Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.35904 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.38758 * 120.05922 * 359.72826 * 7 6 5 9 9 C 1.38121 * 119.94303 * 179.69478 * 8 7 6 10 10 C 1.38284 * 120.05670 * 0.60266 * 9 8 7 11 11 C 1.38245 * 120.11162 * 359.67148 * 10 9 8 12 12 C 1.50705 * 119.97268 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46925 * 269.97938 * 12 11 10 14 14 C 1.34773 * 119.99946 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99891 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00511 * 180.02562 * 14 13 12 17 17 S 1.80990 * 109.47491 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00145 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00309 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00189 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46891 * 89.99714 * 22 20 18 24 24 H 1.48496 * 109.47329 * 210.00028 * 22 20 18 25 25 H 1.48499 * 109.46895 * 330.00181 * 22 20 18 26 26 C 1.38173 * 120.05607 * 0.02881 * 11 10 9 27 27 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 1.08003 * 120.02200 * 359.97438 * 8 7 6 37 37 H 1.07998 * 119.96674 * 180.29445 * 9 8 7 38 38 H 1.08003 * 119.94493 * 179.69558 * 10 9 8 39 39 H 1.08999 * 109.46727 * 29.97964 * 12 11 10 40 40 H 1.08992 * 109.46868 * 149.98166 * 12 11 10 41 41 H 0.96999 * 120.00316 * 0.02562 * 13 12 11 42 42 H 1.09000 * 109.46970 * 300.00846 * 16 14 13 43 43 H 1.09000 * 109.46970 * 59.99706 * 16 14 13 44 44 H 0.97006 * 119.99735 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02728 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2930 3.6278 0.0000 8 6 5.6328 4.8482 -0.0057 9 6 6.3574 6.0241 0.0007 10 6 7.7397 5.9858 0.0002 11 6 8.3999 4.7712 0.0001 12 6 9.9065 4.7332 0.0001 13 7 10.3946 4.7204 -1.3811 14 6 11.7192 4.6874 -1.6274 15 8 12.5071 4.6678 -0.7055 16 6 12.2215 4.6749 -3.0482 17 16 14.0309 4.6306 -3.0482 18 6 14.3368 4.6236 -4.7834 19 1 13.5097 4.6436 -5.4777 20 6 15.6407 4.5912 -5.2581 21 7 16.6487 4.5663 -4.4120 22 14 15.9650 4.5831 -7.0977 23 1 16.0856 5.9806 -7.5853 24 1 17.2273 3.8515 -7.3746 25 1 14.8399 3.9107 -7.7957 26 6 7.6797 3.5921 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8892 33 1 3.8568 0.6438 0.8907 34 1 3.8364 3.1227 -0.8904 35 1 3.8359 3.1237 0.8896 36 1 4.5532 4.8786 -0.0106 37 1 5.8439 6.9742 0.0011 38 1 8.3045 6.9064 0.0002 39 1 10.2921 5.6139 0.5137 40 1 10.2472 3.8345 0.5142 41 1 9.7645 4.7365 -2.1184 42 1 11.8360 3.7943 -3.5620 43 1 11.8804 5.5736 -3.5620 44 1 17.5600 4.5441 -4.7438 45 1 8.1959 2.6435 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155520413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -104.739236 kcal Electronic energy + Delta-G solvation = -24779.000987 eV Core-core repulsion = 20888.009487 eV Total energy + Delta-G solvation = -3890.991500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60779 -39.22397 -38.59202 -37.89560 -34.65198 -33.59111 -32.40880 -31.67986 -30.35867 -29.17227 -27.74472 -26.16677 -25.53677 -25.22591 -22.96700 -22.39407 -21.17699 -20.36402 -18.43792 -17.70231 -17.14908 -17.14004 -16.35084 -16.26029 -16.19585 -16.08043 -15.84175 -15.39639 -15.06033 -14.78426 -14.37516 -14.16682 -13.90573 -13.81738 -13.43154 -13.04856 -12.87792 -12.84858 -12.55611 -12.46717 -12.25482 -11.99532 -11.84351 -11.71516 -11.64973 -11.17526 -11.10968 -11.04566 -11.00289 -10.74541 -10.28906 -9.80147 -9.59222 -9.10836 -9.05095 -8.88098 -8.53190 -8.21162 -6.47592 -6.19653 -3.89966 0.88927 1.12600 2.49001 3.04830 3.12177 3.23981 3.28071 3.31935 3.38469 3.47548 3.90104 4.22486 4.25152 4.33881 4.39639 4.46369 4.57332 4.65689 4.66800 4.75571 4.80374 4.80720 4.86173 5.00860 5.03071 5.11999 5.15542 5.17815 5.19758 5.43611 5.46142 5.53584 5.60973 5.72307 5.82091 5.92181 5.94791 6.09137 6.17313 6.30168 6.40435 6.52880 6.60153 7.04235 7.61699 7.73132 8.37335 8.62881 9.25736 10.87801 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.001566 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.293016 B =17879.490089 C =18965.429385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.064 3.936 6 O -0.312 6.312 7 C 0.127 3.873 8 C -0.205 4.205 9 C -0.082 4.082 10 C -0.137 4.137 11 C -0.062 4.062 12 C 0.161 3.839 13 N -0.734 5.734 14 C 0.532 3.468 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.132 4.132 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.400 0.600 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.054 -1.824 9.996 35.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.159 4.159 5 C -0.011 4.011 6 O -0.226 6.226 7 C 0.082 3.918 8 C -0.224 4.224 9 C -0.100 4.100 10 C -0.156 4.156 11 C -0.063 4.063 12 C 0.038 3.962 13 N -0.389 5.389 14 C 0.318 3.682 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.151 4.151 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -32.346 -2.241 11.577 34.428 hybrid contribution -1.536 0.471 -2.590 3.048 sum -33.882 -1.770 8.986 35.098 Atomic orbital electron populations 1.22778 0.80499 1.03108 1.00123 1.87878 1.20086 1.27482 1.95452 1.22315 0.93028 0.85168 1.00611 1.21373 0.92997 0.96093 1.05398 1.22582 0.78859 0.97995 1.01668 1.86056 1.18957 1.28820 1.88730 1.18922 0.91393 0.84721 0.96761 1.21262 1.00206 0.92217 1.08695 1.20938 0.93924 0.97633 0.97500 1.21070 0.94332 0.97644 1.02538 1.19738 0.95170 0.92536 0.98853 1.20141 0.87982 1.03442 0.84642 1.46043 1.07336 1.77921 1.07635 1.20329 0.81350 0.75119 0.91360 1.90707 1.54844 1.47559 1.46032 1.23531 1.06830 1.04991 0.95012 1.85387 0.91511 1.96657 1.09764 1.22877 0.95088 1.58872 0.91560 0.90928 1.24985 0.95037 0.94538 0.98973 1.70020 0.99055 1.46874 1.34355 0.86173 0.77903 0.78310 0.83144 1.20280 1.20750 1.19707 1.20392 0.90591 0.99155 1.04940 0.93884 0.89328 0.93905 0.92918 0.92874 0.89678 0.89722 0.91734 0.91772 0.85589 0.85565 0.85410 0.90392 0.90496 0.76659 0.89171 0.89193 0.92196 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.83 10.70 -35.23 -0.38 -3.21 16 3 C 0.07 0.34 5.94 37.16 0.22 0.56 16 4 C -0.12 -0.73 5.95 -26.73 -0.16 -0.89 16 5 C 0.06 0.39 4.74 37.16 0.18 0.56 16 6 O -0.31 -2.94 10.14 -19.44 -0.20 -3.14 16 7 C 0.13 1.23 6.69 -39.22 -0.26 0.97 16 8 C -0.20 -1.64 9.04 -39.43 -0.36 -2.00 16 9 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 10 C -0.14 -1.23 9.70 -39.56 -0.38 -1.62 16 11 C -0.06 -0.63 5.25 -104.64 -0.55 -1.18 16 12 C 0.16 1.95 5.80 -5.19 -0.03 1.92 16 13 N -0.73 -10.09 5.55 -61.47 -0.34 -10.44 16 14 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 15 O -0.52 -11.81 15.86 5.55 0.09 -11.73 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.13 -1.36 9.64 -39.43 -0.38 -1.74 16 27 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 35 H 0.06 0.30 7.67 -51.93 -0.40 -0.09 16 36 H 0.13 0.72 6.30 -52.48 -0.33 0.39 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.40 4.54 8.46 -40.82 -0.35 4.20 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -35.74 399.53 -8.91 -44.66 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.93 Total: -0.04 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.68 Total: -9.21 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.39 Total: -36.01 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.49 Total: -18.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.74 -8.91 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155520413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.084 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds