Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00006 * 2 1 4 4 O 1.20822 * 120.00269 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99729 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47086 * 180.02562 * 5 3 2 7 7 C 1.36677 * 119.99991 * 270.00134 * 6 5 3 8 8 H 1.08000 * 120.00392 * 197.55895 * 7 6 5 9 9 C 1.39150 * 119.99847 * 17.56185 * 7 6 5 10 10 N 1.31309 * 120.00017 * 6.05333 * 9 7 6 11 11 Si 1.86793 * 119.99716 * 186.05254 * 9 7 6 12 12 H 1.48500 * 109.47540 * 60.00051 * 11 9 7 13 13 H 1.48507 * 109.46922 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47437 * 299.99742 * 11 9 7 15 15 C 1.34769 * 120.00039 * 89.99787 * 6 5 3 16 16 O 1.21792 * 120.00239 * 354.67592 * 15 6 5 17 17 C 1.41759 * 120.00031 * 174.66635 * 15 6 5 18 18 C 1.35314 * 120.00354 * 186.53225 * 17 15 6 19 19 C 1.46643 * 119.99836 * 10.77721 * 18 17 15 20 20 C 1.39279 * 120.71940 * 43.93006 * 19 18 17 21 21 C 1.38687 * 120.53317 * 179.97438 * 20 19 18 22 22 C 1.36214 * 121.87066 * 359.97438 * 21 20 19 23 23 C 1.40508 * 120.72619 * 359.97438 * 22 21 20 24 24 C 1.40558 * 121.32791 * 180.02562 * 23 22 21 25 25 C 1.36176 * 119.62863 * 179.97438 * 24 23 22 26 26 C 1.39259 * 120.99293 * 0.04702 * 25 24 23 27 27 C 1.36377 * 120.90089 * 359.97438 * 26 25 24 28 28 C 1.39896 * 119.62481 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47313 * 59.99537 * 1 2 3 30 30 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46852 * 300.00064 * 1 2 3 32 32 H 1.08999 * 109.47268 * 60.00385 * 5 3 2 33 33 H 1.08999 * 109.47233 * 299.99802 * 5 3 2 34 34 H 0.97002 * 119.99974 * 185.01198 * 10 9 7 35 35 H 1.08008 * 120.00360 * 6.53701 * 17 15 6 36 36 H 1.08005 * 120.00090 * 190.77966 * 18 17 15 37 37 H 1.07997 * 119.73916 * 0.25650 * 20 19 18 38 38 H 1.07994 * 119.06676 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.63798 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.18486 * 359.97436 * 24 23 22 41 41 H 1.07994 * 119.50736 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.55016 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.18474 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1760 3.3353 -1.1823 8 1 4.7421 4.2548 -1.2038 9 6 3.6442 2.8181 -2.3596 10 7 2.8575 1.7676 -2.3188 11 14 4.0494 3.6184 -3.9981 12 1 5.5173 3.5778 -4.2193 13 1 3.3641 2.8829 -5.0911 14 1 3.5895 5.0304 -3.9866 15 6 4.1724 3.3256 1.1684 16 8 3.9065 2.7730 2.2207 17 6 4.6825 4.6482 1.1716 18 6 4.9984 5.2488 2.3423 19 6 5.0405 4.4645 3.5807 20 6 5.6461 3.2106 3.6085 21 6 5.6841 2.4724 4.7820 22 6 5.1392 2.9358 5.9412 23 6 4.5130 4.1928 5.9879 24 6 3.9470 4.6836 7.1772 25 6 3.3489 5.9069 7.1834 26 6 3.2879 6.6812 6.0275 27 6 3.8264 6.2352 4.8566 28 6 4.4495 4.9834 4.8145 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 2.5454 1.3630 -3.1433 35 1 4.8189 5.1767 0.2396 36 1 5.2196 6.3057 2.3646 37 1 6.0936 2.8117 2.7102 38 1 6.1593 1.5026 4.7766 39 1 5.1890 2.3305 6.8342 40 1 3.9863 4.0937 8.0811 41 1 2.9151 6.2823 8.0984 42 1 2.8076 7.6479 6.0587 43 1 3.7729 6.8454 3.9671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255718322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -36.616198 kcal Electronic energy + Delta-G solvation = -29297.471106 eV Core-core repulsion = 25273.989691 eV Total energy + Delta-G solvation = -4023.481415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 4.97 seconds Orbital eigenvalues (eV) -41.51284 -40.97270 -40.17251 -37.71277 -36.96925 -36.44196 -34.90323 -33.51336 -32.38750 -31.07207 -30.51258 -29.28909 -27.93063 -26.76289 -24.87819 -23.89260 -23.55958 -22.31916 -21.52549 -20.59052 -18.68299 -18.60340 -18.43489 -18.04934 -17.46338 -17.23237 -16.95873 -16.85825 -16.22351 -15.99170 -15.56312 -15.14954 -14.92772 -14.80378 -14.34410 -14.32426 -14.24888 -14.03478 -13.96055 -13.72550 -13.39431 -13.19317 -13.05200 -12.89361 -12.69499 -12.54004 -12.42471 -12.16840 -12.07510 -11.77848 -11.58143 -11.57613 -11.45333 -11.03724 -10.93521 -10.32271 -10.01746 -9.88749 -9.29123 -8.39988 -8.25201 -5.95728 -0.53961 0.27331 0.44727 1.34910 1.46416 1.50703 1.56855 1.79827 2.00848 2.29837 2.32053 2.62206 3.00303 3.24071 3.30255 3.80606 3.91803 4.04824 4.14970 4.20731 4.25390 4.32694 4.35089 4.37754 4.38910 4.50453 4.56527 4.64411 4.66312 4.70129 4.74005 4.85181 4.97218 5.09946 5.23663 5.31891 5.40197 5.44303 5.47253 5.51266 5.64113 5.65303 5.74127 5.76371 5.90324 6.06171 6.24225 6.32320 7.03782 7.27400 7.49003 7.92631 8.64830 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003643 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.860601 B = 7684.267508 C = 8592.606636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.378 6.378 3 C 0.496 3.504 4 O -0.549 6.549 5 C 0.158 3.842 6 N -0.430 5.430 7 C -0.339 4.339 8 H 0.121 0.879 9 C -0.008 4.008 10 N -0.904 5.904 11 Si 1.003 2.997 12 H -0.257 1.257 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.474 3.526 16 O -0.613 6.613 17 C -0.191 4.191 18 C -0.046 4.046 19 C -0.073 4.073 20 C -0.039 4.039 21 C -0.133 4.133 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.054 4.054 29 H 0.043 0.957 30 H 0.134 0.866 31 H 0.046 0.954 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.273 0.727 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 3.409 10.986 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.340 3.660 4 O -0.437 6.437 5 C 0.033 3.967 6 N -0.146 5.146 7 C -0.466 4.466 8 H 0.138 0.862 9 C -0.209 4.209 10 N -0.544 5.544 11 Si 0.826 3.174 12 H -0.181 1.181 13 H -0.212 1.212 14 H -0.197 1.197 15 C 0.268 3.732 16 O -0.502 6.502 17 C -0.211 4.211 18 C -0.066 4.066 19 C -0.073 4.073 20 C -0.058 4.058 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.054 4.054 29 H 0.062 0.938 30 H 0.152 0.848 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.060 3.305 11.286 12.152 hybrid contribution -0.532 -0.001 -1.573 1.660 sum 2.528 3.305 9.714 10.567 Atomic orbital electron populations 1.23247 0.76511 1.04719 1.00920 1.86420 1.23853 1.34063 1.85154 1.23956 0.92535 0.80563 0.68972 1.90468 1.67446 1.37807 1.48011 1.20600 0.87035 0.85698 1.03412 1.43703 1.56001 1.08653 1.06274 1.20203 1.32610 1.09678 0.84118 0.86198 1.26214 0.93963 0.97152 1.03532 1.69623 1.31913 1.23349 1.29526 0.84820 0.78948 0.77865 0.75719 1.18083 1.21240 1.19689 1.17632 0.84158 0.88145 0.83244 1.90750 1.58922 1.69654 1.30900 1.22242 1.03355 0.95913 0.99606 1.22360 0.94865 0.99360 0.90058 1.20013 0.99706 0.95416 0.92174 1.21071 0.96138 0.92027 0.96524 1.20795 1.01242 1.00386 0.92709 1.21195 0.97588 0.95086 0.98882 1.18313 1.00833 0.95449 0.93961 1.21333 0.97598 0.96887 0.96809 1.21159 0.99844 0.94641 0.99233 1.21210 0.99100 1.00981 0.92380 1.21091 0.99093 0.95021 0.99479 1.19245 0.98682 0.95181 0.92329 0.93778 0.84803 0.93472 0.85556 0.89987 0.91600 0.84125 0.82302 0.88349 0.84959 0.83376 0.83263 0.83121 0.83595 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.56 113.37 1.20 2.61 16 2 O -0.38 -16.95 10.57 -51.43 -0.54 -17.50 16 3 C 0.50 25.76 5.84 71.24 0.42 26.17 16 4 O -0.55 -32.21 15.82 21.97 0.35 -31.86 16 5 C 0.16 7.86 5.21 85.63 0.45 8.30 16 6 N -0.43 -21.86 2.10 -649.54 -1.37 -23.23 16 7 C -0.34 -16.79 9.21 84.16 0.78 -16.01 16 8 H 0.12 5.40 5.80 -2.91 -0.02 5.39 16 9 C -0.01 -0.41 5.25 84.99 0.45 0.04 16 10 N -0.90 -46.62 8.19 21.70 0.18 -46.44 16 11 Si 1.00 38.83 29.56 68.60 2.03 40.85 16 12 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 13 H -0.29 -11.20 7.11 99.48 0.71 -10.50 16 14 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 15 C 0.47 23.24 6.50 85.11 0.55 23.80 16 16 O -0.61 -31.96 11.59 -4.64 -0.05 -32.01 16 17 C -0.19 -7.82 9.07 22.47 0.20 -7.61 16 18 C -0.05 -1.60 8.85 23.79 0.21 -1.39 16 19 C -0.07 -2.75 4.67 -18.73 -0.09 -2.84 16 20 C -0.04 -1.49 6.61 22.63 0.15 -1.34 16 21 C -0.13 -4.40 9.87 21.91 0.22 -4.18 16 22 C -0.11 -3.26 9.71 22.35 0.22 -3.04 16 23 C -0.09 -2.69 5.74 -21.32 -0.12 -2.81 16 24 C -0.11 -2.66 9.78 22.36 0.22 -2.44 16 25 C -0.13 -2.87 9.95 22.04 0.22 -2.65 16 26 C -0.12 -2.84 9.96 22.08 0.22 -2.62 16 27 C -0.13 -3.82 9.46 22.24 0.21 -3.61 16 28 C -0.05 -1.89 5.90 -19.94 -0.12 -2.00 16 29 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 32 H 0.13 6.24 6.34 -2.39 -0.02 6.23 16 33 H 0.08 3.88 7.50 -2.39 -0.02 3.86 16 34 H 0.27 13.56 8.31 -92.71 -0.77 12.78 16 35 H 0.14 5.30 6.03 -2.91 -0.02 5.28 16 36 H 0.16 4.25 7.72 -2.91 -0.02 4.23 16 37 H 0.10 3.96 7.04 -2.91 -0.02 3.94 16 38 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.13 3.48 7.08 -2.91 -0.02 3.46 16 Total: -1.00 -71.42 361.82 7.01 -64.42 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 1.04 Total: 37.39 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.37 Total: 8.38 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.19 Total: -69.67 kcal Atomic # 8 Polarization: -81.12 SS G_CDS: -0.25 Total: -81.37 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -71.42 7.01 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255718322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.97 seconds