Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00071 * 2 1 4 4 C 1.52998 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47090 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00179 * 90.00427 * 5 4 3 7 7 C 1.38233 * 120.00189 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99834 * 0.27623 * 7 6 5 9 9 S 1.76194 * 119.99826 * 179.72474 * 8 7 6 10 10 O 1.42101 * 106.40023 * 203.53743 * 9 8 7 11 11 O 1.42093 * 106.40547 * 336.46055 * 9 8 7 12 12 N 1.65597 * 107.21850 * 90.00275 * 9 8 7 13 13 C 1.46507 * 120.00287 * 64.99722 * 12 9 8 14 14 C 1.52999 * 109.47222 * 164.44861 * 13 12 9 15 15 C 1.50700 * 115.54860 * 65.11426 * 14 13 12 16 16 H 1.08002 * 120.00507 * 264.73105 * 15 14 13 17 17 C 1.37878 * 120.00132 * 84.73184 * 15 14 13 18 18 N 1.31520 * 119.99730 * 352.53548 * 17 15 14 19 19 Si 1.86796 * 120.00493 * 172.53137 * 17 15 14 20 20 H 1.48501 * 109.46999 * 89.99842 * 19 17 15 21 21 H 1.48495 * 109.47742 * 210.00505 * 19 17 15 22 22 H 1.48505 * 109.47082 * 330.00750 * 19 17 15 23 23 C 1.53001 * 117.49940 * 279.44756 * 14 13 12 24 24 C 1.52993 * 117.49782 * 210.78409 * 14 13 12 25 25 C 1.38240 * 119.99853 * 359.53105 * 8 7 6 26 26 C 1.38233 * 120.00030 * 0.40214 * 25 8 7 27 27 H 1.09004 * 109.46412 * 300.00082 * 1 2 3 28 28 H 1.09000 * 109.46964 * 59.99315 * 1 2 3 29 29 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46932 * 60.00310 * 3 2 1 31 31 H 1.08997 * 109.47690 * 300.00232 * 3 2 1 32 32 H 1.09005 * 109.47197 * 60.00337 * 4 3 2 33 33 H 1.09001 * 109.47641 * 300.00040 * 4 3 2 34 34 H 1.08003 * 119.99773 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.00261 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00220 * 244.99999 * 12 9 8 37 37 H 1.09001 * 109.46705 * 284.45064 * 13 12 9 38 38 H 1.09000 * 109.47049 * 44.44913 * 13 12 9 39 39 H 0.97000 * 119.99946 * 185.02552 * 18 17 15 40 40 H 1.08995 * 117.49926 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.49790 * 145.02331 * 23 14 13 42 42 H 1.09004 * 117.49936 * 214.98039 * 24 14 13 43 43 H 1.08996 * 117.50073 * 359.97438 * 24 14 13 44 44 H 1.07995 * 119.99873 * 180.22981 * 25 8 7 45 45 H 1.08000 * 119.99722 * 179.83059 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 6 4.4292 3.1924 1.1987 7 6 4.9920 4.4550 1.1993 8 6 5.2688 5.0888 0.0024 9 16 5.9794 6.7011 0.0032 10 8 5.6410 7.2893 -1.2454 11 8 5.6451 7.2864 1.2541 12 7 7.6245 6.5117 0.0002 13 6 8.2890 5.8966 -1.1515 14 6 9.7904 6.1842 -1.0877 15 6 10.5218 5.5653 0.0755 16 1 10.6899 6.1392 0.9749 17 6 10.9764 4.2664 -0.0083 18 7 10.6468 3.5196 -1.0396 19 14 12.0606 3.5671 1.3425 20 1 11.2095 2.9392 2.3850 21 1 12.9725 2.5462 0.7669 22 1 12.8617 4.6601 1.9499 23 6 10.2688 7.5533 -1.5752 24 6 10.5440 6.3026 -2.4138 25 6 4.9917 4.4561 -1.1951 26 6 4.4302 3.1929 -1.1956 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8892 33 1 3.8568 0.6438 0.8908 34 1 4.2088 2.6989 2.1338 35 1 5.2117 4.9479 2.1348 36 1 8.1482 6.8080 0.7610 37 1 8.1243 4.8193 -1.1333 38 1 7.8785 6.3114 -2.0721 39 1 10.9051 2.5849 -1.0639 40 1 9.5140 8.2489 -1.9419 41 1 11.1128 8.0061 -1.0550 42 1 11.5690 5.9331 -2.4450 43 1 9.9704 6.1751 -3.3318 44 1 5.2114 4.9498 -2.1301 45 1 4.2113 2.6998 -2.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429981067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -79.340252 kcal Electronic energy + Delta-G solvation = -27171.169881 eV Core-core repulsion = 23281.279764 eV Total energy + Delta-G solvation = -3889.890117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.54363 -38.08550 -37.13248 -36.76848 -35.50510 -33.78969 -33.26135 -31.98735 -31.05572 -29.38855 -26.65900 -25.97163 -24.91210 -23.92825 -22.89058 -21.41087 -21.13640 -19.49418 -19.03063 -17.74203 -16.98043 -16.84150 -16.49759 -16.22608 -15.64470 -15.50015 -15.09246 -14.96037 -14.72089 -14.39018 -14.09480 -13.65705 -13.63819 -13.31354 -13.16550 -12.84898 -12.45552 -12.21030 -12.08187 -11.99947 -11.78464 -11.76106 -11.66609 -11.50014 -11.34548 -11.12737 -11.02784 -11.00729 -10.62261 -10.49865 -10.24411 -10.01802 -9.60878 -9.20547 -9.04988 -9.01085 -8.65246 -8.47467 -8.18868 -6.11688 -4.18524 0.67227 0.94249 1.32595 3.20628 3.23319 3.31634 3.34754 3.47901 3.64485 4.13026 4.33213 4.51629 4.66944 4.68966 4.78909 4.91371 4.92957 5.02005 5.06913 5.13299 5.16869 5.28322 5.29786 5.31400 5.39615 5.61275 5.64498 5.79036 5.86367 5.94771 6.13090 6.13859 6.24784 6.35770 6.39029 6.40275 6.55018 6.74195 6.78427 6.83737 7.01794 7.06413 7.37961 7.50342 7.73636 7.80003 8.33712 8.82670 9.48024 10.96216 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.003338 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.542934 B = 8386.109697 C = 9768.153889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.067 3.933 4 C -0.085 4.085 5 C -0.035 4.035 6 C -0.138 4.138 7 C -0.014 4.014 8 C -0.670 4.670 9 S 2.692 3.308 10 O -0.966 6.966 11 O -0.973 6.973 12 N -1.094 6.094 13 C 0.159 3.841 14 C 0.037 3.963 15 C -0.497 4.497 16 H 0.061 0.939 17 C 0.074 3.926 18 N -0.876 5.876 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.209 4.209 24 C -0.152 4.152 25 C -0.014 4.014 26 C -0.136 4.136 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.421 0.579 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 -4.085 1.058 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.122 4.122 5 C -0.035 4.035 6 C -0.157 4.157 7 C -0.033 4.033 8 C -0.756 4.756 9 S 2.781 3.219 10 O -0.956 6.956 11 O -0.963 6.963 12 N -0.856 5.856 13 C 0.034 3.966 14 C 0.035 3.965 15 C -0.535 4.535 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.512 5.512 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.246 4.246 24 C -0.191 4.191 25 C -0.033 4.033 26 C -0.154 4.154 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.159 0.841 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.576 -3.720 0.780 17.006 hybrid contribution 0.683 -1.074 0.981 1.607 sum -15.893 -4.794 1.761 16.693 Atomic orbital electron populations 1.22746 0.80838 1.02789 1.00087 1.87860 1.19852 1.27997 1.95477 1.22494 0.93105 0.84606 1.00774 1.20564 0.93145 0.93601 1.04913 1.19936 0.95200 0.94777 0.93623 1.21136 1.01256 0.95518 0.97768 1.20897 0.91836 0.93820 0.96757 1.31134 1.18279 1.26806 0.99349 1.01795 0.72956 0.73794 0.73362 1.93554 1.83399 1.74253 1.44429 1.93544 1.83382 1.75617 1.43788 1.55146 1.23606 1.77336 1.29509 1.20941 0.94544 0.96981 0.84175 1.18895 0.89430 0.93434 0.94780 1.20366 1.35727 0.97900 0.99523 0.92082 1.24969 0.95561 0.97095 0.95342 1.69964 1.45481 1.06598 1.29153 0.86660 0.80878 0.78920 0.81976 1.20669 1.21201 1.19793 1.23028 1.02982 0.91847 1.06771 1.22546 1.01447 1.00517 0.94557 1.20943 0.91652 0.93876 0.96798 1.21150 1.01020 0.95462 0.97806 0.94026 0.93992 0.89552 0.92941 0.92886 0.89518 0.89604 0.85229 0.84218 0.74253 0.91198 0.93343 0.92921 0.91330 0.90342 0.89900 0.91623 0.84149 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.95 10.70 -35.23 -0.38 -4.33 16 3 C 0.07 0.61 5.92 37.16 0.22 0.83 16 4 C -0.08 -0.84 5.71 -27.88 -0.16 -0.99 16 5 C -0.03 -0.42 5.13 -104.62 -0.54 -0.95 16 6 C -0.14 -1.71 9.70 -39.58 -0.38 -2.09 16 7 C -0.01 -0.20 9.52 -39.58 -0.38 -0.57 16 8 C -0.67 -10.37 5.95 -39.58 -0.24 -10.60 16 9 S 2.69 45.73 5.74 -107.50 -0.62 45.11 16 10 O -0.97 -18.24 16.75 -57.17 -0.96 -19.20 16 11 O -0.97 -17.87 17.28 -57.17 -0.99 -18.85 16 12 N -1.09 -19.99 5.95 -10.61 -0.06 -20.05 16 13 C 0.16 3.28 6.05 -4.04 -0.02 3.25 16 14 C 0.04 0.84 1.43 -155.66 -0.22 0.61 16 15 C -0.50 -12.48 8.47 -34.44 -0.29 -12.77 16 16 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 17 C 0.07 1.91 5.38 -17.82 -0.10 1.81 16 18 N -0.88 -23.21 12.98 55.43 0.72 -22.49 16 19 Si 0.89 20.14 29.55 -169.99 -5.02 15.11 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 24 C -0.15 -3.37 9.49 -26.69 -0.25 -3.62 16 25 C -0.01 -0.20 9.52 -39.58 -0.38 -0.57 16 26 C -0.14 -1.70 9.70 -39.58 -0.38 -2.09 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.14 1.81 7.62 -52.49 -0.40 1.41 16 36 H 0.42 7.54 8.38 -34.47 -0.29 7.25 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.05 0.94 7.69 -51.93 -0.40 0.55 16 39 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -30.90 394.37 -10.58 -41.49 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.95 Total: 8.30 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -2.27 Total: -31.03 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.66 Total: -42.55 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.32 Total: -42.38 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.62 Total: 45.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.90 -10.58 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429981067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.851 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds