Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47051 * 2 1 4 4 C 1.42905 * 114.00008 * 180.02562 * 3 2 1 5 5 C 1.53772 * 113.61524 * 210.00200 * 4 3 2 6 6 C 1.53785 * 87.08343 * 220.02007 * 5 4 3 7 7 N 1.46500 * 113.61281 * 270.88513 * 6 5 4 8 8 C 1.46500 * 119.99901 * 51.14591 * 7 6 5 9 9 S 1.65600 * 120.00096 * 231.14791 * 7 6 5 10 10 O 1.42098 * 106.40468 * 203.53837 * 9 7 6 11 11 O 1.42095 * 106.39991 * 336.46245 * 9 7 6 12 12 C 1.76201 * 107.21708 * 89.99979 * 9 7 6 13 13 C 1.38640 * 119.74780 * 269.72663 * 12 9 7 14 14 C 1.37621 * 120.24417 * 179.71905 * 13 12 9 15 15 C 1.40715 * 119.74613 * 0.57576 * 14 13 12 16 16 C 1.41400 * 120.24555 * 179.67769 * 15 14 13 17 17 H 1.07998 * 119.99672 * 23.39115 * 16 15 14 18 18 C 1.39937 * 120.00135 * 203.39660 * 16 15 14 19 19 N 1.30829 * 120.00134 * 17.94778 * 18 16 15 20 20 Si 1.86799 * 119.99937 * 197.94374 * 18 16 15 21 21 H 1.48493 * 109.47155 * 90.00073 * 20 18 16 22 22 H 1.48503 * 109.47258 * 210.00061 * 20 18 16 23 23 H 1.48500 * 109.47046 * 329.99920 * 20 18 16 24 24 C 1.40718 * 119.51259 * 359.70179 * 15 14 13 25 25 C 1.37618 * 119.74366 * 359.97438 * 24 15 14 26 26 C 1.53777 * 113.61291 * 112.50244 * 4 3 2 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46706 * 299.99737 * 1 2 3 29 29 H 1.08998 * 109.47467 * 59.99617 * 1 2 3 30 30 H 1.09004 * 109.46932 * 240.00585 * 2 1 3 31 31 H 1.08998 * 109.47467 * 120.00383 * 2 1 3 32 32 H 1.08997 * 112.90657 * 341.25566 * 4 3 2 33 33 H 1.09002 * 113.61803 * 105.47270 * 5 4 3 34 34 H 1.09004 * 113.61826 * 334.56406 * 5 4 3 35 35 H 1.08992 * 113.61696 * 139.98457 * 6 5 4 36 36 H 1.09003 * 109.47328 * 83.77410 * 8 7 6 37 37 H 1.09008 * 109.47233 * 203.77219 * 8 7 6 38 38 H 1.08993 * 109.47771 * 323.77193 * 8 7 6 39 39 H 1.07993 * 119.87514 * 359.97438 * 13 12 9 40 40 H 1.08004 * 120.12402 * 180.27551 * 14 13 12 41 41 H 0.96999 * 119.99611 * 180.02562 * 19 18 16 42 42 H 1.07992 * 120.12658 * 179.97438 * 24 15 14 43 43 H 1.07997 * 119.87790 * 180.02562 * 25 24 15 44 44 H 1.09000 * 113.61800 * 25.43813 * 26 4 3 45 45 H 1.09000 * 113.61670 * 254.53185 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9489 2.7250 0.7039 6 6 4.9896 2.8314 -0.4233 7 7 6.2319 2.1064 -0.1453 8 6 6.1833 0.7029 0.2719 9 16 7.6912 2.8733 -0.3027 10 8 8.6584 1.8551 -0.5195 11 8 7.4825 3.9517 -1.2042 12 6 8.0714 3.5964 1.2584 13 6 7.6586 4.8904 1.5360 14 6 7.9450 5.4631 2.7542 15 6 8.6702 4.7344 3.7150 16 6 8.9762 5.3150 4.9675 17 1 8.3715 6.1241 5.3497 18 6 10.0625 4.8413 5.7117 19 7 10.9930 4.1290 5.1300 20 14 10.1841 5.2262 7.5355 21 1 9.5049 4.1588 8.3130 22 1 11.6133 5.2947 7.9328 23 1 9.5307 6.5310 7.8107 24 6 9.0891 3.4239 3.4201 25 6 8.7857 2.8688 2.1979 26 6 4.0018 2.0465 -1.3025 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9291 0.5458 0.3217 33 1 4.3850 2.5315 1.6839 34 1 3.2305 3.5447 0.7136 35 1 5.1615 3.8524 -0.7640 36 1 6.1081 0.0645 -0.6084 37 1 7.0907 0.4561 0.8232 38 1 5.3151 0.5438 0.9113 39 1 7.1066 5.4496 0.7951 40 1 7.6186 6.4698 2.9701 41 1 11.7458 3.8003 5.6460 42 1 9.6466 2.8558 4.1500 43 1 9.1058 1.8630 1.9694 44 1 3.2979 2.6807 -1.8413 45 1 4.4806 1.3052 -1.9423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647191026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -95.870291 kcal Electronic energy + Delta-G solvation = -27663.205805 eV Core-core repulsion = 23772.598891 eV Total energy + Delta-G solvation = -3890.606914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.92725 -39.38052 -38.22904 -37.90920 -36.81120 -35.81860 -34.36604 -32.07341 -31.66896 -31.29106 -28.22067 -27.63019 -26.66879 -24.31486 -23.51943 -23.26828 -22.94340 -21.22594 -19.61983 -19.44006 -18.87067 -18.30744 -17.67557 -17.24734 -17.02742 -16.50962 -16.22827 -15.85601 -15.53585 -15.22222 -15.15831 -14.84253 -14.21793 -14.11207 -14.05041 -13.96937 -13.69431 -13.54989 -13.42342 -13.15992 -13.12455 -13.07504 -12.99170 -12.96833 -12.88981 -12.67875 -12.58155 -12.38383 -12.00632 -11.77651 -11.74651 -11.54772 -11.33834 -11.22146 -11.18825 -10.30843 -9.95217 -9.76289 -9.55053 -8.87777 -6.65682 -0.39272 0.48319 1.05650 1.35294 1.42894 1.50865 2.09258 2.12620 2.51389 2.83010 2.91190 3.40327 3.50122 3.59851 3.61706 3.90336 3.95469 3.96265 4.24647 4.28844 4.31962 4.36065 4.40425 4.55312 4.62712 4.71782 4.83058 4.86328 4.86519 4.91764 4.93094 5.01539 5.03689 5.06702 5.10372 5.12056 5.24030 5.31257 5.33760 5.51489 5.59266 5.70499 5.79841 5.93571 6.14984 6.40051 6.48652 6.67839 6.80931 8.06815 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003055 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.430560 B = 9163.720880 C =10282.173943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.394 6.394 4 C 0.059 3.941 5 C -0.148 4.148 6 C 0.116 3.884 7 N -0.981 5.981 8 C 0.073 3.927 9 S 2.720 3.280 10 O -0.999 6.999 11 O -0.997 6.997 12 C -0.797 4.797 13 C 0.000 4.000 14 C -0.257 4.257 15 C 0.111 3.889 16 C -0.464 4.464 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.798 5.798 20 Si 0.993 3.007 21 H -0.258 1.258 22 H -0.266 1.266 23 H -0.253 1.253 24 C -0.209 4.209 25 C -0.020 4.020 26 C -0.152 4.152 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.298 0.702 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 -8.509 -4.777 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.313 6.313 4 C 0.002 3.998 5 C -0.187 4.187 6 C 0.009 3.991 7 N -0.818 5.818 8 C -0.072 4.072 9 S 2.818 3.182 10 O -0.989 6.989 11 O -0.988 6.988 12 C -0.890 4.890 13 C -0.020 4.020 14 C -0.277 4.277 15 C 0.107 3.893 16 C -0.491 4.491 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.421 5.421 20 Si 0.812 3.188 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.177 1.177 24 C -0.229 4.229 25 C -0.040 4.040 26 C -0.192 4.192 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.175 -8.478 -5.551 17.425 hybrid contribution 0.622 0.257 1.460 1.607 sum -13.553 -8.221 -4.091 16.371 Atomic orbital electron populations 1.21763 0.93123 1.03224 1.02590 1.22705 0.96261 0.83271 1.00733 1.87920 1.21092 1.27684 1.94646 1.24155 0.80768 0.98606 0.96314 1.23661 0.97401 0.99089 0.98584 1.21647 0.83059 0.96661 0.97754 1.57169 1.20491 1.20727 1.83391 1.21951 1.04153 0.79652 1.01394 1.00526 0.72023 0.72009 0.73681 1.93454 1.59869 1.59478 1.86122 1.93440 1.85935 1.56070 1.63325 1.29694 1.26770 1.07917 1.24623 1.20422 0.93609 0.92364 0.95587 1.21245 1.11048 1.00208 0.95221 1.18208 0.87535 0.91262 0.92294 1.20241 1.10799 1.16187 1.01868 0.88986 1.27053 0.93308 0.92321 1.05938 1.69867 1.07349 1.24662 1.40225 0.85021 0.78880 0.80331 0.74528 1.18204 1.18986 1.17667 1.21398 1.07371 0.96357 0.97793 1.20442 0.93172 0.97635 0.92767 1.23808 0.97455 1.00498 0.97401 0.89365 0.92508 0.92259 0.92528 0.92762 0.87262 0.90763 0.87770 0.87121 0.90536 0.91089 0.88768 0.85799 0.87106 0.89033 0.86957 0.86756 0.87541 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.05 0.71 6.50 71.98 0.47 1.17 16 3 O -0.39 -8.19 10.35 -148.98 -1.54 -9.74 16 4 C 0.06 1.16 3.66 31.12 0.11 1.27 16 5 C -0.15 -3.38 7.24 31.12 0.23 -3.15 16 6 C 0.12 2.91 4.51 45.52 0.21 3.11 16 7 N -0.98 -28.05 3.40 -513.75 -1.75 -29.80 16 8 C 0.07 1.66 8.98 127.77 1.15 2.81 16 9 S 2.72 103.16 5.64 -56.49 -0.32 102.84 16 10 O -1.00 -41.91 16.21 -128.00 -2.07 -43.99 16 11 O -1.00 -41.08 15.92 -128.00 -2.04 -43.11 16 12 C -0.80 -35.00 6.00 22.46 0.13 -34.87 16 13 C 0.00 0.00 9.49 22.22 0.21 0.21 16 14 C -0.26 -12.32 9.80 22.73 0.22 -12.10 16 15 C 0.11 5.74 5.59 -21.29 -0.12 5.62 16 16 C -0.46 -23.20 9.06 23.46 0.21 -22.98 16 17 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 18 C 0.03 1.54 5.15 85.25 0.44 1.97 16 19 N -0.80 -38.97 10.89 21.82 0.24 -38.73 16 20 Si 0.99 34.49 29.60 68.60 2.03 36.52 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 22 H -0.27 -8.79 7.11 99.48 0.71 -8.08 16 23 H -0.25 -8.51 7.11 99.48 0.71 -7.81 16 24 C -0.21 -10.74 8.71 22.73 0.20 -10.54 16 25 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 26 C -0.15 -3.06 7.34 31.12 0.23 -2.84 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 1.84 4.86 -2.39 -0.01 1.83 16 33 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.11 2.96 7.14 -2.39 -0.02 2.94 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.76 7.57 -2.38 -0.02 1.74 16 38 H 0.09 1.71 4.93 -2.39 -0.01 1.70 16 39 H 0.12 4.88 7.59 -2.91 -0.02 4.86 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 41 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16 42 H 0.11 5.90 6.08 -2.91 -0.02 5.88 16 43 H 0.11 4.92 7.60 -2.91 -0.02 4.89 16 44 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 Total: -1.00 -64.36 376.46 0.18 -64.19 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.99 Total: 34.01 kcal Atomic # 6 Polarization: -76.83 SS G_CDS: 4.64 Total: -72.20 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.51 Total: -68.53 kcal Atomic # 8 Polarization: -91.19 SS G_CDS: -5.65 Total: -96.84 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Atomic # 16 Polarization: 103.16 SS G_CDS: -0.32 Total: 102.84 kcal Total: -64.36 0.18 -64.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647191026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.682 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds