Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42106 * 108.57600 * 2 1 4 4 O 1.42094 * 108.57983 * 228.97078 * 2 1 3 5 5 C 1.81405 * 101.91854 * 114.48204 * 2 1 3 6 6 C 1.53007 * 109.46817 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.46521 * 180.02562 * 6 5 2 8 8 C 1.53010 * 109.46523 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46802 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46802 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99692 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99839 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.40016 * 119.89772 * 0.24248 * 13 11 10 15 15 C 1.36315 * 120.10695 * 180.25948 * 14 13 11 16 16 C 1.40885 * 119.89334 * 359.47978 * 15 14 13 17 17 C 1.41111 * 120.10536 * 180.30167 * 16 15 14 18 18 H 1.07996 * 120.00198 * 154.52656 * 17 16 15 19 19 C 1.40227 * 119.99546 * 334.52369 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.06447 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.06669 * 19 17 16 22 22 H 1.48503 * 109.47357 * 59.99742 * 21 19 17 23 23 H 1.48498 * 109.47368 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47336 * 300.00015 * 21 19 17 25 25 C 1.40888 * 119.79168 * 0.27218 * 16 15 14 26 26 C 1.36313 * 119.89186 * 0.02562 * 25 16 15 27 27 H 1.08991 * 109.47462 * 305.51800 * 1 2 3 28 28 H 1.09007 * 109.46991 * 65.51813 * 1 2 3 29 29 H 1.08999 * 109.46871 * 185.51505 * 1 2 3 30 30 H 1.09000 * 109.47076 * 60.00280 * 5 2 1 31 31 H 1.09003 * 109.47177 * 299.99847 * 5 2 1 32 32 H 1.08996 * 109.46940 * 59.99853 * 6 5 2 33 33 H 1.08994 * 109.46822 * 299.99961 * 6 5 2 34 34 H 1.09000 * 109.47256 * 59.99971 * 7 6 5 35 35 H 1.08994 * 109.47508 * 299.99501 * 7 6 5 36 36 H 1.09000 * 109.47066 * 60.00237 * 8 7 6 37 37 H 1.08994 * 109.47133 * 300.00112 * 8 7 6 38 38 H 1.09000 * 109.47033 * 60.00319 * 9 8 7 39 39 H 1.09002 * 109.46906 * 300.00307 * 9 8 7 40 40 H 0.97001 * 120.00109 * 0.02562 * 10 9 8 41 41 H 1.08000 * 119.94850 * 0.03457 * 14 13 11 42 42 H 1.08004 * 120.05046 * 179.74690 * 15 14 13 43 43 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.05374 * 180.02562 * 25 16 15 45 45 H 1.07999 * 119.94443 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6154 6 6 3.7054 -0.8183 1.7986 7 6 4.0213 -1.4392 3.1607 8 6 5.5382 -1.5225 3.3437 9 6 5.8542 -2.1429 4.7062 10 7 7.3065 -2.2221 4.8816 11 6 7.8211 -2.7387 6.0151 12 8 7.0800 -3.1386 6.8922 13 6 9.2846 -2.8180 6.1921 14 6 10.1360 -2.3513 5.1833 15 6 11.4880 -2.4273 5.3401 16 6 12.0283 -2.9665 6.5242 17 6 13.4272 -3.0415 6.6938 18 1 13.8509 -3.0518 7.6872 19 6 14.2671 -3.1027 5.5726 20 7 13.7755 -3.4212 4.4048 21 14 16.0888 -2.7290 5.7487 22 1 16.6998 -3.6846 6.7073 23 1 16.7517 -2.8629 4.4267 24 1 16.2634 -1.3430 6.2525 25 6 11.1676 -3.4301 7.5387 26 6 9.8170 -3.3555 7.3703 27 1 -0.3634 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0988 30 1 1.7610 -1.7368 1.6666 31 1 1.7609 -0.1169 2.4043 32 1 4.1327 0.1832 1.7474 33 1 4.1335 -1.4367 1.0097 34 1 3.5940 -2.4407 3.2114 35 1 3.5933 -0.8212 3.9499 36 1 5.9658 -0.5212 3.2929 37 1 5.9659 -2.1408 2.5545 38 1 5.4265 -3.1442 4.7574 39 1 5.4264 -1.5243 5.4951 40 1 7.8977 -1.9028 4.1820 41 1 9.7209 -1.9337 4.2779 42 1 12.1439 -2.0708 4.5596 43 1 14.3564 -3.4632 3.6291 44 1 11.5773 -3.8439 8.4484 45 1 9.1564 -3.7110 8.1473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275003409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -139.202374 kcal Electronic energy + Delta-G solvation = -25218.086894 eV Core-core repulsion = 21325.600960 eV Total energy + Delta-G solvation = -3892.485934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77147 -38.96078 -37.95569 -37.46846 -36.97811 -35.66483 -35.42308 -32.62651 -31.51946 -31.27757 -30.32465 -28.17152 -26.79672 -23.95596 -23.08024 -22.61347 -22.22268 -21.09878 -19.72638 -19.36340 -18.40237 -17.53119 -17.31519 -17.25438 -16.87794 -16.76526 -16.73061 -15.85568 -15.75114 -15.50540 -15.05108 -14.82781 -14.48280 -14.28531 -13.93144 -13.89633 -13.88730 -13.70432 -13.46276 -13.40705 -13.19197 -13.06981 -12.99091 -12.85118 -12.65146 -12.54062 -12.36684 -12.19001 -12.15561 -11.89653 -11.78554 -11.49066 -11.36867 -11.20334 -11.11774 -10.68669 -10.05336 -9.57570 -9.39735 -8.78658 -6.48644 -0.87114 0.44029 1.14714 1.39300 1.44764 1.52489 1.94545 2.12468 2.18351 2.41355 2.79164 2.79589 3.17029 3.65797 3.68799 3.84184 3.87346 4.11589 4.13310 4.24800 4.28979 4.30792 4.40474 4.44417 4.47052 4.54688 4.75276 4.82068 4.91078 4.91630 4.94300 5.01131 5.02938 5.10634 5.15868 5.29859 5.32298 5.38765 5.57343 5.62087 5.82251 5.94439 5.99220 6.22777 6.53827 6.71740 6.77150 6.88830 7.44539 8.16479 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.001575 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.852248 B =17773.077353 C =18985.091087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.414 3.586 3 O -0.993 6.993 4 O -0.993 6.993 5 C -0.596 4.596 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.121 3.879 10 N -0.728 5.728 11 C 0.570 3.430 12 O -0.608 6.608 13 C -0.295 4.295 14 C -0.054 4.054 15 C -0.197 4.197 16 C 0.101 3.899 17 C -0.475 4.475 18 H 0.086 0.914 19 C 0.038 3.962 20 N -0.800 5.800 21 Si 0.988 3.012 22 H -0.259 1.259 23 H -0.264 1.264 24 H -0.258 1.258 25 C -0.252 4.252 26 C -0.034 4.034 27 H 0.153 0.847 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 6.502 -9.920 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.603 3.397 3 O -0.990 6.990 4 O -0.990 6.990 5 C -0.727 4.727 6 C -0.163 4.163 7 C -0.143 4.143 8 C -0.168 4.168 9 C -0.002 4.002 10 N -0.380 5.380 11 C 0.363 3.637 12 O -0.492 6.492 13 C -0.299 4.299 14 C -0.073 4.073 15 C -0.216 4.216 16 C 0.097 3.903 17 C -0.502 4.502 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.423 5.423 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.182 1.182 25 C -0.272 4.272 26 C -0.053 4.053 27 H 0.172 0.828 28 H 0.150 0.850 29 H 0.171 0.829 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.245 0.755 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.195 6.493 -10.297 25.314 hybrid contribution 0.637 -0.224 0.375 0.772 sum -21.558 6.270 -9.921 24.546 Atomic orbital electron populations 1.30090 1.21979 1.13851 1.13184 1.07613 0.79924 0.74207 0.77969 1.93546 1.81074 1.36910 1.87449 1.93544 1.81074 1.67634 1.56763 1.30211 1.04930 1.15971 1.21585 1.21414 0.92311 1.02979 0.99638 1.21431 0.94008 1.02424 0.96448 1.21828 0.98059 1.01933 0.94961 1.21391 0.79710 1.00771 0.98363 1.45829 1.08488 1.64328 1.19308 1.18406 0.88210 0.75736 0.81344 1.90606 1.62352 1.52323 1.43967 1.19221 0.91318 1.19826 0.99573 1.20739 0.93359 0.96655 0.96561 1.21011 0.94218 1.06254 1.00121 1.18153 0.93949 0.86530 0.91630 1.20095 0.91661 1.43477 0.94972 0.89633 1.26925 1.06551 0.90946 0.93702 1.69753 1.40796 1.30141 1.01626 0.85149 0.74797 0.80155 0.79109 1.18277 1.18824 1.18220 1.20865 0.93025 1.11361 1.01942 1.20517 0.94603 0.94708 0.95461 0.82839 0.85002 0.82863 0.82130 0.82083 0.90504 0.90592 0.90269 0.90167 0.90449 0.90591 0.92571 0.92409 0.75544 0.85793 0.86843 0.89182 0.87762 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.40 10.62 113.37 1.20 0.80 16 2 S 2.41 23.44 5.36 -56.49 -0.30 23.14 16 3 O -0.99 -19.09 18.10 -127.37 -2.31 -21.39 16 4 O -0.99 -19.21 18.10 -127.37 -2.30 -21.51 16 5 C -0.60 -2.67 5.81 71.98 0.42 -2.25 16 6 C -0.12 -1.39 5.22 30.60 0.16 -1.23 16 7 C -0.10 -1.23 5.22 30.60 0.16 -1.07 16 8 C -0.13 -2.17 5.33 30.60 0.16 -2.00 16 9 C 0.12 3.00 5.67 86.38 0.49 3.49 16 10 N -0.73 -22.97 5.50 -466.14 -2.57 -25.54 16 11 C 0.57 24.01 7.76 86.72 0.67 24.68 16 12 O -0.61 -29.03 16.32 -4.00 -0.07 -29.10 16 13 C -0.29 -13.53 5.89 -19.94 -0.12 -13.65 16 14 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 15 C -0.20 -9.74 8.63 22.47 0.19 -9.55 16 16 C 0.10 5.25 5.57 -21.28 -0.12 5.13 16 17 C -0.47 -24.06 9.05 23.46 0.21 -23.85 16 18 H 0.09 4.14 7.90 -2.91 -0.02 4.12 16 19 C 0.04 1.75 5.15 85.35 0.44 2.19 16 20 N -0.80 -38.35 10.95 21.87 0.24 -38.11 16 21 Si 0.99 34.86 29.59 68.60 2.03 36.89 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 26 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 27 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.16 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 11.14 6.47 -92.71 -0.60 10.54 16 41 H 0.12 4.40 6.37 -2.91 -0.02 4.39 16 42 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 43 H 0.30 12.69 8.29 -92.70 -0.77 11.92 16 44 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 45 H 0.10 4.83 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -79.33 390.64 -0.36 -79.69 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.39 Total: 29.22 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 4.52 Total: -33.28 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -2.33 Total: -63.65 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: -4.68 Total: -72.00 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 23.44 SS G_CDS: -0.30 Total: 23.14 kcal Total: -79.33 -0.36 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275003409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.514 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds