Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42106 * 108.57600 * 2 1 4 4 O 1.42094 * 108.57983 * 228.97078 * 2 1 3 5 5 C 1.81405 * 101.91854 * 114.48204 * 2 1 3 6 6 C 1.53007 * 109.46817 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46521 * 180.02562 * 6 5 2 8 8 C 1.53010 * 109.46523 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46802 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46802 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99692 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99839 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.40016 * 119.89772 * 0.24248 * 13 11 10 15 15 C 1.36315 * 120.10695 * 180.25948 * 14 13 11 16 16 C 1.40885 * 119.89334 * 359.47978 * 15 14 13 17 17 C 1.41111 * 120.10536 * 180.30167 * 16 15 14 18 18 H 1.07996 * 120.00198 * 154.52656 * 17 16 15 19 19 C 1.40227 * 119.99546 * 334.52369 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.06447 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.06669 * 19 17 16 22 22 H 1.48503 * 109.47357 * 59.99742 * 21 19 17 23 23 H 1.48498 * 109.47368 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47336 * 300.00015 * 21 19 17 25 25 C 1.40888 * 119.79168 * 0.27218 * 16 15 14 26 26 C 1.36313 * 119.89186 * 0.02562 * 25 16 15 27 27 H 1.08991 * 109.47462 * 305.51800 * 1 2 3 28 28 H 1.09007 * 109.46991 * 65.51813 * 1 2 3 29 29 H 1.08999 * 109.46871 * 185.51505 * 1 2 3 30 30 H 1.09000 * 109.47076 * 60.00280 * 5 2 1 31 31 H 1.09003 * 109.47177 * 299.99847 * 5 2 1 32 32 H 1.08996 * 109.46940 * 59.99853 * 6 5 2 33 33 H 1.08994 * 109.46822 * 299.99961 * 6 5 2 34 34 H 1.09000 * 109.47256 * 59.99971 * 7 6 5 35 35 H 1.08994 * 109.47508 * 299.99501 * 7 6 5 36 36 H 1.09000 * 109.47066 * 60.00237 * 8 7 6 37 37 H 1.08994 * 109.47133 * 300.00112 * 8 7 6 38 38 H 1.09000 * 109.47033 * 60.00319 * 9 8 7 39 39 H 1.09002 * 109.46906 * 300.00307 * 9 8 7 40 40 H 0.97001 * 120.00109 * 0.02562 * 10 9 8 41 41 H 1.08000 * 119.94850 * 0.03457 * 14 13 11 42 42 H 1.08004 * 120.05046 * 179.74690 * 15 14 13 43 43 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.05374 * 180.02562 * 25 16 15 45 45 H 1.07999 * 119.94443 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6154 6 6 3.7054 -0.8183 1.7986 7 6 4.0213 -1.4392 3.1607 8 6 5.5382 -1.5225 3.3437 9 6 5.8542 -2.1429 4.7062 10 7 7.3065 -2.2221 4.8816 11 6 7.8211 -2.7387 6.0151 12 8 7.0800 -3.1386 6.8922 13 6 9.2846 -2.8180 6.1921 14 6 10.1360 -2.3513 5.1833 15 6 11.4880 -2.4273 5.3401 16 6 12.0283 -2.9665 6.5242 17 6 13.4272 -3.0415 6.6938 18 1 13.8509 -3.0518 7.6872 19 6 14.2671 -3.1027 5.5726 20 7 13.7755 -3.4212 4.4048 21 14 16.0888 -2.7290 5.7487 22 1 16.6998 -3.6846 6.7073 23 1 16.7517 -2.8629 4.4267 24 1 16.2634 -1.3430 6.2525 25 6 11.1676 -3.4301 7.5387 26 6 9.8170 -3.3555 7.3703 27 1 -0.3634 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0988 30 1 1.7610 -1.7368 1.6666 31 1 1.7609 -0.1169 2.4043 32 1 4.1327 0.1832 1.7474 33 1 4.1335 -1.4367 1.0097 34 1 3.5940 -2.4407 3.2114 35 1 3.5933 -0.8212 3.9499 36 1 5.9658 -0.5212 3.2929 37 1 5.9659 -2.1408 2.5545 38 1 5.4265 -3.1442 4.7574 39 1 5.4264 -1.5243 5.4951 40 1 7.8977 -1.9028 4.1820 41 1 9.7209 -1.9337 4.2779 42 1 12.1439 -2.0708 4.5596 43 1 14.3564 -3.4632 3.6291 44 1 11.5773 -3.8439 8.4484 45 1 9.1564 -3.7110 8.1473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275003409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -114.513556 kcal Electronic energy + Delta-G solvation = -25217.016306 eV Core-core repulsion = 21325.600960 eV Total energy + Delta-G solvation = -3891.415346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -39.12148 -37.41469 -37.27698 -36.63148 -36.37827 -34.28626 -33.86344 -31.46903 -30.22296 -29.91519 -29.44152 -26.88810 -25.47792 -22.77583 -21.62485 -21.55022 -20.85255 -19.53533 -19.27209 -17.52739 -17.07646 -16.84800 -16.81775 -16.40002 -16.00787 -15.62687 -15.24949 -14.89158 -14.15405 -13.98258 -13.81237 -13.79889 -13.69712 -13.57429 -13.20876 -12.92250 -12.65052 -12.62183 -12.50264 -12.41597 -12.10848 -11.91399 -11.87569 -11.56761 -11.53251 -11.40364 -11.33828 -11.26193 -10.99463 -10.86486 -10.72925 -10.62725 -10.05969 -9.55659 -9.36014 -8.97316 -8.59765 -7.72422 -7.53811 -7.02846 -4.60716 -0.51477 2.23306 2.25350 2.92797 2.94590 2.98488 3.03214 3.13721 3.50562 3.73900 3.75033 3.87599 4.11734 4.14065 4.24625 4.45734 4.54531 4.57021 4.75946 4.93705 5.07213 5.09263 5.16600 5.33674 5.44223 5.55919 5.57027 5.64545 5.76886 5.96512 6.04424 6.07102 6.21495 6.31516 6.76597 6.82762 6.93632 7.05843 7.13233 7.43368 7.64925 7.78728 7.85551 8.07048 8.24128 8.39626 8.62886 8.74987 9.07647 9.89299 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.001575 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.852248 B =17773.077353 C =18985.091087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.418 3.582 3 O -0.939 6.939 4 O -0.939 6.939 5 C -0.609 4.609 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.124 3.876 10 N -0.744 5.744 11 C 0.571 3.429 12 O -0.577 6.577 13 C -0.285 4.285 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.773 5.773 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.238 4.238 26 C -0.022 4.022 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 6.098 -9.361 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.601 3.399 3 O -0.936 6.936 4 O -0.936 6.936 5 C -0.738 4.738 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.174 4.174 9 C 0.000 4.000 10 N -0.397 5.397 11 C 0.366 3.634 12 O -0.460 6.460 13 C -0.289 4.289 14 C -0.082 4.082 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.147 4.147 20 N -0.396 5.396 21 Si 0.738 3.262 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.258 4.258 26 C -0.042 4.042 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.794 6.067 -9.678 23.725 hybrid contribution 0.358 -0.068 0.187 0.409 sum -20.436 5.999 -9.491 23.318 Atomic orbital electron populations 1.30290 1.27110 1.11539 1.11793 1.07908 0.78207 0.75885 0.77914 1.93614 1.78918 1.34531 1.86587 1.93613 1.78906 1.66983 1.54128 1.30340 1.06636 1.14011 1.22817 1.21365 0.90154 1.03420 1.00256 1.21447 0.95821 1.01570 0.95822 1.21848 0.96088 1.02033 0.97456 1.21158 0.82160 1.00609 0.96105 1.45915 1.06619 1.66353 1.20799 1.18591 0.89038 0.75423 0.80362 1.90627 1.62003 1.50751 1.42585 1.18912 0.89883 1.20374 0.99752 1.20478 0.94225 0.97875 0.95654 1.20973 0.93283 1.05113 1.00244 1.17791 0.93101 0.85777 0.90804 1.19816 0.91276 1.41979 0.94060 0.89753 1.26094 1.02174 0.91906 0.94523 1.69731 1.38816 1.30287 1.00813 0.86252 0.80738 0.80482 0.78722 1.18674 1.20061 1.18486 1.20725 0.92690 1.10784 1.01595 1.20362 0.94689 0.94374 0.94741 0.85357 0.85294 0.85353 0.84863 0.84872 0.89935 0.89929 0.91140 0.91149 0.90975 0.90939 0.92157 0.92171 0.76729 0.89309 0.86197 0.90175 0.88376 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.25 10.62 101.05 1.07 -0.18 16 2 S 2.42 12.85 5.36 -107.50 -0.58 12.27 16 3 O -0.94 -8.91 18.10 -57.83 -1.05 -9.96 16 4 O -0.94 -8.94 18.10 -57.83 -1.05 -9.99 16 5 C -0.61 -2.21 5.81 37.16 0.22 -2.00 16 6 C -0.11 -0.73 5.22 -26.73 -0.14 -0.87 16 7 C -0.11 -0.77 5.22 -26.73 -0.14 -0.91 16 8 C -0.14 -1.28 5.33 -26.72 -0.14 -1.42 16 9 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 10 N -0.74 -12.28 5.50 -61.31 -0.34 -12.62 16 11 C 0.57 12.20 7.76 -12.43 -0.10 12.10 16 12 O -0.58 -13.83 16.32 5.29 0.09 -13.75 16 13 C -0.28 -6.53 5.89 -104.73 -0.62 -7.15 16 14 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.33 8.63 -39.27 -0.34 -4.66 16 16 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 17 C -0.44 -11.03 9.05 -37.75 -0.34 -11.37 16 18 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 20 N -0.77 -18.52 10.95 55.56 0.61 -17.92 16 21 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 23 H -0.28 -5.07 7.11 56.52 0.40 -4.66 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 25 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 H 0.13 0.03 8.14 -51.93 -0.42 -0.40 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 30 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 5.83 6.47 -40.82 -0.26 5.57 16 41 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 42 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 43 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -35.39 390.64 -10.61 -46.00 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.79 Total: 7.20 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.37 Total: -19.37 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.27 Total: -30.53 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -2.01 Total: -33.70 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 12.85 SS G_CDS: -0.58 Total: 12.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.39 -10.61 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275003409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.509 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds