Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42099 * 108.58517 * 2 1 4 4 O 1.42108 * 108.57883 * 228.97123 * 2 1 3 5 5 C 1.81401 * 101.91990 * 114.48710 * 2 1 3 6 6 H 1.08998 * 109.50369 * 64.92131 * 5 2 1 7 7 C 1.53120 * 109.53717 * 304.82211 * 5 2 1 8 8 C 1.53115 * 109.16462 * 182.38766 * 7 5 2 9 9 C 1.53039 * 109.27884 * 57.65080 * 8 7 5 10 10 N 1.46851 * 109.52537 * 300.82443 * 9 8 7 11 11 C 1.46894 * 111.00003 * 185.84191 * 10 9 8 12 12 C 1.50695 * 109.47563 * 45.78921 * 11 10 9 13 13 C 1.38309 * 119.93052 * 269.72940 * 12 11 10 14 14 C 1.38103 * 120.07033 * 179.72045 * 13 12 11 15 15 C 1.38876 * 119.92534 * 0.55077 * 14 13 12 16 16 O 1.35754 * 120.06597 * 179.74522 * 15 14 13 17 17 C 1.34834 * 117.00240 * 174.43894 * 16 15 14 18 18 H 1.08000 * 119.99834 * 5.05697 * 17 16 15 19 19 C 1.38647 * 120.00036 * 185.05818 * 17 16 15 20 20 N 1.31556 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99816 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47270 * 60.00154 * 21 19 17 23 23 H 1.48505 * 109.47303 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47032 * 299.99852 * 21 19 17 25 25 C 1.38879 * 119.86811 * 359.72293 * 15 14 13 26 26 C 1.38100 * 119.92794 * 0.02562 * 25 15 14 27 27 C 1.46847 * 111.19852 * 61.74106 * 10 9 8 28 28 H 1.08999 * 109.47598 * 305.51710 * 1 2 3 29 29 H 1.09001 * 109.47348 * 65.51418 * 1 2 3 30 30 H 1.08996 * 109.47450 * 185.51461 * 1 2 3 31 31 H 1.09001 * 109.51856 * 302.29078 * 7 5 2 32 32 H 1.08999 * 109.52177 * 62.41131 * 7 5 2 33 33 H 1.09001 * 109.50645 * 177.59406 * 8 7 5 34 34 H 1.09004 * 109.50050 * 297.67491 * 8 7 5 35 35 H 1.09000 * 109.46304 * 180.80818 * 9 8 7 36 36 H 1.08997 * 109.46102 * 60.84019 * 9 8 7 37 37 H 1.08999 * 109.47153 * 285.78832 * 11 10 9 38 38 H 1.09004 * 109.47166 * 165.79059 * 11 10 9 39 39 H 1.07996 * 119.96320 * 359.97438 * 13 12 11 40 40 H 1.07998 * 120.03412 * 180.26813 * 14 13 12 41 41 H 0.97001 * 119.99771 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.03604 * 180.02562 * 25 15 14 43 43 H 1.07997 * 119.96284 * 180.02562 * 26 25 15 44 44 H 1.09000 * 109.45787 * 58.27369 * 27 10 9 45 45 H 1.08993 * 109.45970 * 178.25571 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1886 -0.7357 1.6152 6 1 1.8376 -1.7674 1.6354 7 6 1.4881 0.0642 2.7171 8 6 1.8578 -0.5274 4.0801 9 6 3.3790 -0.5032 4.2456 10 7 4.0024 -1.2826 3.1682 11 6 5.4525 -1.3971 3.3726 12 6 5.7306 -1.7572 4.8092 13 6 5.9157 -0.7582 5.7476 14 6 6.1650 -1.0849 7.0661 15 6 6.2410 -2.4182 7.4471 16 8 6.4910 -2.7426 8.7414 17 6 6.4375 -4.0501 9.0661 18 1 6.2849 -4.7919 8.2961 19 6 6.5784 -4.4424 10.3884 20 7 6.7647 -3.5388 11.3263 21 14 6.5051 -6.2539 10.8382 22 1 7.5872 -6.9839 10.1303 23 1 6.6822 -6.4075 12.3046 24 1 5.1880 -6.8105 10.4373 25 6 6.0602 -3.4191 6.5014 26 6 5.8061 -3.0859 5.1855 27 6 3.7003 -0.7055 1.8522 28 1 -0.3634 0.5970 0.8364 29 1 -0.3634 0.4259 -0.9352 30 1 -0.3634 -1.0228 0.0988 31 1 1.8097 1.1047 2.6723 32 1 0.4086 0.0102 2.5762 33 1 1.3963 0.0641 4.8709 34 1 1.5011 -1.5557 4.1393 35 1 3.6465 -0.9370 5.2091 36 1 3.7329 0.5267 4.2003 37 1 5.9288 -0.4452 3.1379 38 1 5.8512 -2.1736 2.7197 39 1 5.8613 0.2784 5.4498 40 1 6.3052 -0.3044 7.7992 41 1 6.8629 -3.8132 12.2515 42 1 6.1183 -4.4569 6.7947 43 1 5.6650 -3.8638 4.4497 44 1 4.0527 0.3254 1.8182 45 1 4.2008 -1.2862 1.0775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274143448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -92.100440 kcal Electronic energy + Delta-G solvation = -27120.419079 eV Core-core repulsion = 23229.975638 eV Total energy + Delta-G solvation = -3890.443441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.03209 -40.00399 -38.23932 -37.97115 -37.04383 -35.00627 -34.18621 -32.16785 -31.79957 -31.12632 -30.14785 -27.72566 -26.59215 -24.57342 -23.97031 -23.57866 -21.96747 -20.87330 -19.85513 -19.70315 -18.82967 -17.97677 -17.19849 -16.89362 -16.57941 -16.48823 -16.40744 -16.17013 -15.61712 -15.47277 -15.31844 -15.07989 -15.05957 -14.47497 -14.30142 -14.08988 -13.91503 -13.85193 -13.65475 -13.54677 -13.14333 -13.12711 -13.03513 -12.94391 -12.78555 -12.42127 -12.34976 -12.18122 -12.12648 -12.08174 -11.87097 -11.73735 -11.46952 -11.17904 -10.95322 -10.78113 -9.77205 -9.35475 -8.87322 -8.47202 -6.15317 -0.93617 0.58306 0.65386 1.35194 1.45519 1.51255 1.84379 2.17832 2.59269 2.79711 3.05067 3.07510 3.28827 3.46717 3.50993 3.63142 3.90128 4.01815 4.05494 4.13578 4.17247 4.18629 4.27383 4.33529 4.41448 4.46040 4.57710 4.62465 4.67653 4.73728 4.80927 4.84451 4.86391 5.00320 5.06982 5.09497 5.15364 5.19995 5.28512 5.38781 5.54665 5.71158 5.79390 6.02503 6.05446 6.10198 6.21644 6.97531 7.77950 8.75678 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002139 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.350250 B =13084.515717 C =13190.565444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.420 3.580 3 O -0.981 6.981 4 O -0.985 6.985 5 C -0.558 4.558 6 H 0.164 0.836 7 C -0.114 4.114 8 C -0.109 4.109 9 C 0.042 3.958 10 N -0.528 5.528 11 C 0.109 3.891 12 C -0.158 4.158 13 C -0.057 4.057 14 C -0.203 4.203 15 C 0.117 3.883 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.242 4.242 26 C -0.048 4.048 27 C 0.061 3.939 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.047 0.953 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 5.825 -22.002 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.607 3.393 3 O -0.978 6.978 4 O -0.982 6.982 5 C -0.667 4.667 6 H 0.182 0.818 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.086 4.086 10 N -0.253 5.253 11 C -0.018 4.018 12 C -0.159 4.159 13 C -0.075 4.075 14 C -0.222 4.222 15 C 0.066 3.934 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.262 4.262 26 C -0.066 4.066 27 C -0.068 4.068 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.174 0.826 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.065 0.935 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.831 5.818 -22.277 27.387 hybrid contribution 0.353 -0.221 1.372 1.434 sum -14.477 5.597 -20.904 26.037 Atomic orbital electron populations 1.30098 1.20808 1.14266 1.13679 1.07654 0.80603 0.74306 0.76715 1.93537 1.81190 1.36212 1.86879 1.93549 1.81342 1.67677 1.55620 1.30244 1.03550 1.14190 1.18765 0.81823 1.21658 1.01868 0.98723 0.92924 1.21525 0.93911 1.02303 0.97056 1.22293 0.95865 0.95394 0.95045 1.62043 1.10372 1.51421 1.01435 1.20920 0.87533 1.01085 0.92269 1.19472 1.07914 0.92764 0.95701 1.20817 0.96549 0.99456 0.90697 1.20386 1.11210 0.92868 0.97744 1.19926 0.93648 0.94857 0.84973 1.83942 1.78757 1.28433 1.22692 1.21769 1.52128 0.80597 0.94442 0.88136 1.26579 0.95874 1.05577 0.93985 1.70177 1.47774 1.36321 1.01585 0.84663 0.79905 0.73923 0.77832 1.18213 1.19650 1.18118 1.21242 1.11401 0.99066 0.94448 1.20879 0.95218 0.96499 0.94043 1.21855 0.92700 0.99151 0.93122 0.82570 0.84105 0.82558 0.90212 0.86454 0.89953 0.90890 0.91400 0.94764 0.93375 0.88968 0.84371 0.87014 0.91840 0.86429 0.84509 0.93463 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.50 10.03 113.37 1.14 -0.36 16 2 S 2.42 30.25 4.90 -56.49 -0.28 29.97 16 3 O -0.98 -20.04 18.06 -127.37 -2.30 -22.34 16 4 O -0.98 -20.54 18.10 -127.37 -2.31 -22.84 16 5 C -0.56 -6.50 2.78 30.65 0.09 -6.41 16 6 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.11 4.93 30.67 0.15 -0.96 16 8 C -0.11 -1.69 6.09 30.65 0.19 -1.50 16 9 C 0.04 0.91 4.58 86.33 0.40 1.31 16 10 N -0.53 -11.39 4.80 -900.94 -4.32 -15.71 16 11 C 0.11 2.54 5.43 85.56 0.46 3.01 16 12 C -0.16 -4.78 4.12 -19.83 -0.08 -4.86 16 13 C -0.06 -1.85 7.80 22.25 0.17 -1.68 16 14 C -0.20 -8.49 9.99 22.39 0.22 -8.27 16 15 C 0.12 5.74 6.65 22.58 0.15 5.89 16 16 O -0.23 -13.90 9.76 -22.82 -0.22 -14.12 16 17 C -0.41 -23.98 9.49 67.92 0.64 -23.34 16 18 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.37 13.67 21.61 0.30 -56.08 16 21 Si 1.02 42.62 29.55 68.60 2.03 44.64 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 C -0.24 -10.43 9.17 22.39 0.21 -10.23 16 26 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 27 C 0.06 1.08 4.71 86.33 0.41 1.48 16 28 H 0.16 -0.31 6.84 -2.39 -0.02 -0.33 16 29 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 0.21 6.55 -2.39 -0.02 0.20 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.88 5.65 -2.39 -0.01 1.86 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 1.04 8.02 -2.39 -0.02 1.02 16 38 H 0.09 1.95 8.08 -2.38 -0.02 1.93 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 Total: -1.00 -83.20 372.83 -1.29 -84.50 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.99 Total: 20.12 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 4.82 Total: -48.15 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -4.03 Total: -71.79 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -4.83 Total: -59.30 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 30.25 SS G_CDS: -0.28 Total: 29.97 kcal Total: -83.20 -1.29 -84.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274143448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.604 kcal (2) G-P(sol) polarization free energy of solvation -83.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds