Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00276 * 2 1 4 4 N 1.46903 * 109.47117 * 124.36517 * 3 2 1 5 5 C 1.46899 * 110.99679 * 199.67970 * 4 3 2 6 6 C 1.50697 * 109.47409 * 66.04912 * 5 4 3 7 7 H 1.08000 * 119.99978 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99838 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00017 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99881 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47293 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47102 * 119.99743 * 10 8 6 13 13 H 1.48500 * 109.47006 * 240.00122 * 10 8 6 14 14 C 1.46892 * 110.99916 * 75.72085 * 4 3 2 15 15 C 1.53002 * 109.47188 * 200.10327 * 14 4 3 16 16 O 1.42901 * 109.46845 * 65.00291 * 15 14 4 17 17 C 1.35902 * 116.99970 * 179.38433 * 16 15 14 18 18 C 1.38732 * 120.05524 * 180.02562 * 17 16 15 19 19 C 1.38145 * 119.94566 * 180.02562 * 18 17 16 20 20 C 1.38271 * 120.05334 * 0.02562 * 19 18 17 21 21 S 1.76203 * 119.94296 * 179.97438 * 20 19 18 22 22 C 1.81401 * 104.44739 * 90.00081 * 21 20 19 23 23 O 1.42096 * 104.27237 * 333.92930 * 21 20 19 24 24 O 1.42095 * 104.27296 * 206.07197 * 21 20 19 25 25 C 1.38271 * 120.11107 * 0.25363 * 20 19 18 26 26 C 1.38141 * 120.05385 * 359.45093 * 25 20 19 27 27 H 1.08001 * 119.99429 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00234 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99840 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47084 * 4.36683 * 3 2 1 31 31 H 1.08999 * 109.47349 * 244.36287 * 3 2 1 32 32 H 1.09007 * 109.46564 * 186.04688 * 5 4 3 33 33 H 1.08992 * 109.47089 * 306.04045 * 5 4 3 34 34 H 0.96998 * 120.00004 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46937 * 80.10977 * 14 4 3 36 36 H 1.09002 * 109.47331 * 320.10631 * 14 4 3 37 37 H 1.08991 * 109.47424 * 305.00433 * 15 14 4 38 38 H 1.08998 * 109.47285 * 185.00102 * 15 14 4 39 39 H 1.08005 * 120.03034 * 359.97438 * 18 17 16 40 40 H 1.08001 * 119.97245 * 179.97438 * 19 18 17 41 41 H 1.08999 * 109.47148 * 59.99891 * 22 21 20 42 42 H 1.09008 * 109.46774 * 299.99766 * 22 21 20 43 43 H 1.08996 * 109.47280 * 180.02562 * 22 21 20 44 44 H 1.07990 * 119.97014 * 179.70674 * 25 20 19 45 45 H 1.07998 * 120.02944 * 180.25127 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9855 1.3382 1.1433 5 6 3.3841 2.7165 1.4583 6 6 2.1839 3.4882 1.9431 7 1 1.2212 3.0033 2.0101 8 6 2.3149 4.8133 2.3012 9 7 3.4873 5.4035 2.2201 10 14 0.8270 5.7700 2.9015 11 1 -0.3648 4.8841 2.9000 12 1 1.0776 6.2609 4.2804 13 1 0.5853 6.9256 2.0008 14 6 4.1615 0.4935 0.8958 15 6 4.8285 0.1449 2.2280 16 8 3.9422 -0.6601 3.0080 17 6 4.3899 -1.0699 4.2240 18 6 3.5817 -1.8546 5.0337 19 6 4.0388 -2.2695 6.2696 20 6 5.3006 -1.9028 6.6999 21 16 5.8806 -2.4330 8.2771 22 6 6.7006 -4.0173 7.9485 23 8 4.6964 -2.6324 9.0368 24 8 6.8328 -1.4464 8.6499 25 6 6.1059 -1.1159 5.8972 26 6 5.6557 -0.7036 4.6580 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3579 2.1321 0.0782 31 1 2.6304 1.3974 -0.9265 32 1 4.1473 2.7051 2.2365 33 1 3.7848 3.1924 0.5634 34 1 3.5795 6.3356 2.4723 35 1 4.8692 1.0317 0.2651 36 1 3.8515 -0.4230 0.3939 37 1 5.0584 1.0620 2.7702 38 1 5.7496 -0.4066 2.0398 39 1 2.5955 -2.1403 4.6985 40 1 3.4098 -2.8800 6.9004 41 1 7.5186 -3.8640 7.2447 42 1 5.9814 -4.7173 7.5230 43 1 7.0940 -4.4230 8.8806 44 1 7.0892 -0.8269 6.2376 45 1 6.2866 -0.0924 4.0297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428863810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = -75.324904 kcal Electronic energy + Delta-G solvation = -26802.986442 eV Core-core repulsion = 22913.270443 eV Total energy + Delta-G solvation = -3889.715999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20783 -39.14836 -38.09332 -38.06712 -36.89382 -34.99441 -34.19382 -32.27713 -31.68808 -30.53224 -30.07967 -28.88225 -26.22453 -24.95791 -23.92031 -23.36066 -21.80998 -20.46690 -19.95231 -19.42084 -18.61382 -18.31150 -17.41223 -17.17873 -17.05032 -16.75860 -16.37646 -16.18176 -15.71517 -15.56664 -15.44538 -14.71336 -14.68790 -14.46949 -14.14503 -14.03809 -13.94629 -13.86175 -13.67709 -13.56239 -13.29995 -13.07458 -12.99665 -12.91836 -12.74187 -12.59863 -12.43424 -12.12262 -12.06045 -11.93702 -11.82176 -11.60863 -11.48242 -11.23542 -10.64098 -10.22690 -10.13594 -9.53060 -8.98525 -8.24005 -6.32022 -0.76149 -0.06087 0.26157 1.35930 1.38035 1.48083 1.50695 1.99046 2.17789 2.37194 2.44853 3.09065 3.12919 3.25910 3.32065 3.69506 3.82299 3.97297 4.02187 4.17585 4.18395 4.21075 4.24299 4.31089 4.41975 4.44299 4.50595 4.56953 4.64712 4.78670 4.88107 4.91917 4.98095 5.02427 5.04134 5.08360 5.21454 5.22356 5.24753 5.62211 5.67150 5.77723 6.02189 6.03943 6.31266 6.35456 6.62380 6.83883 7.37228 8.86877 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011564 B = 0.002763 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.653341 B =10130.233390 C =11281.899762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C 0.085 3.915 4 N -0.537 5.537 5 C 0.208 3.792 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.051 3.949 15 C 0.068 3.932 16 O -0.303 6.303 17 C 0.170 3.830 18 C -0.188 4.188 19 C 0.010 3.990 20 C -0.709 4.709 21 S 2.515 3.485 22 C -0.621 4.621 23 O -0.979 6.979 24 O -0.982 6.982 25 C 0.009 3.991 26 C -0.244 4.244 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.008 0.992 33 H -0.034 1.034 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.983 -22.908 4.483 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.158 4.158 3 C -0.042 4.042 4 N -0.261 5.261 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.201 1.201 14 C -0.077 4.077 15 C -0.007 4.007 16 O -0.215 6.215 17 C 0.123 3.877 18 C -0.208 4.208 19 C -0.009 4.009 20 C -0.795 4.795 21 S 2.698 3.302 22 C -0.775 4.775 23 O -0.976 6.976 24 O -0.979 6.979 25 C -0.010 4.010 26 C -0.264 4.264 27 H 0.104 0.896 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.026 0.974 33 H -0.016 1.016 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.517 -22.475 5.559 24.052 hybrid contribution 0.042 1.503 -1.323 2.003 sum 6.560 -20.972 4.235 22.378 Atomic orbital electron populations 1.23895 0.95721 1.02128 1.01059 1.22861 0.96182 0.97459 0.99345 1.21133 0.95551 0.96539 0.91002 1.62020 1.14798 1.11303 1.37989 1.19417 0.95282 0.83838 0.93275 1.21450 0.95862 0.95362 1.43059 0.92487 1.25812 0.98847 0.98759 0.95943 1.70059 1.24820 1.12575 1.49741 0.85459 0.79576 0.78458 0.77932 1.19009 1.20669 1.20117 1.22230 0.92751 0.98345 0.94337 1.23024 0.92500 0.93556 0.91636 1.86198 1.44357 1.64675 1.26271 1.19741 0.92478 0.90378 0.85127 1.20795 1.01502 1.03135 0.95324 1.20986 0.92968 0.93617 0.93284 1.30548 1.05680 1.17951 1.25304 1.04595 0.74243 0.78229 0.73113 1.30014 1.15184 1.17975 1.14360 1.93524 1.47956 1.87553 1.68613 1.93525 1.63935 1.58873 1.81612 1.20953 0.99241 0.89850 0.90914 1.21607 0.96940 1.07614 1.00211 0.89638 0.86383 0.86428 0.91955 0.94555 0.97426 1.01602 0.92729 0.92463 0.88453 0.93561 0.88533 0.83748 0.81553 0.82924 0.82713 0.82859 0.82387 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.40 14.32 67.78 0.97 -4.43 16 2 C -0.14 -4.33 9.32 25.64 0.24 -4.10 16 3 C 0.09 3.23 5.24 85.56 0.45 3.68 16 4 N -0.54 -22.51 4.29 -905.37 -3.88 -26.39 16 5 C 0.21 10.83 4.55 85.56 0.39 11.22 16 6 C -0.52 -29.58 8.23 25.60 0.21 -29.37 16 7 H 0.06 3.27 7.31 -2.91 -0.02 3.25 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 10 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.05 1.67 5.19 86.31 0.45 2.11 16 15 C 0.07 2.08 4.93 71.98 0.36 2.43 16 16 O -0.30 -10.03 10.08 -92.44 -0.93 -10.96 16 17 C 0.17 5.06 6.69 22.51 0.15 5.21 16 18 C -0.19 -4.92 9.99 22.37 0.22 -4.70 16 19 C 0.01 0.22 9.46 22.26 0.21 0.43 16 20 C -0.71 -14.85 5.66 22.29 0.13 -14.72 16 21 S 2.51 41.54 5.80 -56.49 -0.33 41.22 16 22 C -0.62 -2.72 10.80 113.37 1.22 -1.50 16 23 O -0.98 -22.99 17.12 -127.65 -2.19 -25.18 16 24 O -0.98 -23.76 17.11 -127.65 -2.18 -25.94 16 25 C 0.01 0.21 9.46 22.25 0.21 0.42 16 26 C -0.24 -6.46 9.04 22.37 0.20 -6.26 16 27 H 0.09 2.59 7.84 -2.91 -0.02 2.56 16 28 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.12 3.18 7.29 -2.91 -0.02 3.15 16 30 H 0.06 2.71 6.23 -2.39 -0.01 2.70 16 31 H 0.04 1.29 8.00 -2.39 -0.02 1.27 16 32 H 0.01 0.43 6.59 -2.38 -0.02 0.42 16 33 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.06 1.79 7.99 -2.38 -0.02 1.77 16 36 H 0.10 2.66 6.81 -2.39 -0.02 2.64 16 37 H 0.05 1.67 6.24 -2.39 -0.01 1.65 16 38 H 0.10 2.18 7.63 -2.39 -0.02 2.16 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.17 2.74 7.57 -2.91 -0.02 2.72 16 41 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.16 2.91 7.56 -2.92 -0.02 2.88 16 45 H 0.14 3.44 6.30 -2.91 -0.02 3.43 16 Total: -1.00 -80.43 387.21 -0.35 -80.78 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.98 Total: 13.77 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 5.87 Total: -38.85 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -3.60 Total: -82.05 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -5.30 Total: -62.08 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 41.54 SS G_CDS: -0.33 Total: 41.22 kcal Total: -80.43 -0.35 -80.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428863810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.454 kcal (2) G-P(sol) polarization free energy of solvation -80.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds