Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.58144 * 2 1 4 4 O 1.42099 * 108.57404 * 228.97355 * 2 1 3 5 5 C 1.81401 * 101.92055 * 114.49062 * 2 1 3 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 2 1 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.47563 * 305.00337 * 7 6 5 9 9 C 1.50700 * 109.47798 * 185.00026 * 7 6 5 10 10 O 1.21276 * 120.00273 * 240.00611 * 9 7 6 11 11 N 1.34777 * 119.99557 * 59.99557 * 9 7 6 12 12 C 1.46505 * 119.99870 * 180.02562 * 11 9 7 13 13 C 1.52991 * 109.47255 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47166 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00460 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00165 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47236 * 89.99640 * 18 16 14 20 20 H 1.48495 * 109.47182 * 209.99906 * 18 16 14 21 21 H 1.48501 * 109.47109 * 330.00151 * 18 16 14 22 22 C 1.50707 * 109.46966 * 64.99950 * 7 6 5 23 23 C 1.38237 * 120.00000 * 59.73266 * 22 7 6 24 24 C 1.38232 * 119.99708 * 179.81086 * 23 22 7 25 25 C 1.38228 * 120.00187 * 0.39316 * 24 23 22 26 26 C 1.38231 * 120.00006 * 359.85615 * 25 24 23 27 27 C 1.38230 * 120.00353 * 359.95675 * 26 25 24 28 28 H 1.09006 * 109.46416 * 305.51350 * 1 2 3 29 29 H 1.08998 * 109.46669 * 65.50845 * 1 2 3 30 30 H 1.08991 * 109.47334 * 185.51185 * 1 2 3 31 31 H 1.09002 * 109.47085 * 299.99728 * 5 2 1 32 32 H 1.09001 * 109.47417 * 59.99854 * 5 2 1 33 33 H 1.09002 * 109.47153 * 299.99990 * 6 5 2 34 34 H 1.08998 * 109.47533 * 59.99620 * 6 5 2 35 35 H 0.96996 * 120.00221 * 0.02562 * 11 9 7 36 36 H 1.09001 * 109.47365 * 300.00821 * 12 11 9 37 37 H 1.09000 * 109.47095 * 60.00128 * 12 11 9 38 38 H 1.09004 * 109.47022 * 300.00070 * 13 12 11 39 39 H 1.09000 * 109.47256 * 59.99869 * 13 12 11 40 40 H 0.97001 * 120.00055 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.99862 * 359.97438 * 23 22 7 42 42 H 1.08004 * 119.99239 * 180.22645 * 24 23 22 43 43 H 1.08006 * 120.00031 * 179.83633 * 25 24 23 44 44 H 1.08007 * 120.00072 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00416 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7979 7 6 4.0216 -1.4397 3.1604 8 1 3.5203 -0.8709 3.9436 9 6 5.5103 -1.4101 3.3927 10 8 6.1181 -2.4456 3.5634 11 7 6.1662 -0.2328 3.4106 12 6 7.6135 -0.2041 3.6358 13 6 8.1052 1.2444 3.6089 14 6 9.5940 1.2740 3.8400 15 1 10.1355 0.3519 3.9914 16 6 10.2650 2.4783 3.8592 17 7 11.5642 2.5042 4.0614 18 14 9.3285 4.0735 3.5981 19 1 8.8636 4.5948 4.9086 20 1 10.2209 5.0720 2.9564 21 1 8.1565 3.8216 2.7217 22 6 3.5372 -2.8665 3.1876 23 6 4.0309 -3.7815 2.2766 24 6 3.5894 -5.0912 2.3041 25 6 2.6483 -5.4839 3.2373 26 6 2.1508 -4.5677 4.1449 27 6 2.5951 -3.2589 4.1200 28 1 -0.3632 0.5970 0.8366 29 1 -0.3632 0.4260 -0.9352 30 1 -0.3633 -1.0228 0.0987 31 1 1.7611 -0.1172 2.4042 32 1 1.7610 -1.7371 1.6664 33 1 4.1328 -1.4385 1.0088 34 1 4.1336 0.1813 1.7465 35 1 5.6800 0.5954 3.2743 36 1 7.8391 -0.6460 4.6064 37 1 8.1145 -0.7728 2.8525 38 1 7.8796 1.6867 2.6385 39 1 7.6041 1.8129 4.3925 40 1 12.0363 3.3515 4.0746 41 1 4.7634 -3.4738 1.5451 42 1 3.9779 -5.8069 1.5946 43 1 2.3015 -6.5065 3.2570 44 1 1.4152 -4.8744 4.8738 45 1 2.2061 -2.5430 4.8289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279893826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -92.905476 kcal Electronic energy + Delta-G solvation = -27042.377812 eV Core-core repulsion = 23151.899463 eV Total energy + Delta-G solvation = -3890.478349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40464 -38.64362 -37.29776 -36.36254 -35.52522 -35.02998 -32.78301 -31.28625 -30.97889 -30.32428 -30.02012 -27.82379 -24.78785 -23.48847 -22.58253 -21.72642 -20.80804 -19.78344 -19.20014 -17.45133 -17.23347 -16.87704 -16.65550 -16.45006 -16.15601 -15.71444 -15.39962 -14.83567 -14.72252 -14.61633 -14.18327 -13.85344 -13.65643 -13.59926 -13.51324 -13.38402 -13.20114 -12.82181 -12.61353 -12.44852 -12.38387 -12.31622 -12.27856 -11.70720 -11.48829 -11.43473 -11.22925 -11.19234 -11.05134 -10.81332 -10.39237 -10.26407 -9.95362 -9.53641 -9.30845 -8.98489 -8.83700 -8.65252 -8.55829 -6.10570 -4.10916 -0.41769 1.20434 1.31993 2.35283 2.79698 3.24666 3.26476 3.34865 3.36271 3.42289 3.61461 3.79076 4.10888 4.19983 4.34045 4.38734 4.41933 4.55349 4.66631 4.77272 4.88459 4.97348 5.03824 5.04635 5.17354 5.22466 5.23618 5.32485 5.40762 5.46132 5.63628 5.85085 5.93880 6.09539 6.18888 6.32591 6.41548 6.49510 6.54801 6.70019 6.88058 7.12265 7.22730 7.66616 7.83508 8.42468 8.50263 8.93569 9.49538 11.02441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009506 B = 0.003271 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.847348 B = 8557.514020 C =10878.357081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.419 3.581 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.610 4.610 6 C -0.102 4.102 7 C -0.062 4.062 8 H 0.108 0.892 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.725 5.725 12 C 0.130 3.870 13 C -0.023 4.023 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.064 4.064 23 C -0.083 4.083 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.214 -9.401 -4.520 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.600 3.400 3 O -0.932 6.932 4 O -0.933 6.933 5 C -0.739 4.739 6 C -0.141 4.141 7 C -0.084 4.084 8 H 0.126 0.874 9 C 0.293 3.707 10 O -0.408 6.408 11 N -0.375 5.375 12 C 0.008 3.992 13 C -0.061 4.061 14 C -0.562 4.562 15 H 0.093 0.907 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.065 4.065 23 C -0.101 4.101 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.132 4.132 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.012 -9.718 -5.046 30.076 hybrid contribution -1.179 1.027 0.612 1.679 sum -29.191 -8.691 -4.434 30.778 Atomic orbital electron populations 1.30288 1.27093 1.11518 1.11787 1.07930 0.78279 0.75943 0.77799 1.93629 1.78819 1.34322 1.86431 1.93618 1.78838 1.66980 1.53850 1.30367 1.05655 1.14479 1.23388 1.21345 0.91366 1.03375 0.98007 1.20327 0.94365 0.94992 0.98740 0.87397 1.20230 0.88584 0.84260 0.77605 1.90725 1.68755 1.32495 1.48826 1.46359 1.10890 1.08017 1.72269 1.21532 0.76439 1.00158 1.01086 1.19804 0.98006 0.91192 0.97056 1.20908 0.90192 0.95081 1.49984 0.90651 1.25000 0.94770 0.99127 0.94362 1.69903 1.07654 1.26552 1.49570 0.86763 0.80217 0.83398 0.78795 1.20243 1.21240 1.18922 1.19270 0.96873 0.93890 0.96455 1.20999 0.97819 0.93078 0.98254 1.21141 0.97505 0.96050 0.99113 1.21135 0.97618 0.99373 0.95832 1.21048 1.00681 0.93403 0.99242 1.20983 0.97655 0.96439 0.98153 0.85323 0.85287 0.85365 0.84479 0.84542 0.89102 0.88944 0.77010 0.91931 0.91828 0.95865 0.96425 0.92538 0.86001 0.86039 0.86315 0.86244 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.98 10.62 101.05 1.07 -0.91 16 2 S 2.42 16.43 5.36 -107.50 -0.58 15.86 16 3 O -0.93 -10.22 18.10 -57.83 -1.05 -11.26 16 4 O -0.94 -10.26 18.10 -57.83 -1.05 -11.31 16 5 C -0.61 -3.23 5.62 37.16 0.21 -3.02 16 6 C -0.10 -0.91 4.53 -26.74 -0.12 -1.04 16 7 C -0.06 -0.65 2.38 -92.92 -0.22 -0.87 16 8 H 0.11 0.86 7.88 -51.93 -0.41 0.45 16 9 C 0.51 7.78 7.03 -10.98 -0.08 7.70 16 10 O -0.53 -10.25 15.13 5.56 0.08 -10.17 16 11 N -0.72 -11.39 5.42 -60.30 -0.33 -11.72 16 12 C 0.13 2.61 5.61 -4.04 -0.02 2.58 16 13 C -0.02 -0.52 4.16 -27.89 -0.12 -0.63 16 14 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 18 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 22 C -0.06 -0.71 3.37 -104.62 -0.35 -1.07 16 23 C -0.08 -1.00 7.88 -39.58 -0.31 -1.32 16 24 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 25 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 26 C -0.13 -1.12 10.05 -39.59 -0.40 -1.52 16 27 C -0.11 -1.08 9.67 -39.58 -0.38 -1.47 16 28 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 29 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.14 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.14 0.55 7.38 -51.92 -0.38 0.17 16 33 H 0.09 0.88 7.21 -51.93 -0.37 0.50 16 34 H 0.09 0.78 7.43 -51.93 -0.39 0.40 16 35 H 0.40 5.11 7.83 -40.82 -0.32 4.79 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 1.53 7.49 -52.49 -0.39 1.14 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.87 7.95 -52.49 -0.42 0.46 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -39.54 387.67 -9.75 -49.29 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.84 Total: 1.52 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.95 Total: -17.84 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.45 Total: -38.39 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -2.01 Total: -32.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 16.43 SS G_CDS: -0.58 Total: 15.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.54 -9.75 -49.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279893826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.619 kcal (2) G-P(sol) polarization free energy of solvation -39.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds