Wall clock time and date at job start Sat Apr 11 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 117.00103 * 2 1 4 4 O 1.20829 * 119.99486 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00117 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47168 * 179.97438 * 5 3 2 7 7 C 1.36696 * 119.99921 * 270.00209 * 6 5 3 8 8 H 1.08002 * 120.00226 * 42.11016 * 7 6 5 9 9 C 1.39133 * 119.99870 * 222.10940 * 7 6 5 10 10 N 1.31312 * 119.99938 * 16.38356 * 9 7 6 11 11 Si 1.86802 * 119.99919 * 196.37998 * 9 7 6 12 12 H 1.48501 * 109.46774 * 60.00518 * 11 9 7 13 13 H 1.48498 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47613 * 300.00157 * 11 9 7 15 15 C 1.34769 * 119.99775 * 90.00125 * 6 5 3 16 16 O 1.21770 * 120.00128 * 175.34695 * 15 6 5 17 17 C 1.46186 * 120.00246 * 355.34580 * 15 6 5 18 18 C 1.35057 * 120.00057 * 184.30355 * 17 15 6 19 19 C 1.47038 * 119.99937 * 174.64275 * 18 17 15 20 20 C 1.40912 * 119.78384 * 5.04895 * 19 18 17 21 21 C 1.35630 * 120.81752 * 179.75192 * 20 19 18 22 22 C 1.40777 * 120.06765 * 0.52045 * 21 20 19 23 23 C 1.40444 * 120.99860 * 179.76123 * 22 21 20 24 24 C 1.36175 * 119.73100 * 180.02562 * 23 22 21 25 25 C 1.39353 * 121.01699 * 359.95865 * 24 23 22 26 26 C 1.36094 * 120.94716 * 359.97438 * 25 24 23 27 27 C 1.40689 * 119.66276 * 0.02562 * 26 25 24 28 28 C 1.38851 * 119.78484 * 185.32798 * 19 18 17 29 29 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47021 * 300.00178 * 1 2 3 31 31 H 1.08997 * 109.47067 * 59.99937 * 1 2 3 32 32 H 1.09007 * 109.47165 * 60.00100 * 5 3 2 33 33 H 1.08997 * 109.47712 * 299.99820 * 5 3 2 34 34 H 0.97001 * 120.00138 * 184.88897 * 10 9 7 35 35 H 1.08001 * 119.99720 * 4.30048 * 17 15 6 36 36 H 1.08003 * 120.00047 * 354.63878 * 18 17 15 37 37 H 1.08002 * 119.59114 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.96305 * 180.26462 * 21 20 19 39 39 H 1.07995 * 120.13501 * 0.05112 * 23 22 21 40 40 H 1.07998 * 119.49031 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.52856 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.17522 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.28622 * 359.94846 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.1750 3.3350 -1.1851 8 1 3.4794 3.1953 -1.9994 9 6 5.2678 4.1818 -1.3413 10 7 6.2755 4.1148 -0.5020 11 14 5.3017 5.4139 -2.7450 12 1 4.1464 6.3385 -2.6198 13 1 6.5661 6.1907 -2.6913 14 1 5.2197 4.6916 -4.0398 15 6 4.1732 3.3263 1.1658 16 8 4.5996 4.4669 1.1672 17 6 3.8689 2.6582 2.4300 18 6 3.9778 3.3341 3.5943 19 6 3.5599 2.7009 4.8538 20 6 3.1471 1.3536 4.8566 21 6 2.7621 0.7472 6.0071 22 6 2.7608 1.4665 7.2173 23 6 2.3613 0.8595 8.4191 24 6 2.3695 1.5797 9.5747 25 6 2.7700 2.9144 9.5863 26 6 3.1652 3.5364 8.4421 27 6 3.1699 2.8245 7.2286 28 6 3.5690 3.4361 6.0317 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7807 0.8891 34 1 7.0043 4.7515 -0.5674 35 1 3.5571 1.6242 2.4330 36 1 4.3719 4.3397 3.6001 37 1 3.1405 0.7959 3.9318 38 1 2.4524 -0.2874 5.9941 39 1 2.0492 -0.1744 8.4267 40 1 2.0611 1.1091 10.4966 41 1 2.7676 3.4628 10.5166 42 1 3.4727 4.5714 8.4653 43 1 3.8824 4.4697 6.0262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185852141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:31 Heat of formation + Delta-G solvation = -33.776575 kcal Electronic energy + Delta-G solvation = -28172.946638 eV Core-core repulsion = 24149.588359 eV Total energy + Delta-G solvation = -4023.358279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.29101 -40.03123 -38.33176 -36.81813 -35.98571 -34.22567 -33.14757 -32.54608 -31.80675 -29.58064 -28.85458 -28.57236 -26.44247 -25.23851 -23.41408 -23.31529 -21.94613 -21.28976 -20.60103 -18.70174 -17.38248 -17.23733 -17.15150 -16.63045 -16.49316 -16.02861 -15.69922 -15.34028 -14.80641 -14.75500 -14.31724 -13.95687 -13.69415 -13.48033 -13.40368 -13.32443 -13.09482 -12.75642 -12.61248 -12.48317 -12.14112 -11.81176 -11.63266 -11.62665 -11.35187 -11.11153 -11.01215 -10.87823 -10.73486 -10.63133 -10.47693 -10.27747 -10.10232 -10.04020 -9.36211 -8.94402 -8.26828 -8.19420 -7.57188 -7.28074 -6.15404 -3.93662 0.39348 0.84281 1.87896 2.29615 2.72313 3.02952 3.23460 3.31959 3.36950 3.41696 4.15060 4.25635 4.53300 4.72701 4.75965 4.78174 4.84490 4.99440 5.04250 5.15772 5.21428 5.26641 5.30624 5.31708 5.33132 5.37437 5.39341 5.56950 5.68445 5.72477 5.74600 5.89037 5.92545 6.04943 6.12683 6.16867 6.26517 6.35590 6.47488 6.55369 6.74035 6.79945 6.92384 6.98134 7.06574 7.54660 8.13345 8.28869 8.90979 9.04231 9.50820 10.16455 10.89335 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003046 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.435908 B = 9190.327784 C =11005.746531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.430 3.570 4 O -0.487 6.487 5 C 0.116 3.884 6 N -0.427 5.427 7 C -0.339 4.339 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.813 5.813 11 Si 0.914 3.086 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.494 3.506 16 O -0.515 6.515 17 C -0.154 4.154 18 C -0.091 4.091 19 C -0.035 4.035 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.057 4.057 23 C -0.105 4.105 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.105 4.105 27 C -0.047 4.047 28 C -0.103 4.103 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 -10.071 14.410 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.287 6.287 3 C 0.270 3.730 4 O -0.371 6.371 5 C -0.011 4.011 6 N -0.148 5.148 7 C -0.466 4.466 8 H 0.098 0.902 9 C -0.146 4.146 10 N -0.446 5.446 11 Si 0.741 3.259 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.202 1.202 15 C 0.284 3.716 16 O -0.393 6.393 17 C -0.175 4.175 18 C -0.112 4.112 19 C -0.035 4.035 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.047 4.047 28 C -0.121 4.121 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.086 -9.115 14.385 18.445 hybrid contribution -0.311 0.510 -0.628 0.867 sum -7.397 -8.605 13.757 17.833 Atomic orbital electron populations 1.23131 0.77674 1.02829 1.02248 1.86535 1.22534 1.34671 1.84928 1.25416 0.93686 0.81135 0.72737 1.90677 1.66718 1.36265 1.43459 1.21152 0.85459 0.89277 1.05260 1.42875 1.60029 1.05769 1.06105 1.19010 1.07960 1.28186 0.91413 0.90186 1.25220 0.93385 0.98571 0.97413 1.69854 1.06580 1.32775 1.35435 0.86241 0.77633 0.81113 0.80937 1.19962 1.21048 1.20178 1.17769 0.84086 0.86766 0.82943 1.90670 1.44346 1.18109 1.86144 1.23500 1.00477 0.99052 0.94503 1.22088 0.98668 1.00546 0.89863 1.19134 0.97585 0.93348 0.93476 1.21106 0.98306 0.94367 0.98502 1.20885 1.00486 0.99594 0.91661 1.18140 1.00236 0.93341 0.94028 1.21010 0.99633 0.99668 0.91947 1.20808 1.00777 0.94626 0.98093 1.20801 0.99895 0.95097 0.98208 1.21087 0.99643 0.99715 0.91848 1.18034 0.99522 0.93256 0.93859 1.21492 1.00060 0.99760 0.90810 0.88733 0.92361 0.92298 0.86627 0.88201 0.92249 0.87392 0.84930 0.85581 0.85570 0.85806 0.86293 0.86219 0.85603 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.63 10.57 -39.27 -0.41 -6.04 16 3 C 0.43 8.04 8.02 36.00 0.29 8.33 16 4 O -0.49 -10.95 16.18 -18.75 -0.30 -11.26 16 5 C 0.12 2.19 5.60 -5.19 -0.03 2.16 16 6 N -0.43 -10.65 2.00 -117.77 -0.24 -10.88 16 7 C -0.34 -9.29 9.27 -15.05 -0.14 -9.43 16 8 H 0.08 2.15 7.89 -52.49 -0.41 1.74 16 9 C 0.07 1.84 4.46 -17.44 -0.08 1.76 16 10 N -0.81 -23.70 11.20 55.51 0.62 -23.08 16 11 Si 0.91 21.81 29.59 -169.99 -5.03 16.78 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 C 0.49 12.74 6.97 -13.07 -0.09 12.64 16 16 O -0.52 -15.35 13.43 5.13 0.07 -15.28 16 17 C -0.15 -3.13 8.59 -37.52 -0.32 -3.45 16 18 C -0.09 -1.71 9.43 -37.15 -0.35 -2.06 16 19 C -0.04 -0.56 5.86 -105.09 -0.62 -1.17 16 20 C -0.10 -1.46 9.31 -39.50 -0.37 -1.83 16 21 C -0.11 -1.32 9.73 -39.56 -0.38 -1.71 16 22 C -0.06 -0.73 5.75 -106.73 -0.61 -1.34 16 23 C -0.10 -1.08 9.75 -39.49 -0.39 -1.47 16 24 C -0.12 -1.18 9.95 -39.91 -0.40 -1.57 16 25 C -0.12 -1.18 9.95 -39.94 -0.40 -1.58 16 26 C -0.10 -1.17 9.77 -39.43 -0.39 -1.55 16 27 C -0.05 -0.62 5.74 -106.85 -0.61 -1.23 16 28 C -0.10 -1.47 9.53 -38.61 -0.37 -1.84 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.12 1.99 8.04 -51.93 -0.42 1.58 16 33 H 0.10 1.58 6.25 -51.93 -0.32 1.26 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.11 1.85 4.26 -52.49 -0.22 1.62 16 36 H 0.13 2.64 7.53 -52.48 -0.40 2.25 16 37 H 0.13 1.62 6.12 -52.49 -0.32 1.29 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -35.57 373.67 -8.88 -44.45 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.04 Total: 3.53 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.18 Total: -3.84 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.39 Total: -33.96 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.65 Total: -32.58 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.57 -8.88 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185852141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.669 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds