Wall clock time and date at job start Sat Apr 11 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 117.00103 * 2 1 4 4 O 1.20829 * 119.99486 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00117 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47168 * 179.97438 * 5 3 2 7 7 C 1.36696 * 119.99921 * 270.00209 * 6 5 3 8 8 H 1.08002 * 120.00226 * 42.11016 * 7 6 5 9 9 C 1.39133 * 119.99870 * 222.10940 * 7 6 5 10 10 N 1.31312 * 119.99938 * 16.38356 * 9 7 6 11 11 Si 1.86802 * 119.99919 * 196.37998 * 9 7 6 12 12 H 1.48501 * 109.46774 * 60.00518 * 11 9 7 13 13 H 1.48498 * 109.47113 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47613 * 300.00157 * 11 9 7 15 15 C 1.34769 * 119.99775 * 90.00125 * 6 5 3 16 16 O 1.21770 * 120.00128 * 175.34695 * 15 6 5 17 17 C 1.46186 * 120.00246 * 355.34580 * 15 6 5 18 18 C 1.35057 * 120.00057 * 184.30355 * 17 15 6 19 19 C 1.47038 * 119.99937 * 174.64275 * 18 17 15 20 20 C 1.40912 * 119.78384 * 5.04895 * 19 18 17 21 21 C 1.35630 * 120.81752 * 179.75192 * 20 19 18 22 22 C 1.40777 * 120.06765 * 0.52045 * 21 20 19 23 23 C 1.40444 * 120.99860 * 179.76123 * 22 21 20 24 24 C 1.36175 * 119.73100 * 180.02562 * 23 22 21 25 25 C 1.39353 * 121.01699 * 359.95865 * 24 23 22 26 26 C 1.36094 * 120.94716 * 359.97438 * 25 24 23 27 27 C 1.40689 * 119.66276 * 0.02562 * 26 25 24 28 28 C 1.38851 * 119.78484 * 185.32798 * 19 18 17 29 29 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47021 * 300.00178 * 1 2 3 31 31 H 1.08997 * 109.47067 * 59.99937 * 1 2 3 32 32 H 1.09007 * 109.47165 * 60.00100 * 5 3 2 33 33 H 1.08997 * 109.47712 * 299.99820 * 5 3 2 34 34 H 0.97001 * 120.00138 * 184.88897 * 10 9 7 35 35 H 1.08001 * 119.99720 * 4.30048 * 17 15 6 36 36 H 1.08003 * 120.00047 * 354.63878 * 18 17 15 37 37 H 1.08002 * 119.59114 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.96305 * 180.26462 * 21 20 19 39 39 H 1.07995 * 120.13501 * 0.05112 * 23 22 21 40 40 H 1.07998 * 119.49031 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.52856 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.17522 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.28622 * 359.94846 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.1750 3.3350 -1.1851 8 1 3.4794 3.1953 -1.9994 9 6 5.2678 4.1818 -1.3413 10 7 6.2755 4.1148 -0.5020 11 14 5.3017 5.4139 -2.7450 12 1 4.1464 6.3385 -2.6198 13 1 6.5661 6.1907 -2.6913 14 1 5.2197 4.6916 -4.0398 15 6 4.1732 3.3263 1.1658 16 8 4.5996 4.4669 1.1672 17 6 3.8689 2.6582 2.4300 18 6 3.9778 3.3341 3.5943 19 6 3.5599 2.7009 4.8538 20 6 3.1471 1.3536 4.8566 21 6 2.7621 0.7472 6.0071 22 6 2.7608 1.4665 7.2173 23 6 2.3613 0.8595 8.4191 24 6 2.3695 1.5797 9.5747 25 6 2.7700 2.9144 9.5863 26 6 3.1652 3.5364 8.4421 27 6 3.1699 2.8245 7.2286 28 6 3.5690 3.4361 6.0317 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7807 0.8891 34 1 7.0043 4.7515 -0.5674 35 1 3.5571 1.6242 2.4330 36 1 4.3719 4.3397 3.6001 37 1 3.1405 0.7959 3.9318 38 1 2.4524 -0.2874 5.9941 39 1 2.0492 -0.1744 8.4267 40 1 2.0611 1.1091 10.4966 41 1 2.7676 3.4628 10.5166 42 1 3.4727 4.5714 8.4653 43 1 3.8824 4.4697 6.0262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185852141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:29 Heat of formation + Delta-G solvation = -53.482834 kcal Electronic energy + Delta-G solvation = -28173.801165 eV Core-core repulsion = 24149.588359 eV Total energy + Delta-G solvation = -4024.212807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.55039 -41.19799 -40.08962 -37.86831 -37.43229 -36.06933 -34.52518 -33.87928 -33.33253 -30.55718 -30.06284 -29.96540 -27.82949 -26.90953 -24.81727 -24.24008 -22.86541 -22.72069 -22.02214 -20.29302 -19.00100 -18.66052 -18.19614 -18.11577 -17.62192 -17.32502 -17.13552 -16.88645 -16.34190 -15.93152 -15.63534 -15.27088 -15.12286 -14.70815 -14.61382 -14.45388 -14.22515 -14.16547 -14.03475 -13.65169 -13.42612 -13.35058 -12.94992 -12.90235 -12.81390 -12.78143 -12.57950 -12.37597 -12.13608 -11.93909 -11.73118 -11.67100 -11.63993 -11.10870 -10.93100 -10.53063 -10.18701 -9.30894 -9.26008 -8.66113 -8.21461 -6.04107 -0.65128 -0.12860 0.74427 1.21983 1.25700 1.37512 1.45559 1.49473 1.71886 2.18458 2.35471 2.90695 3.05085 3.19550 3.24885 3.64081 3.72049 3.86565 4.00307 4.04156 4.10660 4.13739 4.25260 4.29468 4.36443 4.38041 4.40374 4.41668 4.45961 4.56191 4.65008 4.73353 4.87909 5.00161 5.04355 5.15306 5.29694 5.34114 5.38214 5.38952 5.49235 5.59633 5.66267 5.71399 5.89835 6.10244 6.13851 6.82614 6.92218 7.09936 7.53399 8.23393 8.82925 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003046 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.435908 B = 9190.327784 C =11005.746531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.444 3.556 4 O -0.532 6.532 5 C 0.111 3.889 6 N -0.444 5.444 7 C -0.359 4.359 8 H 0.077 0.923 9 C 0.019 3.981 10 N -0.849 5.849 11 Si 0.970 3.030 12 H -0.287 1.287 13 H -0.283 1.283 14 H -0.252 1.252 15 C 0.484 3.516 16 O -0.574 6.574 17 C -0.183 4.183 18 C -0.060 4.060 19 C -0.067 4.067 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.069 4.069 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.070 4.070 28 C -0.100 4.100 29 H 0.139 0.861 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.261 0.739 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -12.929 17.259 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.286 3.714 4 O -0.420 6.420 5 C -0.015 4.015 6 N -0.164 5.164 7 C -0.487 4.487 8 H 0.094 0.906 9 C -0.189 4.189 10 N -0.484 5.484 11 Si 0.794 3.206 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.176 1.176 15 C 0.276 3.724 16 O -0.456 6.456 17 C -0.204 4.204 18 C -0.081 4.081 19 C -0.068 4.068 20 C -0.136 4.136 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.070 4.070 28 C -0.118 4.118 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.794 -12.052 17.219 22.783 hybrid contribution 0.032 1.300 -1.090 1.697 sum -8.762 -10.751 16.128 21.272 Atomic orbital electron populations 1.23513 0.75361 1.05667 1.01996 1.86505 1.24581 1.32239 1.84022 1.25085 0.93388 0.81385 0.71569 1.90669 1.67557 1.37957 1.45810 1.21366 0.86098 0.86345 1.07659 1.42991 1.60136 1.08006 1.05223 1.19173 1.07743 1.29482 0.92258 0.90572 1.26024 0.93191 1.00103 0.99549 1.69954 1.07218 1.33550 1.37636 0.85387 0.76861 0.78900 0.79415 1.21331 1.20840 1.17626 1.18606 0.82499 0.86489 0.84778 1.90610 1.47000 1.20665 1.87353 1.23231 1.04117 1.00732 0.92319 1.22188 0.95410 0.99187 0.91267 1.19016 1.00707 0.94816 0.92220 1.21188 0.99142 0.93545 0.99766 1.21232 0.98892 1.00910 0.90733 1.18515 0.99881 0.93181 0.95313 1.21360 0.99275 1.01139 0.91182 1.21287 0.98788 0.94386 0.99142 1.21228 0.98025 0.95566 0.98704 1.21322 1.00308 1.00535 0.91720 1.18271 1.00465 0.94226 0.94071 1.21678 0.99044 0.99962 0.91138 0.84266 0.92469 0.92853 0.84985 0.84954 0.92949 0.84102 0.87318 0.84780 0.82294 0.83010 0.83040 0.83406 0.84469 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.17 10.57 -51.47 -0.54 -10.71 16 3 C 0.44 16.40 8.02 71.23 0.57 16.97 16 4 O -0.53 -24.36 16.18 21.96 0.36 -24.00 16 5 C 0.11 4.19 5.60 85.63 0.48 4.67 16 6 N -0.44 -22.93 2.00 -644.69 -1.29 -24.22 16 7 C -0.36 -20.49 9.27 84.15 0.78 -19.71 16 8 H 0.08 4.26 7.89 -2.91 -0.02 4.23 16 9 C 0.02 1.11 4.46 84.99 0.38 1.49 16 10 N -0.85 -52.05 11.20 21.69 0.24 -51.81 16 11 Si 0.97 46.50 29.59 68.60 2.03 48.53 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.48 26.27 6.97 86.31 0.60 26.87 16 16 O -0.57 -36.58 13.43 -4.57 -0.06 -36.64 16 17 C -0.18 -7.72 8.59 23.60 0.20 -7.52 16 18 C -0.06 -2.36 9.43 23.85 0.22 -2.13 16 19 C -0.07 -2.14 5.86 -20.17 -0.12 -2.26 16 20 C -0.12 -3.16 9.31 22.32 0.21 -2.95 16 21 C -0.10 -2.17 9.73 22.29 0.22 -1.95 16 22 C -0.07 -1.55 5.75 -21.23 -0.12 -1.67 16 23 C -0.11 -1.84 9.75 22.33 0.22 -1.62 16 24 C -0.12 -1.67 9.95 22.06 0.22 -1.45 16 25 C -0.12 -1.82 9.95 22.04 0.22 -1.60 16 26 C -0.12 -2.43 9.77 22.37 0.22 -2.21 16 27 C -0.07 -1.76 5.74 -21.31 -0.12 -1.89 16 28 C -0.10 -2.87 9.53 22.90 0.22 -2.65 16 29 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.13 4.50 8.04 -2.38 -0.02 4.48 16 33 H 0.13 4.06 6.25 -2.39 -0.01 4.05 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.14 4.80 4.26 -2.91 -0.01 4.79 16 36 H 0.11 4.72 7.53 -2.91 -0.02 4.70 16 37 H 0.13 3.22 6.12 -2.91 -0.02 3.20 16 38 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -83.67 373.67 7.37 -76.30 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.04 Total: 20.38 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.59 Total: 2.18 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.05 Total: -76.03 kcal Atomic # 8 Polarization: -71.11 SS G_CDS: -0.25 Total: -71.36 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -83.67 7.37 -76.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185852141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.821 kcal (2) G-P(sol) polarization free energy of solvation -83.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds