Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00073 * 2 1 4 4 C 1.52997 * 109.47165 * 179.97438 * 3 2 1 5 5 S 1.81407 * 109.47306 * 180.02562 * 4 3 2 6 6 O 1.42102 * 109.46915 * 63.61055 * 5 4 3 7 7 C 1.81394 * 103.00049 * 180.02562 * 5 4 3 8 8 C 1.50702 * 109.46977 * 179.97438 * 7 5 4 9 9 C 1.38303 * 119.96525 * 269.97597 * 8 7 5 10 10 C 1.38262 * 120.14327 * 180.02562 * 9 8 7 11 11 C 1.38136 * 120.07025 * 359.67748 * 10 9 8 12 12 C 1.38856 * 119.92641 * 0.59942 * 11 10 9 13 13 N 1.39917 * 120.07116 * 179.69994 * 12 11 10 14 14 C 1.34779 * 120.00199 * 326.54865 * 13 12 11 15 15 O 1.21292 * 119.99752 * 354.72752 * 14 13 12 16 16 C 1.50697 * 120.00499 * 174.73002 * 14 13 12 17 17 C 1.53003 * 109.47280 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46942 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99917 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99728 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00107 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00082 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46845 * 90.00172 * 22 20 18 24 24 H 1.48496 * 109.47275 * 209.99828 * 22 20 18 25 25 H 1.48502 * 109.47188 * 330.00158 * 22 20 18 26 26 C 1.38090 * 119.96719 * 89.99932 * 8 7 5 27 27 H 1.08994 * 109.47268 * 299.99792 * 1 2 3 28 28 H 1.08995 * 109.46969 * 60.00148 * 1 2 3 29 29 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46970 * 59.99974 * 3 2 1 31 31 H 1.08994 * 109.47257 * 299.99936 * 3 2 1 32 32 H 1.08997 * 109.47120 * 60.00161 * 4 3 2 33 33 H 1.09004 * 109.47261 * 300.00244 * 4 3 2 34 34 H 1.09000 * 109.47451 * 60.00063 * 7 5 4 35 35 H 1.09005 * 109.47113 * 299.99621 * 7 5 4 36 36 H 1.08003 * 119.92801 * 0.02647 * 9 8 7 37 37 H 1.07992 * 119.96523 * 179.97438 * 10 9 8 38 38 H 1.07988 * 120.04058 * 180.31809 * 11 10 9 39 39 H 0.97006 * 120.00500 * 146.55272 * 13 12 11 40 40 H 1.09001 * 109.47394 * 59.99674 * 16 14 13 41 41 H 1.09005 * 109.47037 * 299.99959 * 16 14 13 42 42 H 1.08999 * 109.46583 * 299.99484 * 17 16 14 43 43 H 1.08996 * 109.47091 * 59.99776 * 17 16 14 44 44 H 0.97000 * 120.00712 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.03174 * 359.95501 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 16 4.2734 2.8418 0.0014 6 8 3.9215 3.5164 1.2016 7 6 6.0539 2.4956 0.0013 8 6 6.8182 3.7945 0.0013 9 6 7.1688 4.3896 -1.1969 10 6 7.8704 5.5810 -1.2012 11 6 8.2176 6.1842 -0.0080 12 6 7.8721 5.5863 1.1967 13 7 8.2277 6.1914 2.4071 14 6 9.3782 6.8872 2.5003 15 8 10.1508 6.9094 1.5656 16 6 9.7047 7.6376 3.7657 17 6 11.0563 8.3373 3.6095 18 6 11.3824 9.0882 4.8747 19 1 10.6946 9.0680 5.7072 20 6 12.5593 9.8002 4.9699 21 7 12.8442 10.4551 6.0742 22 14 13.7499 9.8333 3.5308 23 1 13.4202 10.9764 2.6420 24 1 15.1368 9.9855 4.0392 25 1 13.6389 8.5645 2.7673 26 6 7.1680 4.3890 1.1976 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8574 0.6435 -0.8891 33 1 3.8567 0.6438 0.8909 34 1 6.3126 1.9223 -0.8889 35 1 6.3125 1.9215 0.8911 36 1 6.8940 3.9227 -2.1312 37 1 8.1432 6.0430 -2.1384 38 1 8.7611 7.1173 -0.0119 39 1 7.6462 6.1100 3.1794 40 1 9.7513 6.9387 4.6009 41 1 8.9309 8.3812 3.9571 42 1 11.8301 7.5940 3.4180 43 1 11.0092 9.0363 2.7744 44 1 13.6720 10.9562 6.1411 45 1 6.8936 3.9239 2.1329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291610021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -100.375133 kcal Electronic energy + Delta-G solvation = -25445.849312 eV Core-core repulsion = 21555.047054 eV Total energy + Delta-G solvation = -3890.802258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.40678 -38.60594 -38.39445 -36.13389 -34.87088 -33.57370 -32.70231 -32.10981 -31.41618 -29.80414 -27.47325 -26.91709 -26.17583 -23.66871 -22.76221 -22.36056 -20.71348 -19.66748 -18.06245 -17.59470 -17.21004 -17.05241 -16.72462 -16.25020 -16.14295 -15.76088 -15.53868 -15.36919 -14.96695 -14.67897 -14.42062 -14.12498 -14.09653 -13.50931 -13.42680 -13.25545 -12.95001 -12.62090 -12.57270 -12.52262 -12.31820 -11.99295 -11.86610 -11.76345 -11.46500 -11.41918 -11.01085 -10.75957 -10.25527 -10.23736 -10.22875 -10.09292 -9.82164 -9.38215 -9.22456 -9.08714 -8.54121 -8.52618 -8.06441 -6.05531 -4.04906 0.67842 1.23609 1.46909 2.12930 2.91513 3.17487 3.23305 3.35704 3.42556 3.49763 3.52709 3.77282 4.29852 4.34782 4.39526 4.48251 4.53997 4.77251 4.82382 4.84587 4.86946 5.04926 5.14290 5.15827 5.16104 5.25678 5.29679 5.30523 5.33030 5.48187 5.62276 5.86221 5.97976 6.00101 6.24704 6.31600 6.42331 6.51153 6.57803 6.61341 7.00141 7.29722 7.37152 7.55076 7.74514 8.38896 8.50434 8.96892 9.56972 11.07200 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028826 B = 0.001742 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.125807 B =16068.904879 C =16787.929528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.390 6.390 3 C 0.082 3.918 4 C -0.461 4.461 5 S 1.259 4.741 6 O -0.831 6.831 7 C -0.400 4.400 8 C -0.057 4.057 9 C -0.138 4.138 10 C -0.096 4.096 11 C -0.121 4.121 12 C 0.164 3.836 13 N -0.686 5.686 14 C 0.510 3.490 15 O -0.519 6.519 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.527 4.527 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.902 5.902 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.261 1.261 26 C -0.142 4.142 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.411 0.589 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.264 0.736 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.319 -20.451 -19.563 37.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.309 6.309 3 C 0.005 3.995 4 C -0.596 4.596 5 S 1.457 4.543 6 O -0.826 6.826 7 C -0.536 4.536 8 C -0.059 4.059 9 C -0.158 4.158 10 C -0.115 4.115 11 C -0.142 4.142 12 C 0.069 3.931 13 N -0.331 5.331 14 C 0.300 3.700 15 O -0.393 6.393 16 C -0.162 4.162 17 C -0.036 4.036 18 C -0.565 4.565 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.541 5.541 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.164 4.164 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.247 0.753 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.955 -19.588 -20.050 36.872 hybrid contribution 0.874 -1.091 1.704 2.204 sum -23.082 -20.679 -18.345 36.013 Atomic orbital electron populations 1.22790 0.80715 1.03016 1.00293 1.87916 1.19934 1.27630 1.95469 1.21977 0.91035 0.85492 1.01045 1.27939 1.01935 1.21099 1.08648 1.71082 0.86030 0.85123 1.12087 1.93159 1.77723 1.60956 1.50756 1.26605 1.17634 1.00714 1.08612 1.18702 0.99480 0.94417 0.93309 1.20947 1.01072 0.96796 0.96951 1.21024 0.97333 0.95301 0.97810 1.21304 1.00825 1.01183 0.90920 1.17795 0.96776 0.91910 0.86605 1.43948 1.23803 1.53306 1.12059 1.21820 0.79130 0.77689 0.91319 1.90667 1.47703 1.60447 1.40435 1.21725 1.02619 0.99231 0.92591 1.19386 0.90752 0.95745 0.97748 1.21087 1.05747 1.30032 0.99614 0.90881 1.24964 0.97762 0.94695 0.95730 1.69907 1.25107 1.32502 1.26566 0.86796 0.80215 0.79480 0.83066 1.20195 1.21387 1.18567 1.20771 1.02781 0.94578 0.98242 0.93910 0.93686 0.89432 0.92788 0.91959 0.85647 0.88861 0.85203 0.88479 0.85326 0.85363 0.84448 0.75318 0.89238 0.89061 0.95733 0.96146 0.92666 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.14 10.70 -35.23 -0.38 -3.52 16 3 C 0.08 0.53 5.95 37.16 0.22 0.75 16 4 C -0.46 -2.49 6.29 37.16 0.23 -2.25 16 5 S 1.26 7.38 13.14 -107.50 -1.41 5.97 16 6 O -0.83 -10.41 18.14 -35.23 -0.64 -11.05 16 7 C -0.40 -2.55 6.05 36.01 0.22 -2.33 16 8 C -0.06 -0.56 5.14 -104.65 -0.54 -1.10 16 9 C -0.14 -1.20 9.70 -39.55 -0.38 -1.59 16 10 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 11 C -0.12 -1.74 8.66 -39.39 -0.34 -2.08 16 12 C 0.16 2.37 6.28 -83.70 -0.53 1.84 16 13 N -0.69 -10.01 5.34 -9.86 -0.05 -10.06 16 14 C 0.51 9.30 7.57 -10.99 -0.08 9.22 16 15 O -0.52 -11.18 13.68 5.55 0.08 -11.10 16 16 C -0.12 -2.34 5.64 -27.88 -0.16 -2.49 16 17 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 18 C -0.53 -15.03 9.66 -34.44 -0.33 -15.37 16 19 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 22 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 26 C -0.14 -1.78 9.62 -39.39 -0.38 -2.16 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.13 0.39 8.08 -51.92 -0.42 -0.03 16 35 H 0.10 0.70 8.09 -51.92 -0.42 0.28 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 2.21 6.43 -52.49 -0.34 1.88 16 39 H 0.41 4.78 8.82 -40.82 -0.36 4.42 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 43 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 45 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -40.21 393.41 -8.87 -49.08 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.96 Total: -0.10 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.54 Total: -15.82 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.72 Total: -37.23 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.94 Total: -25.67 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -1.41 Total: 5.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.21 -8.87 -49.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291610021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.292 kcal (2) G-P(sol) polarization free energy of solvation -40.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds