1 9.5049 4.1588 8.3130 22 1 11.6133 5.2947 7.9328 23 1 9.5307 6.5310 7.8107 24 6 9.0891 3.4239 3.4201 25 6 8.7857 2.8688 2.1979 26 6 4.0018 2.0465 -1.3025 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9291 0.5458 0.3217 33 1 4.3850 2.5315 1.6839 34 1 3.2305 3.5447 0.7136 35 1 5.1615 3.8524 -0.7640 36 1 6.1081 0.0645 -0.6084 37 1 7.0907 0.4561 0.8232 38 1 5.3151 0.5438 0.9113 39 1 7.1066 5.4496 0.7951 40 1 7.6186 6.4698 2.9701 41 1 11.7458 3.8003 5.6460 42 1 9.6466 2.8558 4.1500 43 1 9.1058 1.8630 1.9694 44 1 3.2979 2.6807 -1.8413 45 1 4.4806 1.3052 -1.9423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647191026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -78.045377 kcal Electronic energy + Delta-G solvation = -27662.432858 eV Core-core repulsion = 23772.598891 eV Total energy + Delta-G solvation = -3889.833967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.97392 -37.57999 -37.04942 -36.57452 -35.15735 -34.06001 -33.30485 -30.98305 -30.26870 -29.47361 -27.17549 -25.87295 -25.70537 -23.40444 -22.75031 -21.50647 -21.14067 -20.10829 -18.25523 -17.71251 -17.57664 -16.77513 -16.49843 -15.97969 -15.75877 -15.50873 -14.97658 -14.36981 -14.25276 -13.98089 -13.48395 -13.28216 -13.22999 -13.15912 -12.78703 -12.46982 -12.40715 -12.24173 -12.20851 -12.16487 -11.87721 -11.73607 -11.49811 -11.48233 -11.38667 -11.32275 -11.24355 -10.94236 -10.89790 -10.74888 -10.42541 -10.28396 -9.77590 -9.61929 -9.49559 -9.48859 -8.71784 -7.97366 -7.71260 -7.15376 -4.81466 1.14447 2.24481 2.86471 2.89634 2.91531 2.92328 3.51725 3.59511 3.64929 4.22369 4.44804 4.48597 4.56014 4.78899 4.82883 4.89354 4.91824 5.02837 5.14168 5.18313 5.29460 5.38697 5.51644 5.60311 5.66910 5.72333 5.76290 5.79299 5.84969 5.93941 5.99602 6.04940 6.06855 6.11018 6.37838 6.65930 6.67428 6.80277 6.98369 7.04533 7.18302 7.32555 7.41873 7.62738 7.76103 7.95571 8.30740 8.50180 8.64162 9.75427 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003055 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.430560 B = 9163.720880 C =10282.173943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.052 3.948 5 C -0.148 4.148 6 C 0.130 3.870 7 N -0.990 5.990 8 C 0.085 3.915 9 S 2.692 3.308 10 O -0.979 6.979 11 O -0.981 6.981 12 C -0.787 4.787 13 C 0.003 3.997 14 C -0.239 4.239 15 C 0.139 3.861 16 C -0.434 4.434 17 H 0.088 0.912 18 C 0.071 3.929 19 N -0.764 5.764 20 Si 0.918 3.082 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.184 4.184 25 C -0.016 4.016 26 C -0.162 4.162 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.289 0.711 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.329 -7.527 -4.676 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C -0.005 4.005 5 C -0.187 4.187 6 C 0.023 3.977 7 N -0.823 5.823 8 C -0.060 4.060 9 S 2.793 3.207 10 O -0.970 6.970 11 O -0.972 6.972 12 C -0.884 4.884 13 C -0.017 4.017 14 C -0.259 4.259 15 C 0.135 3.865 16 C -0.461 4.461 17 H 0.106 0.894 18 C -0.151 4.151 19 N -0.386 5.386 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.205 4.205 25 C -0.036 4.036 26 C -0.201 4.201 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.712 -7.512 -5.465 15.745 hybrid contribution 0.263 0.022 1.572 1.594 sum -12.450 -7.490 -3.894 15.042 Atomic orbital electron populations 1.21744 0.93996 1.02051 1.03067 1.22479 0.95453 0.84354 0.99872 1.87939 1.21141 1.25916 1.94605 1.24220 0.80527 0.98778 0.96990 1.23667 0.97700 0.97922 0.99412 1.21433 0.83468 0.96687 0.96112 1.57570 1.21396 1.19862 1.83488 1.21635 1.03392 0.81144 0.99866 1.01382 0.71566 0.72667 0.75133 1.93485 1.58075 1.59172 1.86265 1.93467 1.85394 1.54954 1.63364 1.29172 1.27697 1.07745 1.23750 1.20139 0.93901 0.92049 0.95590 1.21012 1.10619 0.99566 0.94744 1.17856 0.86629 0.90747 0.91263 1.19959 1.09699 1.15200 1.01250 0.89420 1.26158 0.94368 0.93004 1.01576 1.69829 1.06655 1.23883 1.38252 0.86130 0.78606 0.80439 0.80690 1.18799 1.19846 1.18172 1.21371 1.06142 0.96009 0.96958 1.20239 0.93410 0.96942 0.93040 1.23848 0.98296 1.00632 0.97351 0.91330 0.91879 0.91942 0.93561 0.93501 0.88528 0.89880 0.88242 0.86352 0.92860 0.90323 0.91072 0.87865 0.88198 0.89922 0.85863 0.88031 0.88362 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.38 -4.36 10.35 -35.23 -0.36 -4.72 16 4 C 0.05 0.58 3.66 -25.93 -0.09 0.48 16 5 C -0.15 -1.80 7.24 -25.92 -0.19 -1.99 16 6 C 0.13 1.75 4.51 -67.12 -0.30 1.45 16 7 N -0.99 -14.95 3.40 -113.74 -0.39 -15.33 16 8 C 0.08 1.07 8.98 59.85 0.54 1.60 16 9 S 2.69 52.13 5.64 -107.50 -0.61 51.53 16 10 O -0.98 -20.95 16.21 -57.17 -0.93 -21.88 16 11 O -0.98 -20.65 15.92 -57.17 -0.91 -21.56 16 12 C -0.79 -17.23 6.00 -39.29 -0.24 -17.47 16 13 C 0.00 0.07 9.49 -39.66 -0.38 -0.30 16 14 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 15 C 0.14 3.49 5.59 -106.82 -0.60 2.89 16 16 C -0.43 -10.56 9.06 -37.74 -0.34 -10.90 16 17 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.64 5.15 -17.34 -0.09 1.55 16 19 N -0.76 -18.23 10.89 55.55 0.60 -17.62 16 20 Si 0.92 16.90 29.60 -169.99 -5.03 11.86 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 24 C -0.18 -4.58 8.71 -38.87 -0.34 -4.92 16 25 C -0.02 -0.37 9.49 -39.66 -0.38 -0.74 16 26 C -0.16 -1.84 7.34 -25.92 -0.19 -2.03 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.97 4.86 -51.93 -0.25 0.72 16 33 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.12 1.65 7.14 -51.93 -0.37 1.28 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.03 7.57 -51.92 -0.39 0.64 16 38 H 0.07 0.74 4.93 -51.93 -0.26 0.49 16 39 H 0.10 2.05 7.59 -52.49 -0.40 1.66 16 40 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 42 H 0.12 3.09 6.08 -52.49 -0.32 2.77 16 43 H 0.10 2.15 7.60 -52.49 -0.40 1.75 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -29.75 376.46 -10.88 -40.63 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.58 Total: 7.79 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: -2.35 Total: -36.37 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.22 Total: -32.96 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.20 Total: -48.16 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.61 Total: 51.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.75 -10.88 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647191026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.418 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds