Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42107 * 108.57640 * 2 1 4 4 O 1.42101 * 108.58050 * 228.97655 * 2 1 3 5 5 C 1.81399 * 101.92362 * 114.48707 * 2 1 3 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 2 1 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.47146 * 54.99480 * 7 6 5 9 9 C 1.50697 * 109.47301 * 175.00426 * 7 6 5 10 10 O 1.21280 * 119.99974 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99850 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99634 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47048 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47250 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00196 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00039 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00371 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46887 * 89.99852 * 18 16 14 20 20 H 1.48499 * 109.47334 * 210.00042 * 18 16 14 21 21 H 1.48500 * 109.46976 * 330.00087 * 18 16 14 22 22 C 1.50703 * 109.46993 * 295.00143 * 7 6 5 23 23 C 1.38237 * 120.00123 * 299.72569 * 22 7 6 24 24 C 1.38236 * 120.00036 * 179.78582 * 23 22 7 25 25 C 1.38237 * 119.99796 * 0.44532 * 24 23 22 26 26 C 1.38227 * 119.99989 * 359.80576 * 25 24 23 27 27 C 1.38235 * 120.00002 * 119.99794 * 22 7 6 28 28 H 1.08997 * 109.47291 * 305.50850 * 1 2 3 29 29 H 1.09002 * 109.47649 * 65.51319 * 1 2 3 30 30 H 1.09003 * 109.46904 * 185.51523 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00212 * 5 2 1 32 32 H 1.09001 * 109.46593 * 60.00209 * 5 2 1 33 33 H 1.09000 * 109.47486 * 299.99969 * 6 5 2 34 34 H 1.09001 * 109.47362 * 60.00691 * 6 5 2 35 35 H 0.96997 * 120.00076 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47807 * 299.99895 * 12 11 9 37 37 H 1.09000 * 109.46806 * 60.00339 * 12 11 9 38 38 H 1.08998 * 109.47477 * 300.00701 * 13 12 11 39 39 H 1.09006 * 109.46696 * 60.00181 * 13 12 11 40 40 H 0.96995 * 120.00420 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.99558 * 0.02562 * 23 22 7 42 42 H 1.07999 * 119.99791 * 180.27236 * 24 23 22 43 43 H 1.08003 * 119.99870 * 179.83495 * 25 24 23 44 44 H 1.08011 * 120.00043 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00141 * 359.97438 * 27 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7978 7 6 4.0217 -1.4406 3.1599 8 1 3.5196 -2.4043 3.2451 9 6 5.5103 -1.6363 3.2894 10 8 6.2459 -1.3114 2.3816 11 7 6.0240 -2.1732 4.4138 12 6 7.4711 -2.3639 4.5395 13 6 7.7872 -2.9849 5.9017 14 6 9.2758 -3.1805 6.0313 15 1 9.9310 -2.8905 5.2231 16 6 9.8014 -3.7296 7.1815 17 7 11.1005 -3.9009 7.2945 18 14 8.6682 -4.2319 8.5791 19 1 8.2488 -5.6442 8.3931 20 1 9.3859 -4.0948 9.8719 21 1 7.4691 -3.3559 8.5833 22 6 3.5384 -0.5241 4.2542 23 6 4.0414 0.7598 4.3530 24 6 3.5948 1.6019 5.3541 25 6 2.6521 1.1572 6.2620 26 6 2.1530 -0.1283 6.1664 27 6 2.5963 -0.9690 5.1627 28 1 -0.3634 0.5969 0.8365 29 1 -0.3634 0.4259 -0.9352 30 1 -0.3633 -1.0229 0.0988 31 1 1.7610 -0.1171 2.4042 32 1 1.7611 -1.7370 1.6664 33 1 4.1328 -1.4383 1.0087 34 1 4.1336 0.1816 1.7465 35 1 5.4356 -2.4340 5.1395 36 1 7.8204 -3.0266 3.7479 37 1 7.9732 -1.4002 4.4546 38 1 7.4380 -2.3219 6.6932 39 1 7.2850 -3.9485 5.9870 40 1 11.4703 -4.2868 8.1038 41 1 4.7804 1.1060 3.6456 42 1 3.9846 2.6064 5.4286 43 1 2.3051 1.8143 7.0458 44 1 1.4160 -0.4756 6.8756 45 1 2.2062 -1.9734 5.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279893829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -125.889573 kcal Electronic energy + Delta-G solvation = -27052.067334 eV Core-core repulsion = 23160.158687 eV Total energy + Delta-G solvation = -3891.908647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -41.43629 -39.71696 -37.96800 -37.03920 -36.82361 -36.02905 -34.81927 -32.46809 -31.77111 -31.59325 -30.36328 -28.75497 -26.65696 -24.07297 -23.35192 -22.97312 -22.44244 -20.80881 -19.79397 -19.01795 -18.44089 -17.97351 -17.45565 -17.04803 -16.80370 -16.70513 -16.58879 -16.23719 -16.03891 -15.62965 -15.30273 -14.94559 -14.80234 -14.54150 -14.24708 -14.16932 -13.87653 -13.86441 -13.54990 -13.37357 -13.27602 -13.09465 -13.06412 -13.00527 -12.91551 -12.35691 -12.20625 -12.17715 -12.04344 -11.85154 -11.77592 -11.77176 -11.54004 -11.35636 -10.93129 -10.79955 -10.08591 -9.78983 -9.61799 -8.31133 -6.38934 -0.90235 0.39131 0.52913 1.37795 1.41222 1.52458 1.59207 1.92766 2.19496 2.36073 2.78754 2.88361 3.03733 3.15109 3.53274 3.59938 3.77704 3.99019 4.00534 4.12508 4.15186 4.19578 4.28124 4.33597 4.36472 4.38808 4.43823 4.62281 4.64899 4.72060 4.74421 4.83976 5.00795 5.05814 5.09423 5.14162 5.19336 5.37675 5.40499 5.59874 5.62545 5.66491 5.67454 6.12641 6.20618 6.56725 6.69325 7.23934 7.26010 8.85837 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002747 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.210395 B =10191.591009 C =11352.361029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.407 3.593 3 O -0.994 6.994 4 O -0.991 6.991 5 C -0.594 4.594 6 C -0.098 4.098 7 C -0.047 4.047 8 H 0.150 0.850 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.710 5.710 12 C 0.144 3.856 13 C -0.010 4.010 14 C -0.541 4.541 15 H 0.026 0.974 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.961 3.039 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.237 1.237 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.293 6.670 -4.174 35.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.596 3.404 3 O -0.992 6.992 4 O -0.989 6.989 5 C -0.724 4.724 6 C -0.137 4.137 7 C -0.069 4.069 8 H 0.167 0.833 9 C 0.296 3.704 10 O -0.469 6.469 11 N -0.361 5.361 12 C 0.020 3.980 13 C -0.047 4.047 14 C -0.579 4.579 15 H 0.044 0.956 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.783 3.217 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.160 1.160 22 C -0.089 4.089 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.122 4.122 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.196 0.804 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.249 0.751 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -33.015 7.154 -5.396 34.209 hybrid contribution 0.448 -0.256 1.084 1.201 sum -32.566 6.899 -4.312 33.567 Atomic orbital electron populations 1.30038 1.20558 1.14320 1.13393 1.07787 0.80574 0.74271 0.77797 1.93543 1.81366 1.36962 1.87301 1.93549 1.81328 1.67583 1.56397 1.30221 1.03066 1.17033 1.22093 1.21109 0.93258 1.02407 0.96924 1.20309 0.90083 1.02003 0.94514 0.83292 1.21197 0.91687 0.76115 0.81435 1.90700 1.62911 1.52262 1.41058 1.46012 1.08421 1.62848 1.18806 1.21020 0.79666 0.98942 0.98376 1.19620 0.95020 0.96919 0.93170 1.21251 0.92338 1.41936 1.02386 0.95571 1.26118 0.96802 0.94807 1.01681 1.70083 1.13794 1.45952 1.29278 0.85512 0.79427 0.79844 0.76933 1.18695 1.21266 1.15978 1.19433 0.98842 0.93728 0.96885 1.21103 0.99890 0.94820 0.99013 1.21311 0.98077 1.00124 0.95268 1.21498 0.96492 0.97198 0.98702 1.21511 1.00178 0.93468 0.98329 1.21387 0.95974 1.01217 0.93597 0.82658 0.84708 0.82197 0.82401 0.80362 0.90484 0.91784 0.75058 0.93709 0.94380 0.94775 0.94386 0.92302 0.88520 0.85699 0.84193 0.83072 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.45 10.62 113.37 1.20 -0.25 16 2 S 2.41 33.70 5.36 -56.49 -0.30 33.40 16 3 O -0.99 -24.17 18.10 -127.37 -2.31 -26.47 16 4 O -0.99 -23.36 18.10 -127.37 -2.31 -25.66 16 5 C -0.59 -5.43 5.62 71.98 0.40 -5.02 16 6 C -0.10 -2.01 3.94 30.60 0.12 -1.89 16 7 C -0.05 -0.91 2.38 -12.28 -0.03 -0.94 16 8 H 0.15 1.66 7.88 -2.39 -0.02 1.64 16 9 C 0.51 15.86 6.78 87.66 0.59 16.45 16 10 O -0.59 -24.28 15.92 -3.03 -0.05 -24.33 16 11 N -0.71 -22.27 5.46 -463.06 -2.53 -24.79 16 12 C 0.14 5.99 5.61 86.38 0.48 6.48 16 13 C -0.01 -0.43 4.16 29.85 0.12 -0.30 16 14 C -0.54 -31.18 9.66 25.60 0.25 -30.94 16 15 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 18 Si 0.96 42.08 27.47 68.60 1.88 43.97 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 22 C -0.09 -1.54 3.56 -19.86 -0.07 -1.62 16 23 C -0.13 -2.88 8.76 22.27 0.20 -2.69 16 24 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 26 C -0.12 -1.29 10.05 22.27 0.22 -1.07 16 27 C -0.10 -1.18 9.67 22.27 0.22 -0.96 16 28 H 0.16 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.16 0.76 7.38 -2.39 -0.02 0.74 16 32 H 0.18 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.08 1.82 7.95 -2.39 -0.02 1.81 16 34 H 0.06 1.61 7.24 -2.39 -0.02 1.59 16 35 H 0.41 10.11 8.36 -92.71 -0.78 9.34 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 39 H 0.04 1.56 7.57 -2.38 -0.02 1.54 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.10 2.60 7.56 -2.91 -0.02 2.57 16 42 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.15 0.84 8.06 -2.90 -0.02 0.82 16 45 H 0.16 0.73 7.95 -2.91 -0.02 0.71 16 Total: -1.00 -93.73 389.88 -0.52 -94.25 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.16 Total: 14.80 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.62 Total: -25.80 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.23 Total: -84.14 kcal Atomic # 8 Polarization: -71.81 SS G_CDS: -4.66 Total: -76.47 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Atomic # 16 Polarization: 33.70 SS G_CDS: -0.30 Total: 33.40 kcal Total: -93.73 -0.52 -94.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279893829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.636 kcal (2) G-P(sol) polarization free energy of solvation -93.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds