Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46701 * 2 1 4 4 O 1.42901 * 109.47153 * 119.99928 * 2 1 3 5 5 C 1.42896 * 113.99951 * 90.00181 * 4 2 1 6 6 H 1.08998 * 112.84791 * 341.19329 * 5 4 2 7 7 C 1.53777 * 113.61368 * 112.50243 * 5 4 2 8 8 C 1.53778 * 87.08266 * 139.98156 * 7 5 4 9 9 H 1.08999 * 113.69416 * 89.12150 * 8 7 5 10 10 N 1.46506 * 113.61603 * 220.01938 * 8 7 5 11 11 S 1.65595 * 120.00108 * 242.49576 * 10 8 7 12 12 O 1.42106 * 106.40041 * 311.46064 * 11 10 8 13 13 O 1.42094 * 106.40303 * 178.53915 * 11 10 8 14 14 C 1.76208 * 107.21711 * 64.99631 * 11 10 8 15 15 C 1.38630 * 119.74372 * 90.00149 * 14 11 10 16 16 C 1.37623 * 120.24117 * 180.27329 * 15 14 11 17 17 C 1.40707 * 119.74849 * 359.52215 * 16 15 14 18 18 C 1.41400 * 120.24843 * 180.22492 * 17 16 15 19 19 H 1.07994 * 120.00480 * 204.52708 * 18 17 16 20 20 C 1.39950 * 119.99509 * 24.53120 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.72383 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.72017 * 20 18 17 23 23 H 1.48499 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46931 * 119.99981 * 22 20 18 25 25 H 1.48490 * 109.47155 * 239.99623 * 22 20 18 26 26 C 1.40715 * 119.51064 * 0.47652 * 17 16 15 27 27 C 1.37618 * 119.74364 * 359.74989 * 26 17 16 28 28 C 1.53777 * 87.08080 * 334.56551 * 8 7 5 29 29 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46948 * 299.99772 * 1 2 3 31 31 H 1.08992 * 109.47507 * 60.00245 * 1 2 3 32 32 H 1.08997 * 109.46948 * 240.00228 * 2 1 3 33 33 H 1.09002 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47569 * 299.99948 * 3 2 1 35 35 H 1.09002 * 109.47568 * 60.00088 * 3 2 1 36 36 H 1.09000 * 113.61614 * 25.43043 * 7 5 4 37 37 H 1.09001 * 113.61407 * 254.53034 * 7 5 4 38 38 H 0.97003 * 119.99721 * 62.49212 * 10 8 7 39 39 H 1.08001 * 119.88189 * 0.02562 * 15 14 11 40 40 H 1.08002 * 120.12205 * 179.72192 * 16 15 14 41 41 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.12804 * 179.73261 * 26 17 16 43 43 H 1.08002 * 119.87235 * 180.02562 * 27 26 17 44 44 H 1.09001 * 113.62035 * 139.98231 * 28 8 7 45 45 H 1.09001 * 113.61810 * 270.80368 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0781 0.9886 6 1 1.6627 -2.4735 0.1267 7 6 3.6752 -2.5089 1.0480 8 6 3.2025 -3.7391 1.8403 9 1 2.9400 -4.5903 1.2121 10 7 4.0913 -4.1015 2.9471 11 16 4.8579 -5.5693 2.9468 12 8 3.8626 -6.5418 2.6586 13 8 5.6610 -5.6028 4.1186 14 6 5.9707 -5.5764 1.5805 15 6 7.2711 -5.1269 1.7503 16 6 8.1471 -5.1227 0.6889 17 6 7.7213 -5.5862 -0.5696 18 6 8.6140 -5.5910 -1.6662 19 1 8.2302 -5.5564 -2.6751 20 6 9.9948 -5.6406 -1.4441 21 7 10.4571 -6.0264 -0.2827 22 14 11.1779 -5.1562 -2.8062 23 1 10.4081 -4.7603 -4.0128 24 1 12.0116 -4.0133 -2.3544 25 1 12.0544 -6.3092 -3.1338 26 6 6.3991 -6.0400 -0.7301 27 6 5.5389 -6.0309 0.3441 28 6 1.9911 -2.8967 2.2736 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.3047 -1.8325 1.6263 37 1 4.0983 -2.7532 0.0736 38 1 4.2308 -3.4816 3.6800 39 1 7.5968 -4.7751 2.7181 40 1 9.1584 -4.7679 0.8222 41 1 11.4142 -6.0604 -0.1287 42 1 6.0605 -6.3939 -1.6927 43 1 4.5238 -6.3791 0.2233 44 1 1.0545 -3.4541 2.2887 45 1 2.1596 -2.3275 3.1877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647225046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = -99.769792 kcal Electronic energy + Delta-G solvation = -27280.607624 eV Core-core repulsion = 23389.831615 eV Total energy + Delta-G solvation = -3890.776009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.67337 -37.58362 -37.22428 -36.43593 -35.12175 -34.04449 -33.08894 -31.59370 -30.26113 -29.47793 -27.47059 -25.85869 -25.65308 -23.87913 -21.50723 -21.47207 -21.18384 -20.02569 -18.95415 -17.63465 -17.42962 -16.97173 -16.49135 -15.83154 -15.50256 -15.24533 -14.95692 -14.57242 -14.16856 -14.10944 -13.49201 -13.41530 -13.20764 -12.87433 -12.60926 -12.47297 -12.44679 -12.39423 -12.20418 -11.98723 -11.79709 -11.73761 -11.46604 -11.43217 -11.33582 -11.26582 -11.21466 -11.01250 -10.89060 -10.75854 -10.64433 -10.41492 -9.76788 -9.63630 -9.49720 -9.48432 -9.01140 -7.96215 -7.71040 -7.14488 -4.80654 1.25533 2.25110 2.86631 2.88841 2.92076 2.94405 3.46982 3.65543 3.82135 4.24101 4.46231 4.52111 4.57547 4.72540 4.78575 4.85897 4.91709 5.00396 5.18301 5.21897 5.34889 5.37176 5.46366 5.54862 5.61451 5.72842 5.76284 5.81793 5.93915 5.97034 6.01413 6.04316 6.11124 6.14314 6.47694 6.67314 6.70397 6.91241 7.03931 7.21920 7.29293 7.34071 7.42156 7.63403 7.76469 7.96257 8.31728 8.50842 8.64562 9.77036 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003340 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.155205 B = 8381.398436 C =10438.648315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.367 6.367 5 C 0.062 3.938 6 H 0.089 0.911 7 C -0.167 4.167 8 C 0.138 3.862 9 H 0.117 0.883 10 N -1.111 6.111 11 S 2.691 3.309 12 O -0.986 6.986 13 O -0.984 6.984 14 C -0.785 4.785 15 C -0.013 4.013 16 C -0.184 4.184 17 C 0.140 3.860 18 C -0.436 4.436 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.764 5.764 22 Si 0.916 3.084 23 H -0.257 1.257 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.238 4.238 27 C 0.000 4.000 28 C -0.141 4.141 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.289 0.711 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 10.863 -0.910 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.286 6.286 5 C 0.004 3.996 6 H 0.107 0.893 7 C -0.207 4.207 8 C 0.029 3.971 9 H 0.135 0.865 10 N -0.865 5.865 11 S 2.790 3.210 12 O -0.976 6.976 13 O -0.975 6.975 14 C -0.881 4.881 15 C -0.033 4.033 16 C -0.204 4.204 17 C 0.136 3.864 18 C -0.463 4.463 19 H 0.105 0.895 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.195 1.195 26 C -0.259 4.259 27 C -0.020 4.020 28 C -0.180 4.180 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.244 0.756 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.326 10.081 -0.085 15.924 hybrid contribution 1.045 0.547 -1.103 1.615 sum -11.282 10.629 -1.188 15.545 Atomic orbital electron populations 1.22326 0.96201 1.02328 1.02364 1.22131 0.93401 0.93917 0.88540 1.21859 1.02013 0.94595 1.02250 1.87977 1.85824 1.19637 1.35129 1.23557 0.96668 0.81149 0.98268 0.89293 1.24029 0.96826 0.97801 1.02011 1.21805 0.90104 0.96759 0.88398 0.86537 1.55685 1.60793 1.38552 1.31426 1.01284 0.73273 0.72236 0.74219 1.93482 1.60045 1.57850 1.86263 1.93497 1.69875 1.86046 1.48094 1.29118 1.10949 1.32591 1.15417 1.20243 0.91460 0.94149 0.97488 1.21337 0.99756 1.06082 0.93223 1.17844 0.91227 0.84562 0.92734 1.19962 0.90557 1.40931 0.94876 0.89452 1.26145 0.99875 0.92010 0.97019 1.69833 1.16562 1.28823 1.23454 0.86115 0.79577 0.79317 0.81049 1.17996 1.19244 1.19525 1.21010 0.95984 1.11182 0.97714 1.20141 0.97298 0.92992 0.91567 1.23627 0.98698 0.97104 0.98604 0.92457 0.91915 0.91860 0.92040 0.91856 0.91463 0.91951 0.88577 0.90263 0.75576 0.87926 0.86051 0.89989 0.88263 0.87960 0.90462 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.53 37.16 0.35 -0.99 16 2 C 0.08 0.71 3.22 -26.73 -0.09 0.63 16 3 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 4 O -0.37 -4.18 10.00 -35.23 -0.35 -4.53 16 5 C 0.06 0.67 4.13 -25.92 -0.11 0.56 16 6 H 0.09 0.83 7.77 -51.93 -0.40 0.42 16 7 C -0.17 -2.08 7.71 -25.92 -0.20 -2.28 16 8 C 0.14 1.79 4.42 -67.12 -0.30 1.49 16 9 H 0.12 1.52 7.77 -51.93 -0.40 1.12 16 10 N -1.11 -16.14 5.79 -4.20 -0.02 -16.16 16 11 S 2.69 51.28 5.70 -107.50 -0.61 50.67 16 12 O -0.99 -20.62 16.78 -57.17 -0.96 -21.58 16 13 O -0.98 -21.21 17.26 -57.17 -0.99 -22.20 16 14 C -0.78 -16.97 5.97 -39.29 -0.23 -17.21 16 15 C -0.01 -0.30 9.49 -39.66 -0.38 -0.68 16 16 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 17 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 18 C -0.44 -10.58 9.06 -37.74 -0.34 -10.92 16 19 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 20 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 21 N -0.76 -18.31 10.95 55.55 0.61 -17.70 16 22 Si 0.92 16.90 29.59 -169.99 -5.03 11.87 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 26 C -0.24 -5.50 9.80 -38.87 -0.38 -5.88 16 27 C 0.00 0.00 9.49 -39.66 -0.38 -0.37 16 28 C -0.14 -1.52 7.70 -25.92 -0.20 -1.72 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.54 7.72 -51.93 -0.40 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.41 5.08 8.94 -34.47 -0.31 4.78 16 39 H 0.10 2.22 7.60 -52.49 -0.40 1.82 16 40 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 41 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.10 1.97 7.60 -52.49 -0.40 1.57 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -30.14 386.12 -11.29 -41.43 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.84 Total: 11.07 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: -2.91 Total: -38.68 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.58 Total: -33.86 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.30 Total: -48.32 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -0.61 Total: 50.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.14 -11.29 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647225046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.341 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds