Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99665 * 2 1 4 4 O 1.20825 * 119.99929 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99796 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47354 * 60.00391 * 5 3 2 7 7 C 1.53003 * 109.47199 * 300.00267 * 5 3 2 8 8 N 1.46495 * 109.47137 * 179.97438 * 7 5 3 9 9 C 1.34781 * 119.99854 * 179.97438 * 8 7 5 10 10 O 1.21273 * 120.00140 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99713 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.46917 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47089 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00142 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00135 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99864 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47097 * 89.99855 * 17 15 13 19 19 H 1.48499 * 109.46890 * 210.00041 * 17 15 13 20 20 H 1.48500 * 109.47205 * 329.99960 * 17 15 13 21 21 O 1.42900 * 109.46852 * 180.02562 * 5 3 2 22 22 C 1.35942 * 117.00056 * 275.19124 * 21 5 3 23 23 C 1.38706 * 120.02897 * 5.50207 * 22 21 5 24 24 C 1.38151 * 119.96999 * 179.97438 * 23 22 21 25 25 C 1.38452 * 120.03284 * 0.25785 * 24 23 22 26 26 F 1.35099 * 119.97530 * 179.72124 * 25 24 23 27 27 C 1.38461 * 120.05657 * 359.49118 * 25 24 23 28 28 C 1.38152 * 120.03131 * 0.50799 * 27 25 24 29 29 H 1.09001 * 109.47305 * 59.99815 * 1 2 3 30 30 H 1.08998 * 109.46795 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46971 * 299.99458 * 1 2 3 32 32 H 1.08996 * 109.47069 * 300.00299 * 7 5 3 33 33 H 1.08999 * 109.46930 * 59.99699 * 7 5 3 34 34 H 0.97006 * 120.00094 * 0.02562 * 8 7 5 35 35 H 1.09007 * 109.46797 * 299.99600 * 11 9 8 36 36 H 1.08998 * 109.47267 * 59.99859 * 11 9 8 37 37 H 1.09004 * 109.46978 * 299.99638 * 12 11 9 38 38 H 1.08999 * 109.47404 * 59.99133 * 12 11 9 39 39 H 0.97001 * 119.99918 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.01892 * 359.95948 * 23 22 21 41 41 H 1.08004 * 119.98561 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.98557 * 180.25290 * 27 25 24 43 43 H 1.07991 * 120.01870 * 179.72654 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 4.1139 0.5810 1.2483 8 7 5.5769 0.6572 1.2474 9 6 6.2808 0.1098 2.2580 10 8 5.7031 -0.4462 3.1679 11 6 7.7857 0.1887 2.2574 12 6 8.3333 -0.5053 3.5062 13 6 9.8382 -0.4270 3.5052 14 1 10.3527 0.0679 2.6948 15 6 10.5583 -0.9871 4.5390 16 7 11.8718 -0.9192 4.5380 17 14 9.6685 -1.8436 5.9405 18 1 9.4958 -3.2814 5.6118 19 1 10.4659 -1.7129 7.1864 20 1 8.3365 -1.2174 6.1373 21 8 3.9714 2.6453 0.0001 22 6 4.0407 3.2690 -1.2058 23 6 3.6169 2.6129 -2.3520 24 6 3.6875 3.2481 -3.5768 25 6 4.1858 4.5370 -3.6612 26 9 4.2595 5.1550 -4.8604 27 6 4.6043 5.1951 -2.5172 28 6 4.5349 4.5623 -1.2910 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.7245 1.0749 2.1385 33 1 3.8048 -0.4642 1.2481 34 1 6.0389 1.1023 0.5198 35 1 8.1751 -0.3057 1.3673 36 1 8.0948 1.2339 2.2571 37 1 7.9440 -0.0114 4.3965 38 1 8.0242 -1.5505 3.5061 39 1 12.3784 -1.3129 5.2655 40 1 3.2322 1.6058 -2.2871 41 1 3.3579 2.7373 -4.4695 42 1 4.9891 6.2020 -2.5838 43 1 4.8656 5.0741 -0.3995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360406810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = -176.337260 kcal Electronic energy + Delta-G solvation = -28621.031491 eV Core-core repulsion = 24160.722092 eV Total energy + Delta-G solvation = -4460.309399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -49.18505 -41.63685 -40.18598 -39.34495 -37.92999 -36.81686 -34.95701 -33.50076 -31.97489 -31.52748 -30.91776 -29.58415 -28.02508 -26.39329 -24.55696 -23.42986 -23.02471 -21.35193 -21.26902 -19.85977 -19.14915 -18.42140 -17.95489 -17.56674 -17.31091 -16.83790 -16.72697 -15.94341 -15.87248 -15.72235 -15.51918 -15.14540 -14.91754 -14.52496 -14.14439 -14.08283 -13.94059 -13.68669 -13.57721 -13.25809 -13.20643 -13.02782 -12.59209 -12.54890 -12.39397 -12.07124 -11.96971 -11.43866 -11.31618 -11.29777 -10.97242 -10.92269 -10.19121 -10.06820 -9.80087 -9.66396 -9.34082 -9.18974 -9.08037 -8.60270 -8.51310 -6.03537 -4.02456 0.67357 0.74243 1.49391 1.85734 2.48204 3.02969 3.11470 3.27234 3.37468 3.44308 3.54843 3.85146 3.97774 4.05235 4.15866 4.23125 4.29506 4.50358 4.63595 4.65057 4.74104 4.79412 4.98627 5.07980 5.21039 5.25359 5.31937 5.38988 5.54036 5.62535 5.69998 5.70465 5.75960 6.04450 6.07000 6.16877 6.36741 6.66035 6.68042 7.12634 7.34446 7.41853 7.60717 7.77877 8.46548 8.56094 8.99453 9.59385 11.09257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.002515 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.444775 B =11132.256939 C =13164.621103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.441 3.559 4 O -0.479 6.479 5 C 0.086 3.914 6 H 0.122 0.878 7 C 0.134 3.866 8 N -0.739 5.739 9 C 0.514 3.486 10 O -0.536 6.536 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.903 5.903 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.261 1.261 21 O -0.272 6.272 22 C 0.120 3.880 23 C -0.179 4.179 24 C -0.110 4.110 25 C 0.063 3.937 26 F -0.140 7.140 27 C -0.111 4.111 28 C -0.112 4.112 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 7.615 -17.951 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.281 3.719 4 O -0.364 6.364 5 C 0.027 3.973 6 H 0.140 0.860 7 C 0.009 3.991 8 N -0.394 5.394 9 C 0.303 3.697 10 O -0.412 6.412 11 C -0.161 4.161 12 C -0.037 4.037 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.185 1.185 21 O -0.184 6.184 22 C 0.075 3.925 23 C -0.198 4.198 24 C -0.129 4.129 25 C 0.043 3.957 26 F -0.119 7.119 27 C -0.129 4.129 28 C -0.130 4.130 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.237 0.763 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.212 7.554 -17.012 29.753 hybrid contribution -0.548 -0.187 -0.059 0.582 sum -23.760 7.367 -17.070 30.169 Atomic orbital electron populations 1.23373 0.75374 1.04267 1.02854 1.86519 1.24145 1.32362 1.83744 1.23963 0.91928 0.82333 0.73724 1.90744 1.66271 1.36163 1.43202 1.22242 0.88028 0.83245 1.03795 0.86046 1.21235 0.82749 1.00597 0.94507 1.46031 1.05126 1.61082 1.27194 1.21589 0.91389 0.76437 0.80287 1.90670 1.72306 1.42741 1.35467 1.21680 0.87424 1.03566 1.03414 1.19379 0.96297 0.95832 0.92173 1.21104 0.89266 1.37181 1.08756 0.90907 1.24977 0.94685 0.95597 0.97999 1.69914 1.05543 1.45767 1.33000 0.86794 0.80509 0.80433 0.81811 1.20249 1.21466 1.18510 1.86342 1.81155 1.23566 1.27381 1.19034 0.96416 0.93039 0.84014 1.21014 1.05603 1.01157 0.92014 1.20894 0.99865 0.93559 0.98570 1.17586 1.04623 0.92380 0.81071 1.91504 1.94514 1.82606 1.43274 1.21013 1.00337 1.00997 0.90593 1.20318 1.01863 0.92343 0.98499 0.91685 0.87500 0.91459 0.89848 0.87904 0.76276 0.89438 0.89362 0.95779 0.96226 0.92709 0.85145 0.84299 0.83692 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.93 10.47 -39.25 -0.41 -3.34 16 3 C 0.44 4.28 6.41 36.01 0.23 4.51 16 4 O -0.48 -5.94 16.04 -25.48 -0.41 -6.35 16 5 C 0.09 0.74 2.24 -27.88 -0.06 0.68 16 6 H 0.12 0.73 6.32 -51.93 -0.33 0.40 16 7 C 0.13 1.40 5.30 -4.04 -0.02 1.38 16 8 N -0.74 -8.86 5.45 -60.30 -0.33 -9.19 16 9 C 0.51 8.73 7.83 -10.98 -0.09 8.65 16 10 O -0.54 -11.24 15.98 5.56 0.09 -11.15 16 11 C -0.12 -2.23 5.64 -27.88 -0.16 -2.39 16 12 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 13 C -0.53 -14.79 9.66 -34.44 -0.33 -15.13 16 14 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 17 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 O -0.27 -2.73 9.14 -39.51 -0.36 -3.09 16 22 C 0.12 1.12 6.37 -39.23 -0.25 0.87 16 23 C -0.18 -1.46 8.70 -39.44 -0.34 -1.80 16 24 C -0.11 -0.87 10.02 -39.53 -0.40 -1.26 16 25 C 0.06 0.55 7.30 -39.42 -0.29 0.26 16 26 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 27 C -0.11 -0.87 10.02 -39.53 -0.40 -1.27 16 28 C -0.11 -0.95 9.99 -39.44 -0.39 -1.34 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 30 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.40 3.81 8.35 -40.82 -0.34 3.46 16 35 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 0.85 5.68 -52.49 -0.30 0.55 16 41 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -36.26 377.82 -6.74 -43.01 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.54 Total: -1.21 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.62 Total: -3.72 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.45 Total: -36.21 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.09 Total: -23.93 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.26 -6.74 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360406810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.329 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds