Wall clock time and date at job start Sat Apr 11 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.35904 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.38758 * 120.05922 * 359.72826 * 7 6 5 9 9 C 1.38121 * 119.94303 * 179.69478 * 8 7 6 10 10 C 1.38284 * 120.05670 * 0.60266 * 9 8 7 11 11 C 1.38245 * 120.11162 * 359.67148 * 10 9 8 12 12 C 1.50705 * 119.97268 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46925 * 269.97938 * 12 11 10 14 14 C 1.34773 * 119.99946 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99891 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00511 * 180.02562 * 14 13 12 17 17 S 1.80990 * 109.47491 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00145 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00309 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00189 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46891 * 89.99714 * 22 20 18 24 24 H 1.48496 * 109.47329 * 210.00028 * 22 20 18 25 25 H 1.48499 * 109.46895 * 330.00181 * 22 20 18 26 26 C 1.38173 * 120.05607 * 0.02881 * 11 10 9 27 27 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 1.08003 * 120.02200 * 359.97438 * 8 7 6 37 37 H 1.07998 * 119.96674 * 180.29445 * 9 8 7 38 38 H 1.08003 * 119.94493 * 179.69558 * 10 9 8 39 39 H 1.08999 * 109.46727 * 29.97964 * 12 11 10 40 40 H 1.08992 * 109.46868 * 149.98166 * 12 11 10 41 41 H 0.96999 * 120.00316 * 0.02562 * 13 12 11 42 42 H 1.09000 * 109.46970 * 300.00846 * 16 14 13 43 43 H 1.09000 * 109.46970 * 59.99706 * 16 14 13 44 44 H 0.97006 * 119.99735 * 180.02562 * 21 20 18 45 45 H 1.07998 * 120.02728 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2930 3.6278 0.0000 8 6 5.6328 4.8482 -0.0057 9 6 6.3574 6.0241 0.0007 10 6 7.7397 5.9858 0.0002 11 6 8.3999 4.7712 0.0001 12 6 9.9065 4.7332 0.0001 13 7 10.3946 4.7204 -1.3811 14 6 11.7192 4.6874 -1.6274 15 8 12.5071 4.6678 -0.7055 16 6 12.2215 4.6749 -3.0482 17 16 14.0309 4.6306 -3.0482 18 6 14.3368 4.6236 -4.7834 19 1 13.5097 4.6436 -5.4777 20 6 15.6407 4.5912 -5.2581 21 7 16.6487 4.5663 -4.4120 22 14 15.9650 4.5831 -7.0977 23 1 16.0856 5.9806 -7.5853 24 1 17.2273 3.8515 -7.3746 25 1 14.8399 3.9107 -7.7957 26 6 7.6797 3.5921 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8892 33 1 3.8568 0.6438 0.8907 34 1 3.8364 3.1227 -0.8904 35 1 3.8359 3.1237 0.8896 36 1 4.5532 4.8786 -0.0106 37 1 5.8439 6.9742 0.0011 38 1 8.3045 6.9064 0.0002 39 1 10.2921 5.6139 0.5137 40 1 10.2472 3.8345 0.5142 41 1 9.7645 4.7365 -2.1184 42 1 11.8360 3.7943 -3.5620 43 1 11.8804 5.5736 -3.5620 44 1 17.5600 4.5441 -4.7438 45 1 8.1959 2.6435 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155520413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:09 Heat of formation + Delta-G solvation = -129.019154 kcal Electronic energy + Delta-G solvation = -24780.053843 eV Core-core repulsion = 20888.009487 eV Total energy + Delta-G solvation = -3892.044356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.31128 -40.54941 -39.12655 -38.58768 -35.83447 -34.57780 -34.08329 -32.69201 -31.14358 -30.48319 -28.13050 -27.72077 -26.90070 -25.91994 -23.61789 -22.94690 -21.84356 -21.80429 -19.91053 -18.96739 -17.78424 -17.63684 -17.58317 -17.16024 -17.04363 -16.87060 -16.82561 -16.52877 -16.36141 -15.85387 -15.78514 -15.16610 -14.75552 -14.64779 -14.50635 -14.42541 -14.03396 -13.97964 -13.38299 -13.22761 -13.15830 -12.87964 -12.86325 -12.76759 -12.62195 -12.50841 -12.46112 -12.11236 -11.77370 -11.70310 -11.65886 -11.13532 -11.05408 -10.66265 -10.27441 -10.16794 -9.92771 -9.20730 -8.65924 -8.33948 -6.12013 0.17054 0.44693 1.28377 1.43149 1.48101 1.58709 1.60270 1.97142 2.26759 2.30692 2.84083 2.97230 3.00289 3.33772 3.60676 3.81533 3.83598 3.97955 4.00914 4.07195 4.11086 4.24790 4.31704 4.32517 4.33710 4.34695 4.44862 4.48215 4.51713 4.54149 4.54606 4.69687 4.76080 4.85989 4.99386 5.01060 5.07382 5.28480 5.35877 5.42649 5.44050 5.58245 5.75381 6.18401 6.20583 6.42972 6.47526 7.07394 7.21266 8.75353 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.001566 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.293016 B =17879.490089 C =18965.429385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.065 3.935 4 C -0.118 4.118 5 C 0.061 3.939 6 O -0.333 6.333 7 C 0.117 3.883 8 C -0.198 4.198 9 C -0.078 4.078 10 C -0.141 4.141 11 C -0.068 4.068 12 C 0.164 3.836 13 N -0.709 5.709 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.148 4.148 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.414 0.586 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.266 -0.690 8.712 38.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.011 4.011 4 C -0.156 4.156 5 C -0.013 4.013 6 O -0.248 6.248 7 C 0.072 3.928 8 C -0.217 4.217 9 C -0.096 4.096 10 C -0.160 4.160 11 C -0.068 4.068 12 C 0.041 3.959 13 N -0.363 5.363 14 C 0.321 3.679 15 O -0.442 6.442 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.183 1.183 26 C -0.167 4.167 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.251 0.749 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -35.632 -1.105 10.289 37.104 hybrid contribution -0.735 0.097 -2.101 2.228 sum -36.367 -1.008 8.188 37.291 Atomic orbital electron populations 1.22935 0.79118 1.03846 1.01127 1.87831 1.21759 1.28841 1.95690 1.22385 0.92006 0.84718 1.01996 1.21332 0.94014 0.96088 1.04129 1.22774 0.77184 0.98152 1.03230 1.86031 1.20726 1.29206 1.88788 1.19032 0.91210 0.85538 0.97061 1.21589 1.01656 0.91407 1.07054 1.21276 0.93387 0.98851 0.96059 1.21246 0.95231 0.97306 1.02215 1.19471 0.93544 0.93225 1.00606 1.20174 0.89660 1.02961 0.83132 1.45801 1.05688 1.75526 1.09236 1.20067 0.82624 0.75079 0.90119 1.90696 1.56411 1.50187 1.46927 1.23373 1.01112 1.06838 0.96766 1.85559 0.98817 1.96997 1.10847 1.23217 0.95851 1.58895 0.91601 0.89932 1.26117 0.94634 0.93688 1.04585 1.70184 0.99623 1.47962 1.36999 0.84956 0.78080 0.78791 0.76159 1.19220 1.20282 1.18279 1.20399 0.91432 0.98858 1.06052 0.92902 0.88880 0.92823 0.91401 0.91492 0.91057 0.90937 0.90127 0.90029 0.82898 0.82702 0.84524 0.90469 0.91439 0.74885 0.87338 0.87064 0.91979 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.74 10.70 -148.98 -1.59 -7.34 16 3 C 0.07 0.56 5.94 71.98 0.43 0.99 16 4 C -0.12 -1.32 5.95 30.59 0.18 -1.14 16 5 C 0.06 0.61 4.74 71.98 0.34 0.96 16 6 O -0.33 -5.93 10.14 -92.47 -0.94 -6.87 16 7 C 0.12 2.07 6.69 22.51 0.15 2.22 16 8 C -0.20 -2.54 9.04 22.37 0.20 -2.34 16 9 C -0.08 -0.95 10.04 22.25 0.22 -0.73 16 10 C -0.14 -2.22 9.70 22.28 0.22 -2.00 16 11 C -0.07 -1.31 5.25 -19.88 -0.10 -1.41 16 12 C 0.16 3.92 5.80 85.64 0.50 4.41 16 13 N -0.71 -18.84 5.55 -466.80 -2.59 -21.43 16 14 C 0.54 20.14 7.85 87.66 0.69 20.83 16 15 O -0.56 -26.48 15.86 -3.04 -0.05 -26.52 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 22 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C -0.15 -2.98 9.64 22.37 0.22 -2.77 16 27 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.55 7.65 -2.39 -0.02 0.53 16 35 H 0.08 0.54 7.67 -2.39 -0.02 0.52 16 36 H 0.15 1.08 6.30 -2.91 -0.02 1.06 16 37 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 40 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 41 H 0.41 8.66 8.46 -92.71 -0.78 7.87 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 45 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -79.86 399.53 2.02 -77.84 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.20 Total: 18.02 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.84 Total: -13.96 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -2.30 Total: -77.50 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -2.58 Total: -40.73 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -79.86 2.02 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155520413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.178 kcal (2) G-P(sol) polarization free energy of solvation -79.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds