Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42890 * 114.00183 * 2 1 4 4 H 1.09008 * 109.57520 * 30.25215 * 3 2 1 5 5 C 1.52854 * 109.57509 * 270.00039 * 3 2 1 6 6 C 1.50601 * 110.48498 * 188.72812 * 5 3 2 7 7 C 1.38504 * 118.93053 * 200.45885 * 6 5 3 8 8 C 1.38120 * 120.30388 * 180.42759 * 7 6 5 9 9 C 1.38308 * 120.16448 * 359.97438 * 8 7 6 10 10 C 1.38016 * 119.90991 * 359.89238 * 9 8 7 11 11 C 1.38611 * 121.50148 * 20.69184 * 6 5 3 12 12 N 1.39910 * 120.84134 * 359.46158 * 11 6 5 13 13 S 1.65604 * 120.53811 * 193.56247 * 12 11 6 14 14 O 1.42103 * 104.27696 * 161.62677 * 13 12 11 15 15 O 1.42100 * 104.27822 * 33.77220 * 13 12 11 16 16 C 1.81398 * 104.44896 * 277.69841 * 13 12 11 17 17 C 1.52994 * 109.47089 * 180.02562 * 16 13 12 18 18 C 1.53000 * 109.47252 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.47581 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99492 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00376 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99998 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47089 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47142 * 299.99598 * 23 21 19 26 26 H 1.48504 * 109.47022 * 60.00030 * 23 21 19 27 27 C 1.46917 * 118.92211 * 13.83179 * 12 11 6 28 28 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47146 * 299.99882 * 1 2 3 30 30 H 1.09004 * 109.46886 * 59.99921 * 1 2 3 31 31 H 1.08991 * 109.30195 * 68.42043 * 5 3 2 32 32 H 1.08995 * 109.13147 * 308.92773 * 5 3 2 33 33 H 1.08003 * 119.84437 * 0.44723 * 7 6 5 34 34 H 1.08005 * 119.91691 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.04337 * 179.87905 * 9 8 7 36 36 H 1.08005 * 119.98562 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47154 * 60.00019 * 16 13 12 38 38 H 1.09001 * 109.47051 * 300.00101 * 16 13 12 39 39 H 1.09002 * 109.47711 * 60.00250 * 17 16 13 40 40 H 1.09001 * 109.47004 * 299.99820 * 17 16 13 41 41 H 1.09002 * 109.47004 * 59.99700 * 18 17 16 42 42 H 1.08994 * 109.47288 * 300.00176 * 18 17 16 43 43 H 0.97000 * 120.00522 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.79732 * 74.61887 * 27 12 11 45 45 H 1.08999 * 109.80026 * 195.47093 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3484 1.9999 0.5174 5 6 2.2186 1.7732 -1.4402 6 6 3.0204 3.0477 -1.4696 7 6 2.9585 3.8524 -2.5952 8 6 3.6891 5.0230 -2.6560 9 6 4.4879 5.3998 -1.5917 10 6 4.5532 4.6052 -0.4651 11 6 3.8179 3.4264 -0.4010 12 7 3.8953 2.6370 0.7515 13 16 4.5680 3.2386 2.1400 14 8 4.0918 2.3749 3.1629 15 8 4.2246 4.6175 2.1268 16 6 6.3542 3.0252 1.9069 17 6 7.0954 3.5495 3.1384 18 6 8.6020 3.3688 2.9421 19 6 9.3322 3.8859 4.1548 20 1 8.7771 4.3014 4.9829 21 6 10.7088 3.8285 4.2071 22 7 11.3846 3.3221 3.1990 23 14 11.6138 4.4688 5.7107 24 1 13.0760 4.2936 5.5201 25 1 11.3075 5.9099 5.8963 26 1 11.1772 3.7112 6.9110 27 6 3.3755 1.2635 0.7081 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.2489 1.9469 -1.9064 32 1 2.7511 0.9998 -1.9936 33 1 2.3358 3.5633 -3.4290 34 1 3.6359 5.6460 -3.5367 35 1 5.0598 6.3145 -1.6422 36 1 5.1763 4.8985 0.3669 37 1 6.6746 3.5808 1.0256 38 1 6.5790 1.9673 1.7711 39 1 6.7750 2.9935 4.0195 40 1 6.8706 4.6073 3.2746 41 1 8.9228 3.9245 2.0609 42 1 8.8264 2.3110 2.8061 43 1 12.3531 3.2821 3.2356 44 1 4.0633 0.6259 0.1528 45 1 3.2546 0.8823 1.7221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282185612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -94.100908 kcal Electronic energy + Delta-G solvation = -27784.781086 eV Core-core repulsion = 23894.250899 eV Total energy + Delta-G solvation = -3890.530187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57959 -38.42794 -37.20482 -36.24664 -35.92921 -34.75904 -33.38529 -32.24039 -30.46163 -29.67348 -27.90330 -26.90487 -25.49744 -23.88492 -23.27987 -22.85295 -20.64002 -20.42974 -19.14759 -17.95755 -17.40512 -17.07227 -16.72663 -15.95268 -15.77836 -15.72800 -15.40076 -15.27746 -14.67837 -14.50566 -14.34515 -14.29154 -13.89621 -13.63415 -13.30226 -13.12597 -12.68453 -12.54881 -12.34901 -12.21682 -12.03463 -11.96529 -11.90416 -11.86842 -11.56780 -11.32682 -11.15175 -10.99488 -10.92496 -10.85468 -10.69168 -10.42103 -10.00515 -9.96763 -9.45135 -9.19031 -8.90473 -8.42861 -8.14290 -6.07766 -4.11367 0.13120 1.19774 1.26566 2.34620 3.30801 3.31271 3.34895 3.37807 3.54626 3.82798 4.09602 4.15216 4.40115 4.45215 4.50231 4.66795 4.75640 4.85152 4.96562 4.98720 4.99265 5.03602 5.08449 5.22357 5.28483 5.31568 5.33875 5.40693 5.46280 5.54128 5.58478 5.67662 5.78084 5.88742 6.08740 6.18033 6.35028 6.36583 6.36858 6.44951 6.78312 6.79835 6.88454 7.53208 7.62428 7.89510 8.29209 8.94436 9.53506 11.03359 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002950 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.132192 B = 9490.669566 C =10496.158060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.081 3.919 4 H 0.072 0.928 5 C -0.095 4.095 6 C -0.117 4.117 7 C -0.090 4.090 8 C -0.147 4.147 9 C -0.080 4.080 10 C -0.166 4.166 11 C 0.184 3.816 12 N -0.940 5.940 13 S 2.585 3.415 14 O -0.948 6.948 15 O -0.943 6.943 16 C -0.603 4.603 17 C -0.106 4.106 18 C 0.032 3.968 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.287 1.287 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.109 3.891 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 -3.160 -13.571 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.090 0.910 5 C -0.132 4.132 6 C -0.121 4.121 7 C -0.108 4.108 8 C -0.166 4.166 9 C -0.099 4.099 10 C -0.187 4.187 11 C 0.087 3.913 12 N -0.763 5.763 13 S 2.684 3.316 14 O -0.938 6.938 15 O -0.933 6.933 16 C -0.736 4.736 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.722 3.278 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.016 4.016 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.362 -3.099 -12.809 25.100 hybrid contribution 0.882 0.326 0.292 0.985 sum -20.479 -2.773 -12.517 24.161 Atomic orbital electron populations 1.22843 0.80561 1.03006 1.00222 1.87880 1.20064 1.26622 1.95041 1.22311 0.94722 0.85211 0.95641 0.90982 1.20844 0.99993 0.94895 0.97459 1.19249 1.00189 0.98138 0.94545 1.20872 0.99090 0.94220 0.96649 1.21034 0.98858 0.97463 0.99216 1.20953 0.97674 0.98989 0.92247 1.21302 1.01978 0.94806 1.00589 1.17296 0.96057 0.91311 0.86613 1.56023 1.72061 1.21633 1.26580 1.06098 0.78691 0.74375 0.72386 1.93572 1.79375 1.67344 1.53545 1.93608 1.82504 1.32225 1.84971 1.30592 1.20887 1.11844 1.10267 1.21551 1.00822 1.00299 0.91849 1.19060 0.86232 0.97740 0.97621 1.21198 0.91604 1.40971 1.02891 0.92390 1.25012 0.97708 0.95206 0.96360 1.69941 1.07320 1.45225 1.30851 0.86611 0.78517 0.79537 0.83114 1.21215 1.20093 1.20097 1.21755 0.94494 0.81120 1.04192 0.89275 0.93719 0.93920 0.90273 0.89371 0.85811 0.85825 0.85136 0.84491 0.84939 0.84861 0.91403 0.91398 0.95991 0.96007 0.92781 0.89342 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.74 10.37 -35.23 -0.37 -4.11 16 3 C 0.08 0.82 2.79 -26.36 -0.07 0.75 16 4 H 0.07 0.75 7.80 -51.92 -0.40 0.34 16 5 C -0.09 -0.86 5.39 -28.01 -0.15 -1.01 16 6 C -0.12 -1.28 5.76 -104.43 -0.60 -1.88 16 7 C -0.09 -0.85 9.66 -39.53 -0.38 -1.23 16 8 C -0.15 -1.41 10.04 -39.60 -0.40 -1.80 16 9 C -0.08 -0.90 10.05 -39.64 -0.40 -1.29 16 10 C -0.17 -2.20 8.32 -39.35 -0.33 -2.53 16 11 C 0.18 2.37 6.22 -83.72 -0.52 1.85 16 12 N -0.94 -12.24 3.19 -57.87 -0.18 -12.42 16 13 S 2.58 39.68 4.80 -107.50 -0.52 39.17 16 14 O -0.95 -16.48 16.40 -57.54 -0.94 -17.42 16 15 O -0.94 -16.49 15.05 -57.54 -0.87 -17.36 16 16 C -0.60 -9.38 5.98 37.15 0.22 -9.16 16 17 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 18 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 19 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.11 1.24 6.15 -3.37 -0.02 1.21 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.08 0.58 8.06 -51.93 -0.42 0.17 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.14 1.90 4.60 -52.48 -0.24 1.66 16 37 H 0.13 1.86 7.09 -51.92 -0.37 1.50 16 38 H 0.13 1.85 8.14 -51.92 -0.42 1.42 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.12 1.35 6.70 -51.93 -0.35 1.00 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -34.06 375.61 -10.56 -44.62 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.81 Total: -0.06 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.24 Total: -28.84 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.55 Total: -38.08 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.17 Total: -38.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 39.68 SS G_CDS: -0.52 Total: 39.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.06 -10.56 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282185612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.482 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds