Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.58144 * 2 1 4 4 O 1.42099 * 108.57404 * 228.97355 * 2 1 3 5 5 C 1.81401 * 101.92055 * 114.49062 * 2 1 3 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 2 1 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.47563 * 305.00337 * 7 6 5 9 9 C 1.50700 * 109.47798 * 185.00026 * 7 6 5 10 10 O 1.21276 * 120.00273 * 240.00611 * 9 7 6 11 11 N 1.34777 * 119.99557 * 59.99557 * 9 7 6 12 12 C 1.46505 * 119.99870 * 180.02562 * 11 9 7 13 13 C 1.52991 * 109.47255 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47166 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00460 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00165 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47236 * 89.99640 * 18 16 14 20 20 H 1.48495 * 109.47182 * 209.99906 * 18 16 14 21 21 H 1.48501 * 109.47109 * 330.00151 * 18 16 14 22 22 C 1.50707 * 109.46966 * 64.99950 * 7 6 5 23 23 C 1.38237 * 120.00000 * 59.73266 * 22 7 6 24 24 C 1.38232 * 119.99708 * 179.81086 * 23 22 7 25 25 C 1.38228 * 120.00187 * 0.39316 * 24 23 22 26 26 C 1.38231 * 120.00006 * 359.85615 * 25 24 23 27 27 C 1.38230 * 120.00353 * 359.95675 * 26 25 24 28 28 H 1.09006 * 109.46416 * 305.51350 * 1 2 3 29 29 H 1.08998 * 109.46669 * 65.50845 * 1 2 3 30 30 H 1.08991 * 109.47334 * 185.51185 * 1 2 3 31 31 H 1.09002 * 109.47085 * 299.99728 * 5 2 1 32 32 H 1.09001 * 109.47417 * 59.99854 * 5 2 1 33 33 H 1.09002 * 109.47153 * 299.99990 * 6 5 2 34 34 H 1.08998 * 109.47533 * 59.99620 * 6 5 2 35 35 H 0.96996 * 120.00221 * 0.02562 * 11 9 7 36 36 H 1.09001 * 109.47365 * 300.00821 * 12 11 9 37 37 H 1.09000 * 109.47095 * 60.00128 * 12 11 9 38 38 H 1.09004 * 109.47022 * 300.00070 * 13 12 11 39 39 H 1.09000 * 109.47256 * 59.99869 * 13 12 11 40 40 H 0.97001 * 120.00055 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.99862 * 359.97438 * 23 22 7 42 42 H 1.08004 * 119.99239 * 180.22645 * 24 23 22 43 43 H 1.08006 * 120.00031 * 179.83633 * 25 24 23 44 44 H 1.08007 * 120.00072 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00416 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7979 7 6 4.0216 -1.4397 3.1604 8 1 3.5203 -0.8709 3.9436 9 6 5.5103 -1.4101 3.3927 10 8 6.1181 -2.4456 3.5634 11 7 6.1662 -0.2328 3.4106 12 6 7.6135 -0.2041 3.6358 13 6 8.1052 1.2444 3.6089 14 6 9.5940 1.2740 3.8400 15 1 10.1355 0.3519 3.9914 16 6 10.2650 2.4783 3.8592 17 7 11.5642 2.5042 4.0614 18 14 9.3285 4.0735 3.5981 19 1 8.8636 4.5948 4.9086 20 1 10.2209 5.0720 2.9564 21 1 8.1565 3.8216 2.7217 22 6 3.5372 -2.8665 3.1876 23 6 4.0309 -3.7815 2.2766 24 6 3.5894 -5.0912 2.3041 25 6 2.6483 -5.4839 3.2373 26 6 2.1508 -4.5677 4.1449 27 6 2.5951 -3.2589 4.1200 28 1 -0.3632 0.5970 0.8366 29 1 -0.3632 0.4260 -0.9352 30 1 -0.3633 -1.0228 0.0987 31 1 1.7611 -0.1172 2.4042 32 1 1.7610 -1.7371 1.6664 33 1 4.1328 -1.4385 1.0088 34 1 4.1336 0.1813 1.7465 35 1 5.6800 0.5954 3.2743 36 1 7.8391 -0.6460 4.6064 37 1 8.1145 -0.7728 2.8525 38 1 7.8796 1.6867 2.6385 39 1 7.6041 1.8129 4.3925 40 1 12.0363 3.3515 4.0746 41 1 4.7634 -3.4738 1.5451 42 1 3.9779 -5.8069 1.5946 43 1 2.3015 -6.5065 3.2570 44 1 1.4152 -4.8744 4.8738 45 1 2.2061 -2.5430 4.8289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279893826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -123.392041 kcal Electronic energy + Delta-G solvation = -27043.699809 eV Core-core repulsion = 23151.899463 eV Total energy + Delta-G solvation = -3891.800346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42434 -39.63391 -37.93947 -37.00413 -36.66914 -36.28381 -34.77439 -32.09173 -31.93682 -31.69128 -30.33593 -28.78755 -26.52642 -24.17471 -23.30793 -22.99134 -22.41233 -20.86015 -19.75528 -19.01148 -18.34784 -17.94814 -17.33383 -17.01503 -16.98740 -16.60701 -16.50734 -16.23868 -16.01454 -15.65720 -15.27171 -14.94971 -14.85492 -14.51888 -14.16910 -14.14076 -13.88433 -13.85000 -13.53884 -13.36222 -13.23204 -13.14997 -13.05352 -12.97408 -12.93947 -12.33935 -12.22132 -12.16398 -12.02107 -11.83262 -11.77684 -11.74361 -11.52894 -11.36532 -10.79568 -10.76115 -10.06488 -9.73502 -9.60522 -8.31167 -6.38500 -0.87973 0.45010 0.57496 1.38419 1.41757 1.52828 1.60633 1.94231 2.23895 2.36171 2.78882 2.96593 3.04064 3.18164 3.42633 3.61054 3.78761 4.01885 4.06877 4.09433 4.16294 4.22606 4.29477 4.33358 4.37714 4.39438 4.42383 4.60392 4.67200 4.73208 4.74051 4.84920 4.98702 5.03513 5.10707 5.17849 5.21059 5.39017 5.41786 5.61011 5.63712 5.68281 5.73113 6.16505 6.20958 6.59163 6.70135 7.25732 7.27503 8.85749 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009506 B = 0.003271 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.847348 B = 8557.514020 C =10878.357081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.412 3.588 3 O -0.986 6.986 4 O -0.993 6.993 5 C -0.595 4.595 6 C -0.113 4.113 7 C -0.048 4.048 8 H 0.148 0.852 9 C 0.505 3.495 10 O -0.578 6.578 11 N -0.717 5.717 12 C 0.145 3.855 13 C -0.014 4.014 14 C -0.540 4.540 15 H 0.027 0.973 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.958 3.042 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.238 1.238 22 C -0.078 4.078 23 C -0.110 4.110 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.113 4.113 28 H 0.159 0.841 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.181 0.819 32 H 0.154 0.846 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.414 0.586 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.461 -8.240 -3.222 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.600 3.400 3 O -0.983 6.983 4 O -0.991 6.991 5 C -0.725 4.725 6 C -0.152 4.152 7 C -0.070 4.070 8 H 0.165 0.835 9 C 0.292 3.708 10 O -0.457 6.457 11 N -0.369 5.369 12 C 0.021 3.979 13 C -0.052 4.052 14 C -0.578 4.578 15 H 0.046 0.954 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.780 3.220 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.161 1.161 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.131 4.131 28 H 0.177 0.823 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.199 0.801 32 H 0.172 0.828 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.251 0.749 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -33.264 -8.552 -3.778 34.553 hybrid contribution 0.465 0.488 0.250 0.719 sum -32.800 -8.063 -3.527 33.960 Atomic orbital electron populations 1.30063 1.21219 1.13932 1.13478 1.07686 0.80322 0.74259 0.77721 1.93563 1.81113 1.36429 1.87199 1.93550 1.81221 1.67739 1.56553 1.30237 1.03010 1.16205 1.23072 1.21388 0.94319 1.02909 0.96538 1.20324 0.90181 0.95800 1.00665 0.83480 1.21181 0.90750 0.83009 0.75848 1.90706 1.70322 1.34051 1.50615 1.46113 1.08930 1.09441 1.72394 1.21003 0.79270 0.98255 0.99357 1.19661 0.94543 0.92893 0.98056 1.21257 0.93113 0.93571 1.49872 0.95416 1.26081 0.95704 1.03678 0.93802 1.70076 1.09941 1.27880 1.51211 0.85559 0.79286 0.77435 0.79754 1.18637 1.21293 1.16108 1.19380 0.97777 0.93787 0.96932 1.21016 0.98467 0.94397 0.98991 1.21327 0.98389 0.95733 1.00129 1.21454 0.96828 1.00756 0.95229 1.21454 1.00638 0.93073 0.99165 1.21330 0.96726 0.97380 0.97628 0.82274 0.84880 0.82919 0.80147 0.82802 0.91203 0.88670 0.74932 0.93730 0.94164 0.94667 0.94345 0.92308 0.88440 0.85653 0.84144 0.83330 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.22 10.62 113.37 1.20 -0.02 16 2 S 2.41 29.48 5.36 -56.49 -0.30 29.18 16 3 O -0.99 -20.90 18.10 -127.37 -2.30 -23.21 16 4 O -0.99 -22.50 18.10 -127.37 -2.30 -24.81 16 5 C -0.60 -4.34 5.62 71.98 0.40 -3.94 16 6 C -0.11 -1.86 4.53 30.59 0.14 -1.72 16 7 C -0.05 -0.90 2.38 -12.29 -0.03 -0.93 16 8 H 0.15 1.62 7.88 -2.39 -0.02 1.60 16 9 C 0.51 15.33 7.03 87.66 0.62 15.95 16 10 O -0.58 -23.10 15.13 -3.02 -0.05 -23.15 16 11 N -0.72 -22.07 5.42 -463.07 -2.51 -24.57 16 12 C 0.15 5.99 5.61 86.38 0.48 6.47 16 13 C -0.01 -0.62 4.16 29.85 0.12 -0.50 16 14 C -0.54 -31.26 9.66 25.60 0.25 -31.01 16 15 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 16 C 0.00 0.26 5.47 84.65 0.46 0.72 16 17 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 18 Si 0.96 42.90 27.47 68.60 1.88 44.79 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 22 C -0.08 -1.59 3.37 -19.86 -0.07 -1.66 16 23 C -0.11 -2.72 7.88 22.27 0.18 -2.54 16 24 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 25 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 27 C -0.11 -1.71 9.67 22.27 0.22 -1.49 16 28 H 0.16 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.15 -0.34 8.14 -2.40 -0.02 -0.36 16 31 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.15 0.67 7.38 -2.39 -0.02 0.65 16 33 H 0.07 1.43 7.21 -2.39 -0.02 1.42 16 34 H 0.09 1.48 7.43 -2.39 -0.02 1.46 16 35 H 0.41 9.76 7.83 -92.71 -0.73 9.04 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.51 7.20 -2.38 -0.02 1.49 16 39 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.10 2.75 7.49 -2.91 -0.02 2.73 16 42 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 45 H 0.15 1.32 7.95 -2.91 -0.02 1.29 16 Total: -1.00 -93.33 387.67 -0.43 -93.76 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.21 Total: 14.49 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.65 Total: -26.75 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.21 Total: -84.30 kcal Atomic # 8 Polarization: -66.51 SS G_CDS: -4.66 Total: -71.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 29.48 SS G_CDS: -0.30 Total: 29.18 kcal Total: -93.33 -0.43 -93.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279893826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.632 kcal (2) G-P(sol) polarization free energy of solvation -93.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds