Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42107 * 108.57640 * 2 1 4 4 O 1.42101 * 108.58050 * 228.97655 * 2 1 3 5 5 C 1.81399 * 101.92362 * 114.48707 * 2 1 3 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 2 1 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.47146 * 54.99480 * 7 6 5 9 9 C 1.50697 * 109.47301 * 175.00426 * 7 6 5 10 10 O 1.21280 * 119.99974 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99850 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99634 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47048 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47250 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00039 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00371 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46887 * 89.99852 * 18 16 14 20 20 H 1.48499 * 109.47334 * 210.00042 * 18 16 14 21 21 H 1.48500 * 109.46976 * 330.00087 * 18 16 14 22 22 C 1.50703 * 109.46993 * 295.00143 * 7 6 5 23 23 C 1.38237 * 120.00123 * 299.72569 * 22 7 6 24 24 C 1.38236 * 120.00036 * 179.78582 * 23 22 7 25 25 C 1.38237 * 119.99796 * 0.44532 * 24 23 22 26 26 C 1.38227 * 119.99989 * 359.80576 * 25 24 23 27 27 C 1.38235 * 120.00002 * 119.99794 * 22 7 6 28 28 H 1.08997 * 109.47291 * 305.50850 * 1 2 3 29 29 H 1.09002 * 109.47649 * 65.51319 * 1 2 3 30 30 H 1.09003 * 109.46904 * 185.51523 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00212 * 5 2 1 32 32 H 1.09001 * 109.46593 * 60.00209 * 5 2 1 33 33 H 1.09000 * 109.47486 * 299.99969 * 6 5 2 34 34 H 1.09001 * 109.47362 * 60.00691 * 6 5 2 35 35 H 0.96997 * 120.00076 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47807 * 299.99895 * 12 11 9 37 37 H 1.09000 * 109.46806 * 60.00339 * 12 11 9 38 38 H 1.08998 * 109.47477 * 300.00701 * 13 12 11 39 39 H 1.09006 * 109.46696 * 60.00181 * 13 12 11 40 40 H 0.96995 * 120.00420 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.99558 * 0.02562 * 23 22 7 42 42 H 1.07999 * 119.99791 * 180.27236 * 24 23 22 43 43 H 1.08003 * 119.99870 * 179.83495 * 25 24 23 44 44 H 1.08011 * 120.00043 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00141 * 359.97438 * 27 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7978 7 6 4.0217 -1.4406 3.1599 8 1 3.5196 -2.4043 3.2451 9 6 5.5103 -1.6363 3.2894 10 8 6.2459 -1.3114 2.3816 11 7 6.0240 -2.1732 4.4138 12 6 7.4711 -2.3639 4.5395 13 6 7.7872 -2.9849 5.9017 14 6 9.2758 -3.1805 6.0313 15 1 9.9310 -2.8905 5.2231 16 6 9.8014 -3.7296 7.1815 17 7 11.1005 -3.9009 7.2945 18 14 8.6682 -4.2319 8.5791 19 1 8.2488 -5.6442 8.3931 20 1 9.3859 -4.0948 9.8719 21 1 7.4691 -3.3559 8.5833 22 6 3.5384 -0.5241 4.2542 23 6 4.0414 0.7598 4.3530 24 6 3.5948 1.6019 5.3541 25 6 2.6521 1.1572 6.2620 26 6 2.1530 -0.1283 6.1664 27 6 2.5963 -0.9690 5.1627 28 1 -0.3634 0.5969 0.8365 29 1 -0.3634 0.4259 -0.9352 30 1 -0.3633 -1.0229 0.0988 31 1 1.7610 -0.1171 2.4042 32 1 1.7611 -1.7370 1.6664 33 1 4.1328 -1.4383 1.0087 34 1 4.1336 0.1816 1.7465 35 1 5.4356 -2.4340 5.1395 36 1 7.8204 -3.0266 3.7479 37 1 7.9732 -1.4002 4.4546 38 1 7.4380 -2.3219 6.6932 39 1 7.2850 -3.9485 5.9870 40 1 11.4703 -4.2868 8.1038 41 1 4.7804 1.1060 3.6456 42 1 3.9846 2.6064 5.4286 43 1 2.3051 1.8143 7.0458 44 1 1.4160 -0.4756 6.8756 45 1 2.2062 -1.9734 5.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279893829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -95.731839 kcal Electronic energy + Delta-G solvation = -27050.759597 eV Core-core repulsion = 23160.158687 eV Total energy + Delta-G solvation = -3890.600910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.41959 -38.74234 -37.27303 -36.33486 -35.56246 -34.85740 -32.84343 -31.46771 -31.10101 -30.11662 -30.04051 -27.84813 -24.92896 -23.31956 -22.65086 -21.76674 -20.80060 -19.72925 -19.18356 -17.48074 -17.27179 -16.95262 -16.67965 -16.44061 -16.04471 -15.84885 -15.25420 -14.90222 -14.74409 -14.65075 -14.20987 -13.80746 -13.67076 -13.63313 -13.51507 -13.49038 -13.17357 -12.75933 -12.63171 -12.52476 -12.36990 -12.28113 -12.16248 -11.66847 -11.51038 -11.42652 -11.23534 -11.22820 -11.05345 -10.79248 -10.41644 -10.30150 -9.98985 -9.67550 -9.34344 -9.12377 -8.86346 -8.65802 -8.55030 -6.12326 -4.12480 -0.39199 1.08755 1.19705 2.38647 2.81823 3.21663 3.23391 3.31146 3.32479 3.46110 3.63226 3.63677 4.26030 4.26944 4.34532 4.36179 4.44118 4.54892 4.66785 4.76202 4.80211 4.94533 5.03088 5.13115 5.16625 5.20489 5.22421 5.28083 5.37737 5.58707 5.75046 5.79744 5.85072 6.08411 6.18434 6.24398 6.32854 6.36297 6.53944 6.71009 6.77325 7.10948 7.21303 7.65023 7.84229 8.41166 8.49849 8.92142 9.47730 11.00742 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002747 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.210395 B =10191.591009 C =11352.361029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.420 3.580 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.610 4.610 6 C -0.088 4.088 7 C -0.061 4.061 8 H 0.108 0.892 9 C 0.513 3.487 10 O -0.541 6.541 11 N -0.720 5.720 12 C 0.129 3.871 13 C -0.021 4.021 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.081 4.081 23 C -0.105 4.105 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.459 8.156 -6.976 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.739 4.739 6 C -0.126 4.126 7 C -0.084 4.084 8 H 0.126 0.874 9 C 0.298 3.702 10 O -0.418 6.418 11 N -0.369 5.369 12 C 0.007 3.993 13 C -0.059 4.059 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.081 4.081 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.132 4.132 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.229 0.771 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.183 8.621 -8.174 29.666 hybrid contribution -1.396 -0.785 1.998 2.561 sum -28.579 7.836 -6.176 30.271 Atomic orbital electron populations 1.30299 1.27214 1.11501 1.11736 1.07890 0.78162 0.75986 0.77812 1.93614 1.78806 1.34443 1.86490 1.93617 1.78816 1.66992 1.53969 1.30369 1.06309 1.14148 1.23119 1.21124 0.89948 1.04162 0.97412 1.20320 0.94245 0.99726 0.94072 0.87430 1.20208 0.89405 0.77871 0.82758 1.90717 1.61040 1.50650 1.39404 1.46280 1.10314 1.62554 1.17738 1.21533 0.76887 1.00872 0.99972 1.19785 0.98575 0.95617 0.91902 1.20913 0.89776 1.41964 1.03444 0.90607 1.25000 0.94961 0.95051 0.98262 1.69903 1.11124 1.44561 1.28043 0.86757 0.81232 0.79273 0.81847 1.20226 1.21261 1.19096 1.19514 0.97669 0.94601 0.96335 1.21134 0.99297 0.93348 0.98521 1.21180 0.97147 0.99933 0.94896 1.21196 0.97358 0.96217 0.98958 1.21121 1.00292 0.94112 0.98219 1.21058 0.97418 0.99790 0.94979 0.85378 0.85311 0.85357 0.84763 0.84704 0.88630 0.89181 0.77054 0.91839 0.91895 0.96054 0.96508 0.92542 0.85665 0.85814 0.86092 0.85990 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.08 10.62 101.05 1.07 -1.01 16 2 S 2.42 17.51 5.36 -107.50 -0.58 16.93 16 3 O -0.94 -10.65 18.10 -57.83 -1.05 -11.70 16 4 O -0.94 -10.62 18.10 -57.83 -1.05 -11.67 16 5 C -0.61 -3.60 5.62 37.16 0.21 -3.39 16 6 C -0.09 -0.90 3.94 -26.73 -0.11 -1.00 16 7 C -0.06 -0.65 2.38 -92.92 -0.22 -0.87 16 8 H 0.11 0.86 7.88 -51.93 -0.41 0.45 16 9 C 0.51 7.95 6.78 -10.99 -0.07 7.87 16 10 O -0.54 -10.45 15.92 5.56 0.09 -10.36 16 11 N -0.72 -11.59 5.46 -60.29 -0.33 -11.92 16 12 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 13 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 14 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 15 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 18 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 22 C -0.08 -0.81 3.56 -104.62 -0.37 -1.18 16 23 C -0.10 -1.17 8.76 -39.58 -0.35 -1.51 16 24 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.11 -0.95 9.67 -39.58 -0.38 -1.34 16 28 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 31 H 0.13 0.59 7.38 -51.92 -0.38 0.20 16 32 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 34 H 0.09 1.01 7.24 -51.93 -0.38 0.63 16 35 H 0.40 5.46 8.36 -40.82 -0.34 5.12 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 1.50 7.56 -52.49 -0.40 1.10 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 45 H 0.12 0.76 7.95 -52.49 -0.42 0.34 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -38.91 389.88 -9.81 -48.71 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.89 Total: 2.18 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.98 Total: -17.82 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.44 Total: -38.46 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -2.00 Total: -33.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 17.51 SS G_CDS: -0.58 Total: 16.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.91 -9.81 -48.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279893829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.019 kcal (2) G-P(sol) polarization free energy of solvation -38.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds