Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00174 * 2 1 4 4 O 1.20825 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00020 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46746 * 305.00321 * 5 3 2 7 7 C 1.53002 * 109.46568 * 65.00229 * 5 3 2 8 8 N 1.46511 * 109.46554 * 184.99909 * 7 5 3 9 9 C 1.34780 * 119.99424 * 179.72194 * 8 7 5 10 10 O 1.21278 * 120.00144 * 0.28345 * 9 8 7 11 11 C 1.50703 * 119.99368 * 180.27299 * 9 8 7 12 12 C 1.52995 * 109.46736 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47062 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00266 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00363 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46976 * 90.00256 * 17 15 13 19 19 H 1.48500 * 109.47280 * 209.99954 * 17 15 13 20 20 H 1.48498 * 109.47199 * 330.00517 * 17 15 13 21 21 O 1.42899 * 109.47125 * 185.00085 * 5 3 2 22 22 C 1.35944 * 116.99689 * 84.67641 * 21 5 3 23 23 C 1.38714 * 120.02990 * 174.24586 * 22 21 5 24 24 C 1.38147 * 119.96924 * 179.75380 * 23 22 21 25 25 C 1.38451 * 120.02897 * 0.52548 * 24 23 22 26 26 F 1.35105 * 119.96782 * 179.72601 * 25 24 23 27 27 C 1.38451 * 120.06433 * 359.74986 * 25 24 23 28 28 C 1.38150 * 120.02864 * 359.97438 * 27 25 24 29 29 H 1.08994 * 109.46652 * 300.00033 * 1 2 3 30 30 H 1.08999 * 109.46674 * 59.99563 * 1 2 3 31 31 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47294 * 65.00263 * 7 5 3 33 33 H 1.09001 * 109.47286 * 304.99485 * 7 5 3 34 34 H 0.96992 * 119.99807 * 0.02562 * 8 7 5 35 35 H 1.08995 * 109.47570 * 300.00716 * 11 9 8 36 36 H 1.09001 * 109.46692 * 60.00741 * 11 9 8 37 37 H 1.09003 * 109.47235 * 300.00305 * 12 11 9 38 38 H 1.09000 * 109.47519 * 60.00046 * 12 11 9 39 39 H 0.97000 * 120.00267 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.01111 * 0.02562 * 23 22 21 41 41 H 1.08001 * 119.98098 * 180.25873 * 24 23 22 42 42 H 1.07996 * 119.98629 * 179.97438 * 27 25 24 43 43 H 1.08004 * 120.01642 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9597 0.7052 0.8427 7 6 4.1080 0.6924 -1.3065 8 7 5.5719 0.6591 -1.2566 9 6 6.2710 0.1767 -2.3032 10 8 5.6884 -0.2249 -3.2881 11 6 7.7765 0.1368 -2.2494 12 6 8.3179 -0.4501 -3.5544 13 6 9.8234 -0.4907 -3.5005 14 1 10.3422 -0.1332 -2.6232 15 6 10.5387 -0.9832 -4.5714 16 7 11.8525 -1.0191 -4.5241 17 14 9.6415 -1.6010 -6.0890 18 1 9.4578 -0.4803 -7.0458 19 1 10.4392 -2.6755 -6.7325 20 1 8.3143 -2.1381 -5.6950 21 8 3.9719 2.6400 0.1179 22 6 4.0442 3.1566 1.3733 23 6 4.5442 4.4354 1.5700 24 6 4.6125 4.9610 2.8458 25 6 4.1922 4.2079 3.9288 26 9 4.2646 4.7211 5.1765 27 6 3.6982 2.9292 3.7346 28 6 3.6235 2.4032 2.4593 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.7870 1.3145 -2.1420 33 1 3.7259 -0.3198 -1.4392 34 1 6.0377 0.9801 -0.4688 35 1 8.1624 1.1477 -2.1183 36 1 8.0937 -0.4846 -1.4119 37 1 7.9321 -1.4611 -3.6858 38 1 8.0007 0.1715 -4.3917 39 1 12.3556 -1.3660 -5.2774 40 1 4.8760 5.0215 0.7257 41 1 4.9978 5.9583 2.9987 42 1 3.3711 2.3427 4.5803 43 1 3.2378 1.4058 2.3080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360406807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = -176.480047 kcal Electronic energy + Delta-G solvation = -28601.502422 eV Core-core repulsion = 24141.186831 eV Total energy + Delta-G solvation = -4460.315591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -49.19090 -41.63606 -40.19015 -39.35281 -37.93760 -36.81707 -34.97451 -33.50439 -31.97720 -31.53219 -30.91752 -29.58841 -28.03994 -26.39395 -24.56969 -23.43289 -23.03010 -21.35881 -21.28196 -19.86932 -19.13929 -18.43217 -17.96285 -17.56162 -17.31733 -16.82894 -16.74073 -15.95144 -15.87529 -15.72939 -15.52668 -15.14972 -14.92422 -14.53723 -14.14998 -14.09119 -13.91610 -13.70130 -13.58449 -13.25274 -13.22440 -13.03671 -12.59540 -12.56020 -12.38428 -12.08647 -11.97093 -11.44168 -11.31856 -11.30399 -10.97412 -10.92581 -10.19442 -10.07185 -9.80386 -9.67440 -9.34604 -9.19237 -9.09216 -8.61196 -8.51511 -6.03706 -4.02667 0.66272 0.73357 1.49575 1.83946 2.48710 3.02308 3.10556 3.26484 3.37529 3.44257 3.54479 3.84500 3.97466 4.04805 4.15898 4.22279 4.28882 4.50171 4.62712 4.64879 4.73839 4.78504 4.97501 5.07738 5.19936 5.25147 5.31767 5.38271 5.53255 5.61682 5.69224 5.69613 5.75643 6.03896 6.06555 6.16263 6.35525 6.65585 6.67283 7.12848 7.34331 7.41360 7.59548 7.77596 8.46059 8.55559 8.99232 9.59196 11.09075 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002494 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.710715 B =11223.167755 C =13189.961165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.441 3.559 4 O -0.478 6.478 5 C 0.086 3.914 6 H 0.122 0.878 7 C 0.133 3.867 8 N -0.739 5.739 9 C 0.514 3.486 10 O -0.536 6.536 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.903 5.903 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.261 1.261 21 O -0.271 6.271 22 C 0.119 3.881 23 C -0.112 4.112 24 C -0.111 4.111 25 C 0.063 3.937 26 F -0.140 7.140 27 C -0.110 4.110 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.402 0.598 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.677 7.208 18.295 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.280 3.720 4 O -0.363 6.363 5 C 0.027 3.973 6 H 0.139 0.861 7 C 0.009 3.991 8 N -0.395 5.395 9 C 0.303 3.697 10 O -0.412 6.412 11 C -0.161 4.161 12 C -0.037 4.037 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.185 1.185 21 O -0.184 6.184 22 C 0.074 3.926 23 C -0.130 4.130 24 C -0.129 4.129 25 C 0.043 3.957 26 F -0.119 7.119 27 C -0.128 4.128 28 C -0.200 4.200 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.143 7.271 17.310 29.801 hybrid contribution -0.540 -0.118 0.007 0.553 sum -23.683 7.153 17.317 30.198 Atomic orbital electron populations 1.23375 0.75356 1.04270 1.02871 1.86516 1.24159 1.32385 1.83763 1.23958 0.91928 0.82327 0.73762 1.90742 1.66290 1.36161 1.43110 1.22232 0.88033 0.83773 1.03257 0.86105 1.21227 0.82808 1.01762 0.93336 1.46046 1.05098 1.67376 1.20949 1.21593 0.91434 0.75291 0.81370 1.90672 1.72044 1.46466 1.31970 1.21679 0.87402 1.03526 1.03473 1.19379 0.96330 0.96539 0.91438 1.21103 0.89248 1.42323 1.03645 0.90906 1.24975 0.94686 0.95088 0.98497 1.69910 1.05662 1.46855 1.31790 0.86797 0.80505 0.78979 0.83272 1.20244 1.21466 1.18514 1.86352 1.81154 1.25636 1.25262 1.19048 0.96411 0.93794 0.83329 1.20320 1.01793 0.93345 0.97562 1.21012 1.00304 1.00765 0.90846 1.17587 1.04647 0.93572 0.79854 1.91506 1.94519 1.87044 1.38820 1.20896 0.99858 0.94281 0.97813 1.21031 1.05731 1.01018 0.92172 0.91672 0.91451 0.87494 0.89669 0.87975 0.76317 0.89385 0.89396 0.95774 0.96225 0.92703 0.83578 0.83687 0.84270 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.93 10.53 -39.25 -0.41 -3.35 16 3 C 0.44 4.30 6.34 36.01 0.23 4.52 16 4 O -0.48 -5.98 16.13 -25.46 -0.41 -6.39 16 5 C 0.09 0.74 2.18 -27.88 -0.06 0.68 16 6 H 0.12 0.73 6.33 -51.93 -0.33 0.40 16 7 C 0.13 1.40 5.32 -4.03 -0.02 1.38 16 8 N -0.74 -8.82 5.50 -60.28 -0.33 -9.15 16 9 C 0.51 8.72 7.83 -10.98 -0.09 8.63 16 10 O -0.54 -11.23 15.98 5.56 0.09 -11.14 16 11 C -0.12 -2.22 5.64 -27.88 -0.16 -2.38 16 12 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 13 C -0.53 -14.78 9.66 -34.44 -0.33 -15.12 16 14 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 17 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 21 O -0.27 -2.74 9.33 -39.47 -0.37 -3.10 16 22 C 0.12 1.11 6.46 -39.23 -0.25 0.85 16 23 C -0.11 -0.94 9.99 -39.44 -0.39 -1.34 16 24 C -0.11 -0.87 10.02 -39.54 -0.40 -1.26 16 25 C 0.06 0.54 7.30 -39.42 -0.29 0.26 16 26 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 27 C -0.11 -0.86 10.02 -39.54 -0.40 -1.25 16 28 C -0.18 -1.46 8.70 -39.44 -0.34 -1.80 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.85 5.68 -52.48 -0.30 0.55 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -36.28 378.32 -6.76 -43.04 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.55 Total: -1.28 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.62 Total: -3.69 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.44 Total: -36.16 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.10 Total: -23.98 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.28 -6.76 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360406807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.443 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds