Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00595 * 2 1 4 4 C 1.52994 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47213 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47433 * 179.97438 * 5 4 3 7 7 C 1.35893 * 117.00392 * 179.97438 * 6 5 4 8 8 C 1.38736 * 120.05957 * 180.02562 * 7 6 5 9 9 C 1.38138 * 119.94337 * 180.30421 * 8 7 6 10 10 C 1.38271 * 120.05803 * 359.41293 * 9 8 7 11 11 C 1.50698 * 119.94467 * 180.30180 * 10 9 8 12 12 N 1.46501 * 109.47469 * 270.30588 * 11 10 9 13 13 C 1.34773 * 120.00321 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00247 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47135 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99887 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00287 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99792 * 179.97438 * 17 16 15 20 20 N 1.31636 * 120.00126 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.47111 * 120.00132 * 21 19 17 24 24 H 1.48497 * 109.47393 * 239.99914 * 21 19 17 25 25 C 1.38259 * 120.10889 * 0.60974 * 10 9 8 26 26 C 1.38146 * 120.05909 * 359.67363 * 25 10 9 27 27 H 1.09005 * 109.46783 * 59.99694 * 1 2 3 28 28 H 1.08993 * 109.47489 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47487 * 300.00181 * 1 2 3 30 30 H 1.09007 * 109.47125 * 59.99542 * 3 2 1 31 31 H 1.08998 * 109.47325 * 300.00498 * 3 2 1 32 32 H 1.08994 * 109.47469 * 60.00165 * 4 3 2 33 33 H 1.09001 * 109.47551 * 299.99753 * 4 3 2 34 34 H 1.09002 * 109.47184 * 60.00229 * 5 4 3 35 35 H 1.09001 * 109.46987 * 299.99936 * 5 4 3 36 36 H 1.08002 * 120.02291 * 0.02562 * 8 7 6 37 37 H 1.08004 * 119.96766 * 179.69880 * 9 8 7 38 38 H 1.09000 * 109.47353 * 30.30435 * 11 10 9 39 39 H 1.09002 * 109.47057 * 150.30403 * 11 10 9 40 40 H 0.97002 * 120.00028 * 359.97438 * 12 11 10 41 41 H 1.09005 * 109.46687 * 299.99362 * 15 13 12 42 42 H 1.08993 * 109.47473 * 59.99467 * 15 13 12 43 43 H 0.97000 * 120.00120 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.97147 * 179.69573 * 25 10 9 45 45 H 1.07993 * 120.03340 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1578 2.5822 0.0013 6 8 5.5824 2.4694 0.0025 7 6 6.2930 3.6277 0.0027 8 6 7.6800 3.5920 0.0033 9 6 8.4000 4.7709 0.0098 10 6 7.7397 5.9858 0.0034 11 6 8.5278 7.2702 0.0037 12 7 8.7831 7.6864 1.3850 13 6 9.4755 8.8160 1.6315 14 8 9.8878 9.4879 0.7097 15 6 9.7386 9.2438 3.0523 16 16 10.6850 10.7866 3.0525 17 6 10.8448 11.0473 4.7878 18 1 10.4118 10.3423 5.4819 19 6 11.5272 12.1587 5.2627 20 7 12.0555 13.0178 4.4167 21 14 11.6960 12.4355 7.1023 22 1 11.0194 11.3337 7.8328 23 1 13.1348 12.4616 7.4690 24 1 11.0685 13.7308 7.4677 25 6 6.3577 6.0240 0.0033 26 6 5.6329 4.8480 0.0027 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8890 33 1 3.8568 0.6438 0.8909 34 1 3.8359 3.1229 0.8913 35 1 3.8366 3.1234 -0.8887 36 1 8.1961 2.6433 0.0032 37 1 9.4797 4.7436 0.0152 38 1 9.4765 7.1146 -0.5100 39 1 7.9593 8.0454 -0.5102 40 1 8.4530 7.1493 2.1222 41 1 8.7900 9.3989 3.5665 42 1 10.3076 8.4688 3.5657 43 1 12.5320 13.7947 4.7485 44 1 5.8442 6.9742 0.0033 45 1 4.5534 4.8783 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285761207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -129.474960 kcal Electronic energy + Delta-G solvation = -24650.440555 eV Core-core repulsion = 20758.376434 eV Total energy + Delta-G solvation = -3892.064121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29853 -40.53631 -39.13090 -38.60880 -35.74550 -34.57532 -34.06209 -32.15355 -32.00872 -30.32199 -28.21613 -27.68480 -26.59706 -25.81147 -23.95630 -22.54399 -22.04925 -21.77509 -19.86708 -19.25337 -17.94283 -17.61228 -17.58466 -17.36079 -16.90961 -16.87323 -16.53781 -16.36270 -16.00991 -15.91272 -15.73594 -15.16620 -14.74194 -14.64666 -14.52345 -14.44294 -14.39157 -13.93151 -13.40540 -13.20544 -13.14992 -12.90317 -12.84604 -12.75574 -12.65309 -12.50785 -12.40873 -12.11128 -11.71875 -11.70797 -11.66215 -11.15005 -10.99492 -10.66673 -10.26204 -10.13009 -9.98494 -9.18655 -8.65380 -8.34023 -6.11784 0.26561 0.36571 1.29146 1.41948 1.48759 1.59857 1.62877 1.97336 2.26977 2.32102 2.84753 2.97717 3.00329 3.34577 3.70460 3.77398 3.83583 3.92254 4.00496 4.03102 4.10114 4.25857 4.31595 4.31820 4.35027 4.39350 4.45511 4.51816 4.52879 4.53767 4.62005 4.72542 4.78405 4.85851 4.99592 5.05738 5.06822 5.23770 5.33145 5.40649 5.43235 5.61806 5.75259 6.17399 6.21015 6.40208 6.51635 7.07604 7.24681 8.75510 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.001456 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.932040 B =19230.641129 C =20105.570270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.064 3.936 4 C -0.115 4.115 5 C 0.060 3.940 6 O -0.328 6.328 7 C 0.128 3.872 8 C -0.163 4.163 9 C -0.061 4.061 10 C -0.147 4.147 11 C 0.169 3.831 12 N -0.709 5.709 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.130 4.130 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.061 4.061 26 C -0.210 4.210 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.414 0.586 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.139 0.861 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.104 -27.023 -8.789 36.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.153 4.153 5 C -0.015 4.015 6 O -0.242 6.242 7 C 0.082 3.918 8 C -0.181 4.181 9 C -0.079 4.079 10 C -0.147 4.147 11 C 0.046 3.954 12 N -0.363 5.363 13 C 0.320 3.680 14 O -0.443 6.443 15 C -0.281 4.281 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.080 4.080 26 C -0.228 4.228 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.156 0.844 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.178 -26.147 -10.366 35.819 hybrid contribution -0.554 -0.186 2.121 2.200 sum -22.733 -26.333 -8.246 35.752 Atomic orbital electron populations 1.22934 0.79165 1.03875 1.01070 1.87819 1.21695 1.28743 1.95682 1.22391 0.92255 0.84738 1.01891 1.21310 0.93760 0.95900 1.04329 1.22777 0.77314 0.98290 1.03126 1.86018 1.20606 1.29085 1.88503 1.19206 0.91793 0.85145 0.95619 1.20603 0.90994 0.99720 1.06797 1.21059 1.00682 0.90626 0.95543 1.19663 0.94073 0.93797 1.07212 1.20102 0.99196 0.93354 0.82772 1.45883 1.56326 1.24604 1.09463 1.20054 0.77221 0.80680 0.90021 1.90694 1.51935 1.54783 1.46936 1.23379 1.05211 1.02603 0.96928 1.85563 1.70217 1.25714 1.10817 1.23245 1.41518 1.13027 0.91622 0.89951 1.26109 0.93973 0.94413 1.04531 1.70190 1.34815 1.12875 1.36920 0.84914 0.78267 0.78587 0.76228 1.18067 1.19950 1.19904 1.21080 0.92952 0.98702 0.95219 1.21438 1.01435 0.91326 1.08634 0.92932 0.88748 0.92993 0.91679 0.91575 0.90675 0.90767 0.90350 0.90251 0.84224 0.84128 0.91280 0.91216 0.74945 0.87233 0.87279 0.91990 0.84351 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.42 -5.41 10.70 -148.98 -1.59 -7.00 16 3 C 0.06 0.52 5.94 71.98 0.43 0.95 16 4 C -0.12 -1.14 5.95 30.59 0.18 -0.96 16 5 C 0.06 0.56 4.74 71.98 0.34 0.90 16 6 O -0.33 -5.20 10.14 -92.34 -0.94 -6.13 16 7 C 0.13 2.09 6.69 22.51 0.15 2.24 16 8 C -0.16 -2.68 9.99 22.37 0.22 -2.46 16 9 C -0.06 -1.01 9.69 22.25 0.22 -0.79 16 10 C -0.15 -2.60 5.25 -19.85 -0.10 -2.70 16 11 C 0.17 3.79 5.79 85.63 0.50 4.29 16 12 N -0.71 -17.97 5.55 -466.79 -2.59 -20.56 16 13 C 0.53 19.62 7.85 87.66 0.69 20.30 16 14 O -0.57 -26.06 15.86 -3.04 -0.05 -26.11 16 15 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 17 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 18 H 0.08 4.38 7.80 -2.92 -0.02 4.36 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C -0.06 -0.95 9.69 22.25 0.22 -0.73 16 26 C -0.21 -2.94 9.04 22.37 0.20 -2.74 16 27 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.55 7.66 -2.39 -0.02 0.53 16 35 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 39 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.41 8.14 8.46 -92.71 -0.78 7.35 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.15 1.35 6.30 -2.91 -0.02 1.34 16 Total: -1.00 -78.48 399.53 2.02 -76.45 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.20 Total: 17.27 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.84 Total: -14.28 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.30 Total: -76.31 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -2.58 Total: -39.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -78.48 2.02 -76.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285761207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.023 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds