Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42890 * 114.00183 * 2 1 4 4 H 1.09008 * 109.57520 * 30.25215 * 3 2 1 5 5 C 1.52854 * 109.57509 * 270.00039 * 3 2 1 6 6 C 1.50601 * 110.48498 * 188.72812 * 5 3 2 7 7 C 1.38504 * 118.93053 * 200.45885 * 6 5 3 8 8 C 1.38120 * 120.30388 * 180.42759 * 7 6 5 9 9 C 1.38308 * 120.16448 * 359.97438 * 8 7 6 10 10 C 1.38016 * 119.90991 * 359.89238 * 9 8 7 11 11 C 1.38611 * 121.50148 * 20.69184 * 6 5 3 12 12 N 1.39910 * 120.84134 * 359.46158 * 11 6 5 13 13 S 1.65604 * 120.53811 * 193.56247 * 12 11 6 14 14 O 1.42103 * 104.27696 * 161.62677 * 13 12 11 15 15 O 1.42100 * 104.27822 * 33.77220 * 13 12 11 16 16 C 1.81398 * 104.44896 * 277.69841 * 13 12 11 17 17 C 1.52994 * 109.47089 * 180.02562 * 16 13 12 18 18 C 1.53000 * 109.47252 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.47581 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99492 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00376 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99998 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47089 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47142 * 299.99598 * 23 21 19 26 26 H 1.48504 * 109.47022 * 60.00030 * 23 21 19 27 27 C 1.46917 * 118.92211 * 13.83179 * 12 11 6 28 28 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47146 * 299.99882 * 1 2 3 30 30 H 1.09004 * 109.46886 * 59.99921 * 1 2 3 31 31 H 1.08991 * 109.30195 * 68.42043 * 5 3 2 32 32 H 1.08995 * 109.13147 * 308.92773 * 5 3 2 33 33 H 1.08003 * 119.84437 * 0.44723 * 7 6 5 34 34 H 1.08005 * 119.91691 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.04337 * 179.87905 * 9 8 7 36 36 H 1.08005 * 119.98562 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47154 * 60.00019 * 16 13 12 38 38 H 1.09001 * 109.47051 * 300.00101 * 16 13 12 39 39 H 1.09002 * 109.47711 * 60.00250 * 17 16 13 40 40 H 1.09001 * 109.47004 * 299.99820 * 17 16 13 41 41 H 1.09002 * 109.47004 * 59.99700 * 18 17 16 42 42 H 1.08994 * 109.47288 * 300.00176 * 18 17 16 43 43 H 0.97000 * 120.00522 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.79732 * 74.61887 * 27 12 11 45 45 H 1.08999 * 109.80026 * 195.47093 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3484 1.9999 0.5174 5 6 2.2186 1.7732 -1.4402 6 6 3.0204 3.0477 -1.4696 7 6 2.9585 3.8524 -2.5952 8 6 3.6891 5.0230 -2.6560 9 6 4.4879 5.3998 -1.5917 10 6 4.5532 4.6052 -0.4651 11 6 3.8179 3.4264 -0.4010 12 7 3.8953 2.6370 0.7515 13 16 4.5680 3.2386 2.1400 14 8 4.0918 2.3749 3.1629 15 8 4.2246 4.6175 2.1268 16 6 6.3542 3.0252 1.9069 17 6 7.0954 3.5495 3.1384 18 6 8.6020 3.3688 2.9421 19 6 9.3322 3.8859 4.1548 20 1 8.7771 4.3014 4.9829 21 6 10.7088 3.8285 4.2071 22 7 11.3846 3.3221 3.1990 23 14 11.6138 4.4688 5.7107 24 1 13.0760 4.2936 5.5201 25 1 11.3075 5.9099 5.8963 26 1 11.1772 3.7112 6.9110 27 6 3.3755 1.2635 0.7081 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.2489 1.9469 -1.9064 32 1 2.7511 0.9998 -1.9936 33 1 2.3358 3.5633 -3.4290 34 1 3.6359 5.6460 -3.5367 35 1 5.0598 6.3145 -1.6422 36 1 5.1763 4.8985 0.3669 37 1 6.6746 3.5808 1.0256 38 1 6.5790 1.9673 1.7711 39 1 6.7750 2.9935 4.0195 40 1 6.8706 4.6073 3.2746 41 1 8.9228 3.9245 2.0609 42 1 8.8264 2.3110 2.8061 43 1 12.3531 3.2821 3.2356 44 1 4.0633 0.6259 0.1528 45 1 3.2546 0.8823 1.7221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282185612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -115.907455 kcal Electronic energy + Delta-G solvation = -27785.726689 eV Core-core repulsion = 23894.250899 eV Total energy + Delta-G solvation = -3891.475790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.40985 -39.21622 -38.44361 -37.36931 -37.01028 -36.54167 -34.28635 -34.12270 -31.27986 -30.47856 -29.74977 -27.48932 -26.37322 -25.66934 -24.16827 -23.76753 -22.33220 -21.33964 -20.19347 -19.11408 -18.61707 -18.28459 -17.89981 -17.38171 -16.93663 -16.58345 -16.51109 -16.28901 -15.99901 -15.78201 -15.42098 -15.19015 -14.74476 -14.53030 -14.37811 -14.14797 -14.11327 -13.92825 -13.63440 -13.57547 -13.41863 -13.23527 -13.05798 -12.77930 -12.73830 -12.70345 -12.59652 -12.33872 -12.21952 -11.89559 -11.82658 -11.75614 -11.57820 -11.40514 -11.05803 -10.63435 -10.58788 -9.71682 -9.03324 -8.23960 -6.35490 -1.11062 0.38107 0.42278 1.23463 1.39664 1.42206 1.50163 2.38277 2.46820 2.58540 2.83597 2.94623 3.09644 3.23944 3.59149 3.66407 3.73090 3.76589 3.88907 4.00446 4.08269 4.27450 4.30312 4.42909 4.46695 4.50931 4.51448 4.56515 4.58429 4.64938 4.77974 4.83081 4.84051 4.89477 4.94013 4.99481 5.10531 5.28638 5.42127 5.51712 5.56976 5.58369 5.62715 5.76647 6.08019 6.12299 6.16626 6.79627 7.33980 8.87437 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002950 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.132192 B = 9490.669566 C =10496.158060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.392 6.392 3 C 0.083 3.917 4 H 0.066 0.934 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.086 4.086 8 C -0.142 4.142 9 C -0.093 4.093 10 C -0.195 4.195 11 C 0.158 3.842 12 N -0.935 5.935 13 S 2.611 3.389 14 O -0.970 6.970 15 O -0.966 6.966 16 C -0.603 4.603 17 C -0.104 4.104 18 C 0.033 3.967 19 C -0.554 4.554 20 H 0.062 0.938 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.963 3.037 24 H -0.281 1.281 25 H -0.267 1.267 26 H -0.267 1.267 27 C 0.098 3.902 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.265 0.735 44 H 0.103 0.897 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.628 -3.208 -15.021 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.310 6.310 3 C 0.023 3.977 4 H 0.084 0.916 5 C -0.126 4.126 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.161 4.161 9 C -0.111 4.111 10 C -0.216 4.216 11 C 0.063 3.937 12 N -0.760 5.760 13 S 2.710 3.290 14 O -0.961 6.961 15 O -0.956 6.956 16 C -0.735 4.735 17 C -0.144 4.144 18 C -0.005 4.005 19 C -0.592 4.592 20 H 0.080 0.920 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.787 3.213 24 H -0.206 1.206 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.025 4.025 28 H 0.122 0.878 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.886 -3.142 -14.251 27.143 hybrid contribution 1.281 0.321 0.633 1.465 sum -21.605 -2.821 -13.618 25.694 Atomic orbital electron populations 1.23058 0.79033 1.04279 1.00985 1.87857 1.21741 1.26282 1.95166 1.22232 0.93726 0.85420 0.96284 0.91609 1.20856 1.00956 0.94098 0.96725 1.19556 0.99649 0.99026 0.94230 1.21289 0.98722 0.93521 0.96868 1.21417 0.97519 0.97726 0.99403 1.21226 0.98350 0.99311 0.92238 1.21383 1.03030 0.95987 1.01219 1.17520 0.97478 0.91583 0.87152 1.55643 1.71842 1.22400 1.26104 1.05079 0.78028 0.73476 0.72381 1.93537 1.79624 1.67798 1.55106 1.93574 1.82703 1.33742 1.85629 1.30527 1.21364 1.12888 1.08694 1.21348 0.98059 1.00913 0.94057 1.18942 0.89539 0.95997 0.96068 1.21693 0.92462 1.41115 1.03937 0.92019 1.25935 0.98695 0.95339 0.99508 1.70062 1.07695 1.46301 1.32878 0.85531 0.77206 0.79241 0.79302 1.20605 1.19158 1.19194 1.21974 0.95959 0.80287 1.04328 0.87824 0.93789 0.92338 0.87960 0.88527 0.82473 0.82888 0.83977 0.86130 0.83729 0.83265 0.91181 0.91165 0.97798 0.97810 0.92572 0.87899 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -7.10 10.37 -148.98 -1.54 -8.64 16 3 C 0.08 1.57 2.79 30.83 0.09 1.66 16 4 H 0.07 1.30 7.80 -2.38 -0.02 1.28 16 5 C -0.09 -1.37 5.39 29.77 0.16 -1.21 16 6 C -0.12 -2.37 5.76 -19.74 -0.11 -2.48 16 7 C -0.09 -1.33 9.66 22.31 0.22 -1.12 16 8 C -0.14 -2.33 10.04 22.26 0.22 -2.10 16 9 C -0.09 -1.99 10.05 22.23 0.22 -1.76 16 10 C -0.19 -5.21 8.32 22.42 0.19 -5.02 16 11 C 0.16 4.00 6.22 38.14 0.24 4.24 16 12 N -0.93 -24.29 3.19 -337.01 -1.08 -25.36 16 13 S 2.61 81.93 4.80 -56.49 -0.27 81.65 16 14 O -0.97 -34.35 16.40 -127.65 -2.09 -36.44 16 15 O -0.97 -34.78 15.05 -127.65 -1.92 -36.70 16 16 C -0.60 -19.23 5.98 71.98 0.43 -18.80 16 17 C -0.10 -4.28 5.16 30.59 0.16 -4.12 16 18 C 0.03 1.71 4.97 29.85 0.15 1.85 16 19 C -0.55 -31.53 9.11 25.60 0.23 -31.29 16 20 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 21 C 0.00 0.21 5.46 84.66 0.46 0.67 16 22 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 23 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.10 2.19 6.15 86.59 0.53 2.72 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.10 1.11 8.06 -2.39 -0.02 1.09 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.12 3.51 4.60 -2.91 -0.01 3.50 16 37 H 0.14 4.23 7.09 -2.39 -0.02 4.21 16 38 H 0.15 4.21 8.14 -2.39 -0.02 4.19 16 39 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 41 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 2.53 6.70 -2.39 -0.02 2.51 16 Total: -1.00 -74.18 375.61 0.79 -73.38 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.98 Total: 16.81 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 4.41 Total: -55.29 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -0.79 Total: -80.95 kcal Atomic # 8 Polarization: -76.22 SS G_CDS: -5.56 Total: -81.78 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 81.93 SS G_CDS: -0.27 Total: 81.65 kcal Total: -74.18 0.79 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282185612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.524 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds