Wall clock time and date at job start Sat Apr 11 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00129 * 2 1 4 4 H 1.08998 * 109.46555 * 30.00043 * 3 2 1 5 5 C 1.52993 * 109.47168 * 150.00204 * 3 2 1 6 6 N 1.46505 * 109.47223 * 300.00289 * 5 3 2 7 7 S 1.65596 * 120.00115 * 164.99808 * 6 5 3 8 8 O 1.42101 * 104.28094 * 181.07235 * 7 6 5 9 9 O 1.42104 * 104.28109 * 308.93056 * 7 6 5 10 10 C 1.81401 * 104.44924 * 64.99958 * 7 6 5 11 11 C 1.53003 * 109.47194 * 173.81076 * 10 7 6 12 12 C 1.50704 * 115.54628 * 65.19862 * 11 10 7 13 13 H 1.08000 * 119.99873 * 264.78211 * 12 11 10 14 14 C 1.37877 * 119.99887 * 84.78516 * 12 11 10 15 15 N 1.31513 * 120.00130 * 352.21994 * 14 12 11 16 16 Si 1.86803 * 119.99748 * 172.22498 * 14 12 11 17 17 H 1.48501 * 109.47066 * 59.99751 * 16 14 12 18 18 H 1.48503 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46818 * 299.99728 * 16 14 12 20 20 C 1.52998 * 117.50184 * 279.52712 * 11 10 7 21 21 C 1.52997 * 117.49718 * 210.86429 * 11 10 7 22 22 C 1.50701 * 109.47134 * 270.00590 * 3 2 1 23 23 C 1.38234 * 119.99768 * 324.72297 * 22 3 2 24 24 C 1.38235 * 119.99615 * 179.79290 * 23 22 3 25 25 C 1.38234 * 120.00163 * 0.44042 * 24 23 22 26 26 C 1.38243 * 119.99916 * 359.81222 * 25 24 23 27 27 C 1.38227 * 119.99947 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46744 * 299.99937 * 1 2 3 30 30 H 1.09003 * 109.47458 * 59.99509 * 1 2 3 31 31 H 1.09001 * 109.47006 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.47325 * 60.00064 * 5 3 2 33 33 H 0.96996 * 120.00109 * 345.00253 * 6 5 3 34 34 H 1.09001 * 109.47347 * 293.81422 * 10 7 6 35 35 H 1.08999 * 109.47165 * 53.81390 * 10 7 6 36 36 H 0.97002 * 119.99763 * 185.02532 * 15 14 12 37 37 H 1.09004 * 117.49858 * 359.97438 * 20 11 10 38 38 H 1.08997 * 117.49803 * 145.02109 * 20 11 10 39 39 H 1.09001 * 117.49623 * 214.98202 * 21 11 10 40 40 H 1.08995 * 117.50170 * 359.97438 * 21 11 10 41 41 H 1.07995 * 120.00532 * 0.02562 * 23 22 3 42 42 H 1.08000 * 120.00144 * 180.27309 * 24 23 22 43 43 H 1.08004 * 120.00361 * 179.83922 * 25 24 23 44 44 H 1.08003 * 119.99685 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.00249 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2633 0.7212 6 7 3.1604 0.8171 2.1024 7 16 4.4560 0.3211 3.0067 8 8 3.8893 -0.0542 4.2546 9 8 5.1130 -0.6332 2.1839 10 6 5.4750 1.8103 3.1924 11 6 6.6356 1.5185 4.1456 12 6 7.6370 0.5030 3.6587 13 1 7.5432 -0.5319 3.9530 14 6 8.6728 0.8950 2.8375 15 7 8.7027 2.1181 2.3551 16 14 10.0336 -0.3112 2.4101 17 1 9.4518 -1.4884 1.7166 18 1 11.0196 0.3506 1.5184 19 1 10.7109 -0.7547 3.6550 20 6 6.3442 1.5596 5.6470 21 6 7.1610 2.6779 4.9946 22 6 2.2145 1.7645 -1.4208 23 6 2.5649 0.8520 -2.3983 24 6 2.7480 1.2723 -3.7024 25 6 2.5896 2.6065 -4.0273 26 6 2.2443 3.5199 -3.0487 27 6 2.0569 3.0989 -1.7455 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.8021 2.2591 0.7216 32 1 4.0242 0.5693 0.2073 33 1 2.2700 0.8121 2.4872 34 1 5.8689 2.1047 2.2196 35 1 4.8665 2.6187 3.5977 36 1 9.3905 2.3723 1.7201 37 1 5.3256 1.7950 5.9558 38 1 6.8770 0.8524 6.2827 39 1 8.2309 2.7058 5.2013 40 1 6.6801 3.6485 4.8738 41 1 2.6920 -0.1899 -2.1439 42 1 3.0175 0.5587 -4.4670 43 1 2.7352 2.9354 -5.0457 44 1 2.1201 4.5623 -3.3027 45 1 1.7875 3.8125 -0.9809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346453051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:31 Heat of formation + Delta-G solvation = -68.071854 kcal Electronic energy + Delta-G solvation = -27787.583633 eV Core-core repulsion = 23898.182150 eV Total energy + Delta-G solvation = -3889.401483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.86445 -37.83951 -36.73270 -36.19113 -35.07964 -34.76598 -32.02107 -31.97567 -31.01384 -28.18076 -28.10669 -26.25904 -25.42755 -23.45552 -22.67268 -21.19937 -21.10256 -19.68372 -18.64473 -17.34408 -17.08395 -16.65064 -16.44640 -16.06434 -15.56680 -15.08653 -14.87342 -14.69732 -14.62416 -14.45848 -14.03268 -13.75751 -13.50801 -13.41450 -13.10555 -13.00981 -12.86426 -11.95141 -11.89983 -11.80979 -11.52349 -11.48441 -11.23754 -11.19423 -11.06363 -10.98314 -10.91152 -10.88130 -10.56742 -10.43625 -10.09212 -9.87528 -9.70693 -9.18748 -9.04162 -8.94323 -8.91797 -8.53865 -8.06787 -6.11696 -4.22037 1.06215 1.21116 1.28293 3.34982 3.36646 3.43840 3.45003 3.56852 3.65322 4.39946 4.52154 4.60862 4.70619 4.85545 4.88551 4.95610 5.01384 5.08505 5.17127 5.21004 5.22821 5.24951 5.36531 5.45736 5.50510 5.57139 5.62134 5.79446 5.83580 5.91287 5.99971 6.13287 6.28061 6.30758 6.37939 6.38793 6.40525 6.62829 6.73738 6.85171 6.99857 7.03531 7.24640 7.32786 7.40631 7.82896 8.22729 8.83213 9.49086 10.96013 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.003669 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.027816 B = 7629.466751 C = 8687.854147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.127 3.873 4 H 0.076 0.924 5 C 0.125 3.875 6 N -1.128 6.128 7 S 2.608 3.392 8 O -0.975 6.975 9 O -0.947 6.947 10 C -0.556 4.556 11 C 0.044 3.956 12 C -0.516 4.516 13 H 0.068 0.932 14 C 0.083 3.917 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.208 4.208 21 C -0.142 4.142 22 C -0.115 4.115 23 C -0.090 4.090 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.109 4.109 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 4.185 -9.834 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C 0.067 3.933 4 H 0.094 0.906 5 C -0.002 4.002 6 N -0.884 5.884 7 S 2.705 3.295 8 O -0.965 6.965 9 O -0.937 6.937 10 C -0.689 4.689 11 C 0.042 3.958 12 C -0.553 4.553 13 H 0.086 0.914 14 C -0.122 4.122 15 N -0.511 5.511 16 Si 0.717 3.283 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.246 4.246 21 C -0.181 4.181 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.127 4.127 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.764 3.254 -9.692 18.789 hybrid contribution 0.263 0.566 -0.453 0.771 sum -15.501 3.820 -10.145 18.915 Atomic orbital electron populations 1.22824 0.81210 1.02884 0.99877 1.88028 1.19451 1.26380 1.94691 1.21164 0.95194 0.85492 0.91435 0.90596 1.21350 0.96131 1.00950 0.81773 1.55845 1.24487 1.85626 1.22444 1.05120 0.73512 0.77611 0.73236 1.93500 1.76971 1.82315 1.43729 1.93540 1.74892 1.57392 1.67874 1.30000 1.10790 1.17363 1.10704 1.18267 0.93112 0.98934 0.85528 1.20492 1.09234 0.93707 1.31912 0.91383 1.24939 0.97444 0.95002 0.94822 1.69966 1.34405 1.17789 1.28916 0.86662 0.81414 0.81640 0.78603 1.19419 1.21132 1.19883 1.23197 0.99591 1.03686 0.98076 1.22551 0.98850 0.91851 1.04825 1.20298 1.01484 0.94036 0.95808 1.21092 0.97013 1.00280 0.92384 1.21202 1.00310 0.96030 0.96566 1.21197 0.99483 0.93546 0.99368 1.21102 1.00390 0.99579 0.93102 1.21024 1.00049 0.94948 0.96716 0.89498 0.93920 0.94134 0.90290 0.89084 0.75928 0.84891 0.88291 0.92694 0.90691 0.89529 0.89603 0.91560 0.85140 0.85964 0.86188 0.86032 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.37 -4.58 9.37 -35.23 -0.33 -4.91 16 3 C 0.13 1.45 2.40 -27.89 -0.07 1.39 16 4 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 5 C 0.12 1.74 5.81 -4.04 -0.02 1.72 16 6 N -1.13 -17.23 5.75 -10.61 -0.06 -17.29 16 7 S 2.61 53.57 5.19 -107.50 -0.56 53.01 16 8 O -0.97 -21.72 18.08 -57.54 -1.04 -22.76 16 9 O -0.95 -23.18 17.17 -57.54 -0.99 -24.17 16 10 C -0.56 -11.65 5.93 37.16 0.22 -11.43 16 11 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 12 C -0.52 -14.23 8.18 -34.44 -0.28 -14.51 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C 0.08 2.27 5.38 -17.82 -0.10 2.18 16 15 N -0.88 -24.12 12.98 55.43 0.72 -23.40 16 16 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.21 -4.60 9.96 -26.69 -0.27 -4.87 16 21 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 22 C -0.12 -1.29 4.96 -104.62 -0.52 -1.81 16 23 C -0.09 -1.04 9.35 -39.58 -0.37 -1.41 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.11 -1.08 9.68 -39.58 -0.38 -1.46 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.45 7.69 -51.93 -0.40 1.05 16 33 H 0.41 5.27 8.62 -34.46 -0.30 4.98 16 34 H 0.13 2.88 8.14 -51.92 -0.42 2.46 16 35 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 36 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.13 1.55 7.64 -52.49 -0.40 1.15 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -34.05 394.15 -10.64 -44.69 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.96 Total: 8.55 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: -2.35 Total: -36.17 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.66 Total: -40.69 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -2.36 Total: -51.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.56 Total: 53.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.05 -10.64 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346453051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.379 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds