Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46701 * 2 1 4 4 O 1.42901 * 109.47153 * 119.99928 * 2 1 3 5 5 C 1.42896 * 113.99951 * 90.00181 * 4 2 1 6 6 H 1.08998 * 112.84791 * 341.19329 * 5 4 2 7 7 C 1.53777 * 113.61368 * 112.50243 * 5 4 2 8 8 C 1.53778 * 87.08266 * 139.98156 * 7 5 4 9 9 H 1.08999 * 113.69416 * 89.12150 * 8 7 5 10 10 N 1.46506 * 113.61603 * 220.01938 * 8 7 5 11 11 S 1.65595 * 120.00108 * 242.49576 * 10 8 7 12 12 O 1.42106 * 106.40041 * 311.46064 * 11 10 8 13 13 O 1.42094 * 106.40303 * 178.53915 * 11 10 8 14 14 C 1.76208 * 107.21711 * 64.99631 * 11 10 8 15 15 C 1.38630 * 119.74372 * 90.00149 * 14 11 10 16 16 C 1.37623 * 120.24117 * 180.27329 * 15 14 11 17 17 C 1.40707 * 119.74849 * 359.52215 * 16 15 14 18 18 C 1.41400 * 120.24843 * 180.22492 * 17 16 15 19 19 H 1.07994 * 120.00480 * 204.52708 * 18 17 16 20 20 C 1.39950 * 119.99509 * 24.53120 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.72383 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.72017 * 20 18 17 23 23 H 1.48499 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46931 * 119.99981 * 22 20 18 25 25 H 1.48490 * 109.47155 * 239.99623 * 22 20 18 26 26 C 1.40715 * 119.51064 * 0.47652 * 17 16 15 27 27 C 1.37618 * 119.74364 * 359.74989 * 26 17 16 28 28 C 1.53777 * 87.08080 * 334.56551 * 8 7 5 29 29 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46948 * 299.99772 * 1 2 3 31 31 H 1.08992 * 109.47507 * 60.00245 * 1 2 3 32 32 H 1.08997 * 109.46948 * 240.00228 * 2 1 3 33 33 H 1.09002 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47569 * 299.99948 * 3 2 1 35 35 H 1.09002 * 109.47568 * 60.00088 * 3 2 1 36 36 H 1.09000 * 113.61614 * 25.43043 * 7 5 4 37 37 H 1.09001 * 113.61407 * 254.53034 * 7 5 4 38 38 H 0.97003 * 119.99721 * 62.49212 * 10 8 7 39 39 H 1.08001 * 119.88189 * 0.02562 * 15 14 11 40 40 H 1.08002 * 120.12205 * 179.72192 * 16 15 14 41 41 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.12804 * 179.73261 * 26 17 16 43 43 H 1.08002 * 119.87235 * 180.02562 * 27 26 17 44 44 H 1.09001 * 113.62035 * 139.98231 * 28 8 7 45 45 H 1.09001 * 113.61810 * 270.80368 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0781 0.9886 6 1 1.6627 -2.4735 0.1267 7 6 3.6752 -2.5089 1.0480 8 6 3.2025 -3.7391 1.8403 9 1 2.9400 -4.5903 1.2121 10 7 4.0913 -4.1015 2.9471 11 16 4.8579 -5.5693 2.9468 12 8 3.8626 -6.5418 2.6586 13 8 5.6610 -5.6028 4.1186 14 6 5.9707 -5.5764 1.5805 15 6 7.2711 -5.1269 1.7503 16 6 8.1471 -5.1227 0.6889 17 6 7.7213 -5.5862 -0.5696 18 6 8.6140 -5.5910 -1.6662 19 1 8.2302 -5.5564 -2.6751 20 6 9.9948 -5.6406 -1.4441 21 7 10.4571 -6.0264 -0.2827 22 14 11.1779 -5.1562 -2.8062 23 1 10.4081 -4.7603 -4.0128 24 1 12.0116 -4.0133 -2.3544 25 1 12.0544 -6.3092 -3.1338 26 6 6.3991 -6.0400 -0.7301 27 6 5.5389 -6.0309 0.3441 28 6 1.9911 -2.8967 2.2736 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.3047 -1.8325 1.6263 37 1 4.0983 -2.7532 0.0736 38 1 4.2308 -3.4816 3.6800 39 1 7.5968 -4.7751 2.7181 40 1 9.1584 -4.7679 0.8222 41 1 11.4142 -6.0604 -0.1287 42 1 6.0605 -6.3939 -1.6927 43 1 4.5238 -6.3791 0.2233 44 1 1.0545 -3.4541 2.2887 45 1 2.1596 -2.3275 3.1877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647225046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -118.629020 kcal Electronic energy + Delta-G solvation = -27281.425421 eV Core-core repulsion = 23389.831615 eV Total energy + Delta-G solvation = -3891.593806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.58002 -39.36800 -38.23421 -37.94642 -36.78135 -35.79880 -34.06529 -32.52017 -32.05820 -31.28439 -28.07800 -27.61778 -26.60807 -24.86702 -23.27476 -22.97069 -22.17594 -21.04326 -20.38157 -19.41891 -18.75580 -18.11612 -18.07741 -17.19699 -16.83526 -16.35145 -15.99266 -15.79385 -15.63951 -15.23179 -15.00856 -14.93092 -14.35980 -14.09471 -13.98084 -13.64667 -13.57642 -13.48967 -13.37266 -13.12426 -13.06380 -13.03095 -13.01770 -12.96220 -12.86651 -12.60552 -12.57197 -12.19481 -11.99830 -11.83488 -11.67628 -11.53096 -11.50166 -11.30115 -11.20350 -10.34360 -10.23714 -9.77160 -9.53619 -8.86908 -6.64316 -0.29733 0.49728 1.07018 1.35535 1.41528 1.52897 2.10962 2.22628 2.52577 2.84905 2.94902 3.53408 3.54034 3.62254 3.66799 3.91869 3.94154 4.08156 4.19092 4.28170 4.31415 4.35473 4.36407 4.53345 4.78986 4.83448 4.87457 4.88155 4.93377 4.95370 4.96803 4.99484 5.09486 5.10516 5.15207 5.25003 5.32454 5.37313 5.47404 5.53476 5.60727 5.77606 5.94086 6.16347 6.18222 6.45077 6.50375 6.69243 6.82306 8.08405 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003340 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.155205 B = 8381.398436 C =10438.648315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 C -0.149 4.149 4 O -0.383 6.383 5 C 0.070 3.930 6 H 0.107 0.893 7 C -0.171 4.171 8 C 0.124 3.876 9 H 0.119 0.881 10 N -1.095 6.095 11 S 2.723 3.277 12 O -0.999 6.999 13 O -1.009 7.009 14 C -0.793 4.793 15 C -0.020 4.020 16 C -0.208 4.208 17 C 0.113 3.887 18 C -0.466 4.466 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.800 5.800 22 Si 0.992 3.008 23 H -0.251 1.251 24 H -0.262 1.262 25 H -0.264 1.264 26 C -0.254 4.254 27 C 0.001 3.999 28 C -0.131 4.131 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.424 0.576 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.297 0.703 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 11.721 -1.626 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 C -0.206 4.206 4 O -0.302 6.302 5 C 0.011 3.989 6 H 0.125 0.875 7 C -0.211 4.211 8 C 0.016 3.984 9 H 0.136 0.864 10 N -0.854 5.854 11 S 2.819 3.181 12 O -0.989 6.989 13 O -0.999 6.999 14 C -0.886 4.886 15 C -0.040 4.040 16 C -0.229 4.229 17 C 0.109 3.891 18 C -0.493 4.493 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.423 5.423 22 Si 0.811 3.189 23 H -0.174 1.174 24 H -0.187 1.187 25 H -0.188 1.188 26 C -0.274 4.274 27 C -0.019 4.019 28 C -0.170 4.170 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.146 0.854 44 H 0.113 0.887 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.836 10.940 -0.812 17.657 hybrid contribution 1.400 0.322 -0.796 1.643 sum -12.436 11.262 -1.608 16.854 Atomic orbital electron populations 1.22288 0.94933 1.02605 1.02960 1.22349 0.94463 0.94130 0.87927 1.21875 1.01326 0.94335 1.03094 1.87957 1.86050 1.19855 1.36368 1.23522 0.95203 0.81247 0.98919 0.87530 1.24033 0.98188 0.97612 1.01269 1.22105 0.90948 0.97221 0.88120 0.86353 1.55256 1.60180 1.37487 1.32445 1.00334 0.72403 0.72742 0.72625 1.93463 1.59962 1.59302 1.86205 1.93460 1.70828 1.86845 1.48789 1.29603 1.11153 1.31230 1.16584 1.20425 0.92080 0.94086 0.97447 1.21344 0.99666 1.07654 0.94207 1.18191 0.92463 0.85294 0.93142 1.20253 0.91675 1.42381 0.94993 0.88903 1.27045 1.01071 0.91123 0.99380 1.69875 1.17509 1.29522 1.25435 0.85003 0.77040 0.79040 0.77819 1.17424 1.18669 1.18824 1.21252 0.95719 1.11517 0.98954 1.20444 0.98241 0.92107 0.91129 1.23576 0.98173 0.96509 0.98751 0.92334 0.92279 0.90319 0.91730 0.92940 0.89601 0.92150 0.89378 0.91218 0.74026 0.87100 0.87410 0.89141 0.86943 0.85398 0.88680 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.53 71.98 0.69 -1.55 16 2 C 0.07 1.13 3.22 30.60 0.10 1.23 16 3 C -0.15 -2.21 9.56 71.98 0.69 -1.52 16 4 O -0.38 -8.08 10.00 -148.98 -1.49 -9.57 16 5 C 0.07 1.36 4.13 31.12 0.13 1.49 16 6 H 0.11 1.70 7.77 -2.39 -0.02 1.68 16 7 C -0.17 -4.08 7.71 31.12 0.24 -3.84 16 8 C 0.12 2.98 4.42 45.51 0.20 3.19 16 9 H 0.12 2.85 7.77 -2.39 -0.02 2.83 16 10 N -1.10 -30.12 5.79 -167.20 -0.97 -31.09 16 11 S 2.72 100.83 5.70 -56.49 -0.32 100.51 16 12 O -1.00 -40.10 16.78 -128.00 -2.15 -42.25 16 13 O -1.01 -42.71 17.26 -128.00 -2.21 -44.92 16 14 C -0.79 -34.17 5.97 22.46 0.13 -34.03 16 15 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 16 C -0.21 -10.74 8.70 22.73 0.20 -10.54 16 17 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 18 C -0.47 -23.15 9.06 23.46 0.21 -22.94 16 19 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 20 C 0.03 1.53 5.14 85.26 0.44 1.97 16 21 N -0.80 -39.35 10.95 21.83 0.24 -39.11 16 22 Si 0.99 34.57 29.59 68.60 2.03 36.60 16 23 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 24 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 25 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 26 C -0.25 -11.84 9.80 22.73 0.22 -11.62 16 27 C 0.00 0.02 9.49 22.22 0.21 0.23 16 28 C -0.13 -2.49 7.70 31.12 0.24 -2.25 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.01 7.72 -2.39 -0.02 0.99 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.42 9.77 8.94 -96.74 -0.87 8.90 16 39 H 0.11 4.90 7.60 -2.91 -0.02 4.88 16 40 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 41 H 0.30 13.01 8.30 -92.70 -0.77 12.24 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.13 4.73 7.60 -2.91 -0.02 4.70 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.93 386.12 -0.95 -65.88 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: 0.13 Total: 39.22 kcal Atomic # 6 Polarization: -79.07 SS G_CDS: 3.79 Total: -75.28 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.73 Total: -70.20 kcal Atomic # 8 Polarization: -90.89 SS G_CDS: -5.85 Total: -96.74 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 100.83 SS G_CDS: -0.32 Total: 100.51 kcal Total: -64.93 -0.95 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647225046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.751 kcal (2) G-P(sol) polarization free energy of solvation -64.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds